AT5G16570

glutamine synthetase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
5421589 .. 5424749
3161 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G16570.1

Sequence Viewer

Length: 1071 bp
ATGTCTTCACTTGCAGATTTAATCAATCTCGATCTCTCCGATTCCACTGACCAGATCATCGCCGAGTACATATGGATTGGTGGATCGGGCTTGGATATGAGAAGCAAAGCAAGGACTTTGCCTGGACCAGTGACGGATCCATCGCAGTTACCGAAATGGAACTACGACGGTTCAAGCACCGGCCAAGCTCCGGGCGATGACAGTGAAGTCATCATCTACCCTCAAGCTATCTTCAAAGACCCCTTCAGAAGAGGCAACAACATCCTTGTGATGTGTGACGCATATACACCGGCAGGAGAGCCGATTCCGACGAACAAAAGGCATGCGGCGGCTAAGATCTTTGAAGACCCTAGTGTTGTCGCCGAAGAAACATGGTACGGAATTGAACAAGAGTATACCTTGTTGCAAAAGGATATTAAGTGGCCGGTAGGTTGGCCGGTCGGCGGTTTCCCAGGTCCTCAGGGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTTGGAAGAGACATCGTTGATTCTCATTACAAAGCTTGTCTTTACGCCGGAATCAATGTCAGTGGGACTAACGGCGAAGTTATGCCTGGCCAGTGGGAGTTCCAAGTCGGTCCCACCGTTGGAATCGCTGCCGCCGATCAGGTCTGGGTTGCTCGTTACATTCTTGAGAGGATCACAGAATTGGCTGGAGTTGTTCTGTCTCTAGACCCTAAACCAATTCCGGGAGATTGGAATGGTGCAGGGGCACACACAAATTACAGTACGAAGTCGATGAGAGAAGATGGAGGGTACGAGGTGATAAAGAAAGCAATAGAGAAGCTTGGATTGCGTCACAAGGAACACATTGCTGCTTATGGTGAAGGCAACGAGCGTCGTCTCACCGGAAAACATGAAACCGCCGATATCAACACTTTCTTATGGGGTGTGGCAAACCGTGGGGCATCGATTAGGGTTGGGCGTGACACTGAGCAGGCTGGAAAAGGATACTTTGAAGATCGTAGGCCAGCTTCGAACATGGATCCTTACACTGTGACCTCCATGATTGCTGAATCCACAATCCTTTGGAAACCATGA

Protein Analysis

356

Amino Acids

38.99

Weight (kDa)

5.12

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gln-synt_N PF03951 52 - 97 9.8e-08 Glutamine synthetase, beta-Grasp domain
Gln-synt_C PF00120 168 - 347 2.9e-12 Glutamine synthetase, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 206
AccI GTMKAC 1 cut(s) 395
AciI CCGC 5 cut(s) 326, 329, 444, 630, 894
AclWI GGATC 6 cut(s) 91, 131, 144, 677, 1010, 1023
AcoI YGGCCR 4 cut(s) 181, 422, 434, 586
AcuI CTGAAG 1 cut(s) 229
AfaI GTAC 5 cut(s) 68, 377, 470, 760, 788
AfiI CCNNNNNNNGG 4 cut(s) 190, 443, 617, 719
AgsI TTSAA 5 cut(s) 174, 235, 344, 386, 989
AjnI CCWGG 3 cut(s) 121, 451, 583
AluBI AGCT 5 cut(s) 188, 227, 533, 817, 1004
AluI AGCT 5 cut(s) 188, 227, 533, 817, 1004
Alw26I GTCTC 3 cut(s) 501, 702, 878
AlwI GGATC 6 cut(s) 91, 131, 144, 677, 1010, 1023
AoxI GGCC 5 cut(s) 181, 422, 434, 586, 998
ApeKI GCWGC 2 cut(s) 626, 845
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
AspS9I GGNCC 4 cut(s) 125, 455, 464, 608
AsuC2I CCSGG 2 cut(s) 192, 720
AsuHPI GGTGA 3 cut(s) 805, 866, 868
AsuII TTCGAA 1 cut(s) 1007
AvaII GGWCC 4 cut(s) 125, 455, 464, 608
AxyI CCTNAGG 1 cut(s) 459
BaeGI GKGCMC 1 cut(s) 745
BalI TGGCCA 1 cut(s) 588
BamHI GGATCC 2 cut(s) 136, 1015
BarI GAAGNNNNNNTAC 2 cut(s) 988, 1020
BbsI GAAGAC 1 cut(s) 351
BbvI GCAGC 2 cut(s) 613, 832
BccI CCATC 2 cut(s) 148, 773
BceAI ACGGC 1 cut(s) 586
BciT130I CCWGG 3 cut(s) 123, 453, 585
BciVI GTATCC 1 cut(s) 974
BcnI CCSGG 2 cut(s) 192, 720
BcoDI GTCTC 3 cut(s) 501, 702, 878
BfaI CTAG 2 cut(s) 351, 701
BfuI GTATCC 1 cut(s) 974
BglII AGATCT 1 cut(s) 336
BisI GCNGC 5 cut(s) 327, 330, 627, 630, 846
BlsI GCNGC 5 cut(s) 328, 331, 628, 631, 847
Bme1390I CCNGG 5 cut(s) 123, 192, 453, 585, 720
Bme18I GGWCC 4 cut(s) 125, 455, 464, 608
BmgT120I GGNCC 4 cut(s) 125, 455, 464, 608
BmiI GGNNCC 4 cut(s) 138, 465, 610, 1017
BmrFI CCNGG 5 cut(s) 123, 192, 453, 585, 720
BmsI GCATC 1 cut(s) 947
BpiI GAAGAC 1 cut(s) 351
BpmI CTGGAG 1 cut(s) 705
Bpu14I TTCGAA 1 cut(s) 1007
BpuEI CTTGAG 2 cut(s) 207, 683
BpuMI CCSGG 2 cut(s) 192, 720
Bsa29I ATCGAT 1 cut(s) 941
BsaJI CCNNGG 2 cut(s) 451, 931
BsaWI WCCGGW 1 cut(s) 878
Bsc4I CCNNNNNNNGG 4 cut(s) 190, 443, 617, 719
Bse118I RCCGGY 4 cut(s) 179, 289, 424, 436
Bse1I ACTGG 2 cut(s) 128, 589
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 1 cut(s) 840
BseBI CCWGG 3 cut(s) 123, 453, 585
BseCI ATCGAT 1 cut(s) 941
BseDI CCNNGG 2 cut(s) 451, 931
BseGI GGATG 1 cut(s) 261
BseLI CCNNNNNNNGG 4 cut(s) 190, 443, 617, 719
BseMI GCAATG 1 cut(s) 840
BseMII CTCAG 2 cut(s) 473, 954
BseNI ACTGG 2 cut(s) 128, 589
BseSI GKGCMC 1 cut(s) 745
BseXI GCAGC 2 cut(s) 613, 832
BsgI GTGCAG 1 cut(s) 756
Bsh1285I CGRYCG 1 cut(s) 441
BshFI GGCC 5 cut(s) 183, 424, 436, 588, 1000
BshVI ATCGAT 1 cut(s) 941
BsiEI CGRYCG 1 cut(s) 441
BsiSI CCGG 8 cut(s) 180, 191, 290, 425, 437, 546, 719, 879
BslFI GGGAC 3 cut(s) 477, 577, 594
BslI CCNNNNNNNGG 4 cut(s) 190, 443, 617, 719
BsmAI GTCTC 3 cut(s) 501, 702, 878
BsmBI CGTCTC 1 cut(s) 878
BsmFI GGGAC 3 cut(s) 477, 577, 594
BsnI GGCC 5 cut(s) 183, 424, 436, 588, 1000
Bsp119I TTCGAA 1 cut(s) 1007
Bsp1286I GDGCHC 1 cut(s) 745
Bsp143I GATC 9 cut(s) 31, 54, 83, 136, 336, 634, 669, 991, 1015
BspACI CCGC 5 cut(s) 326, 329, 444, 630, 894
BspANI GGCC 5 cut(s) 183, 424, 436, 588, 1000
BspCNI CTCAG 2 cut(s) 472, 955
BspDI ATCGAT 1 cut(s) 941
BspLI GGNNCC 4 cut(s) 138, 465, 610, 1017
BspPI GGATC 6 cut(s) 91, 131, 144, 677, 1010, 1023
BspT104I TTCGAA 1 cut(s) 1007
BsrDI GCAATG 1 cut(s) 840
BsrFI RCCGGY 4 cut(s) 179, 289, 424, 436
BsrI ACTGG 2 cut(s) 128, 589
BssAI RCCGGY 4 cut(s) 179, 289, 424, 436
BssECI CCNNGG 2 cut(s) 451, 931
BssMI GATC 9 cut(s) 31, 54, 83, 136, 336, 634, 669, 991, 1015
BssNAI GTATAC 1 cut(s) 396
Bst1107I GTATAC 1 cut(s) 396
Bst2UI CCWGG 3 cut(s) 123, 453, 585
Bst4CI ACNGT 8 cut(s) 170, 203, 468, 476, 616, 758, 932, 1027
Bst6I CTCTTC 2 cut(s) 244, 499
BstBI TTCGAA 1 cut(s) 1007
BstC8I GCNNGC 3 cut(s) 324, 969, 1002
BstDEI CTNAG 3 cut(s) 333, 459, 963
BstDSI CCRYGG 1 cut(s) 931
BstF5I GGATG 1 cut(s) 261
BstKTI GATC 9 cut(s) 34, 57, 86, 139, 339, 637, 672, 994, 1018
BstMAI GTCTC 3 cut(s) 501, 702, 878
BstMBI GATC 9 cut(s) 31, 54, 83, 136, 336, 634, 669, 991, 1015
BstMCI CGRYCG 1 cut(s) 441
BstMWI GCNNNNNNNGC 2 cut(s) 494, 823
BstNI CCWGG 3 cut(s) 123, 453, 585
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 5 cut(s) 121, 190, 451, 583, 718
BstSLI GKGCMC 1 cut(s) 745
BstV1I GCAGC 2 cut(s) 613, 832
BstV2I GAAGAC 1 cut(s) 351
BstX2I RGATCY 3 cut(s) 136, 336, 1015
BstYI RGATCY 3 cut(s) 136, 336, 1015
BstZ17I GTATAC 1 cut(s) 396
Bsu15I ATCGAT 1 cut(s) 941
Bsu36I CCTNAGG 1 cut(s) 459
BsuI GTATCC 1 cut(s) 974
BsuRI GGCC 5 cut(s) 183, 424, 436, 588, 1000
BsuTUI ATCGAT 1 cut(s) 941
BtgI CCRYGG 1 cut(s) 931
BtgZI GCGATG 3 cut(s) 43, 126, 210
BtsCI GGATG 1 cut(s) 261
BtsIMutI CAGTG 7 cut(s) 45, 135, 208, 565, 596, 960, 1023
Cac8I GCNNGC 3 cut(s) 324, 969, 1002
Cfr10I RCCGGY 4 cut(s) 179, 289, 424, 436
Cfr13I GGNCC 4 cut(s) 125, 455, 464, 608
ClaI ATCGAT 1 cut(s) 941
CseI GACGC 3 cut(s) 287, 815, 857
Csp6I GTAC 5 cut(s) 67, 376, 469, 759, 787
CspCI CAANNNNNGTGG 2 cut(s) 541, 576
CviAII CATG 6 cut(s) 323, 372, 887, 1012, 1036, 1068
CviQI GTAC 5 cut(s) 67, 376, 469, 759, 787
DdeI CTNAG 3 cut(s) 333, 459, 963
DpnI GATC 9 cut(s) 33, 56, 85, 138, 338, 636, 671, 993, 1017
DpnII GATC 9 cut(s) 31, 54, 83, 136, 336, 634, 669, 991, 1015
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
EaeI YGGCCR 4 cut(s) 181, 422, 434, 586
Eam1104I CTCTTC 2 cut(s) 244, 499
EarI CTCTTC 2 cut(s) 244, 499
Eco32I GATATC 1 cut(s) 901
Eco47I GGWCC 4 cut(s) 125, 455, 464, 608
Eco57I CTGAAG 1 cut(s) 229
Eco81I CCTNAGG 1 cut(s) 459
EcoO109I RGGNCCY 1 cut(s) 455
EcoRII CCWGG 3 cut(s) 121, 451, 583
EcoRV GATATC 1 cut(s) 901
Esp3I CGTCTC 1 cut(s) 878
FaeI CATG 6 cut(s) 326, 375, 890, 1015, 1039, 1071
FalI AAGNNNNNCTT 2 cut(s) 522, 554
FaqI GGGAC 3 cut(s) 477, 577, 594
FatI CATG 6 cut(s) 322, 371, 886, 1011, 1035, 1067
FauNDI CATATG 1 cut(s) 71
FblI GTMKAC 1 cut(s) 395
Fnu4HI GCNGC 5 cut(s) 327, 330, 627, 630, 846
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 5 cut(s) 327, 330, 627, 630, 846
FspBI CTAG 2 cut(s) 351, 701
GluI GCNGC 5 cut(s) 327, 330, 627, 630, 846
GsuI CTGGAG 1 cut(s) 705
HaeIII GGCC 5 cut(s) 183, 424, 436, 588, 1000
HapII CCGG 8 cut(s) 180, 191, 290, 425, 437, 546, 719, 879
HgaI GACGC 3 cut(s) 287, 815, 857
Hin1II CATG 6 cut(s) 326, 375, 890, 1015, 1039, 1071
HindIII AAGCTT 2 cut(s) 531, 815
HinfI GANTC 6 cut(s) 41, 304, 518, 549, 621, 1046
HpaII CCGG 8 cut(s) 180, 191, 290, 425, 437, 546, 719, 879
HphI GGTGA 3 cut(s) 805, 866, 868
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 3 cut(s) 40, 248, 309
Hpy188III TCNNGA 3 cut(s) 29, 662, 701
Hpy8I GTNNAC 1 cut(s) 396
Hpy99I CGWCG 3 cut(s) 170, 313, 873
HpyAV CCTTC 2 cut(s) 253, 851
HpyCH4III ACNGT 8 cut(s) 170, 203, 468, 476, 616, 758, 932, 1027
HpyCH4V TGCA 3 cut(s) 14, 406, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 494, 823
HpyF3I CTNAG 3 cut(s) 333, 459, 963
Hsp92II CATG 6 cut(s) 326, 375, 890, 1015, 1039, 1071
Kzo9I GATC 9 cut(s) 31, 54, 83, 136, 336, 634, 669, 991, 1015
LmnI GCTCC 2 cut(s) 193, 485
Lsp1109I GCAGC 2 cut(s) 613, 832
LweI GCATC 1 cut(s) 947
MaeI CTAG 2 cut(s) 351, 701
MaeIII GTNAC 7 cut(s) 130, 147, 275, 653, 827, 956, 1027
MalI GATC 9 cut(s) 33, 56, 85, 138, 338, 636, 671, 993, 1017
MboI GATC 9 cut(s) 31, 54, 83, 136, 336, 634, 669, 991, 1015
MboII GAAGA 7 cut(s) 223, 261, 356, 377, 516, 788, 1001
MflI RGATCY 3 cut(s) 136, 336, 1015
MhlI GDGCHC 1 cut(s) 745
MlsI TGGCCA 1 cut(s) 588
MluCI AATT 4 cut(s) 381, 677, 714, 751
MluNI TGGCCA 1 cut(s) 588
MmeI TCCRAC 3 cut(s) 332, 463, 598
MnlI CCTC 7 cut(s) 231, 245, 468, 660, 776, 784, 1042
Mox20I TGGCCA 1 cut(s) 588
MscI TGGCCA 1 cut(s) 588
MseI TTAA 2 cut(s) 20, 417
MslI CAYNNNNRTG 1 cut(s) 266
Msp20I TGGCCA 1 cut(s) 588
MspI CCGG 8 cut(s) 180, 191, 290, 425, 437, 546, 719, 879
MspR9I CCNGG 5 cut(s) 123, 192, 453, 585, 720
MvaI CCWGG 3 cut(s) 123, 453, 585
MwoI GCNNNNNNNGC 2 cut(s) 494, 823
NciI CCSGG 2 cut(s) 192, 720
NdeI CATATG 1 cut(s) 71
NdeII GATC 9 cut(s) 31, 54, 83, 136, 336, 634, 669, 991, 1015
NlaIII CATG 6 cut(s) 326, 375, 890, 1015, 1039, 1071
NlaIV GGNNCC 4 cut(s) 138, 465, 610, 1017
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 5 cut(s) 130, 275, 827, 956, 1027
NspI RCATGY 1 cut(s) 326
NspV TTCGAA 1 cut(s) 1007
PaeI GCATGC 1 cut(s) 326
PcsI WCGNNNNNNNCGW 4 cut(s) 36, 149, 612, 630
PfeI GAWTC 6 cut(s) 41, 304, 518, 549, 621, 1046
PfoI TCCNGGA 1 cut(s) 718
PkrI GCNGC 5 cut(s) 328, 331, 628, 631, 847
PpuMI RGGWCCY 1 cut(s) 455
Psp5II RGGWCCY 1 cut(s) 455
Psp6I CCWGG 3 cut(s) 121, 451, 583
PspGI CCWGG 3 cut(s) 121, 451, 583
PspN4I GGNNCC 4 cut(s) 138, 465, 610, 1017
PspPI GGNCC 4 cut(s) 125, 455, 464, 608
PspPPI RGGWCCY 1 cut(s) 455
PsuI RGATCY 3 cut(s) 136, 336, 1015
RsaI GTAC 5 cut(s) 68, 377, 470, 760, 788
RsaNI GTAC 5 cut(s) 67, 376, 469, 759, 787
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 2 cut(s) 20, 417
SatI GCNGC 5 cut(s) 327, 330, 627, 630, 846
Sau3AI GATC 9 cut(s) 31, 54, 83, 136, 336, 634, 669, 991, 1015
Sau96I GGNCC 4 cut(s) 125, 455, 464, 608
ScrFI CCNGG 5 cut(s) 123, 192, 453, 585, 720
SduI GDGCHC 1 cut(s) 745
SfaNI GCATC 1 cut(s) 947
SfuI TTCGAA 1 cut(s) 1007
SinI GGWCC 4 cut(s) 125, 455, 464, 608
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 2 cut(s) 222, 662
SmoI CTYRAG 2 cut(s) 222, 662
SphI GCATGC 1 cut(s) 326
Sse9I AATT 4 cut(s) 381, 677, 714, 751
SsiI CCGC 5 cut(s) 326, 329, 444, 630, 894
SspMI CTAG 2 cut(s) 351, 701
StyD4I CCNGG 5 cut(s) 121, 190, 451, 583, 718
TaaI ACNGT 8 cut(s) 170, 203, 468, 476, 616, 758, 932, 1027
TaqI TCGA 4 cut(s) 30, 767, 941, 1007
TaqII GACCGA 1 cut(s) 596
TasI AATT 4 cut(s) 381, 677, 714, 751
TatI WGTACW 1 cut(s) 66
TauI GCSGC 3 cut(s) 329, 332, 632
TfiI GAWTC 6 cut(s) 41, 304, 518, 549, 621, 1046
Tru1I TTAA 2 cut(s) 20, 417
Tru9I TTAA 2 cut(s) 20, 417
TscAI CASTG 7 cut(s) 52, 135, 208, 565, 596, 967, 1030
TseFI GTSAC 5 cut(s) 130, 275, 827, 956, 1027
TseI GCWGC 2 cut(s) 626, 845
Tsp45I GTSAC 5 cut(s) 130, 275, 827, 956, 1027
TspDTI ATGAA 1 cut(s) 903
TspGWI ACGGA 2 cut(s) 149, 393
TspRI CASTG 7 cut(s) 52, 135, 208, 565, 596, 967, 1030
VpaK11BI GGWCC 4 cut(s) 125, 455, 464, 608
XbaI TCTAGA 1 cut(s) 700
XceI RCATGY 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 395
XspI CTAG 2 cut(s) 351, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.