Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001207

Physical Location & Seq

Genomic Coordinates Reverse (-)

21142311 .. 21144741

Gene Structure 2431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g19980.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTCTCTTCTCACTGATCTTATCAACCTCAACCTTTCTGATTCCACCGAGAAGATTATTGCAGAGTACATATGGATTGGTGGGTCTGGTATCGACATCAGAAGCAAAGCCAGGACTCTTCCTGGACCAGTGAGTGATCCCTCAAAACTTCCCAAGTGGAACTACGATGGTTCCAGCACTGGCCAAGCTCCTGGCAAAGACAGTGAAGTCATCCTTTATCCACAAGCAATTTTCAGGGACCCGTTCAGGAGAGGCAACAATATTCTTGTCATATGTGATACTTACACCCCGAGTGGAGAACCAATTCCGACCAATAAGCGGGCTAACGCGGCTAAAATTTTCAGCCATCCTGATGTCGTAGCCGAAGAACCCTGGTTTGGTTTAGAGCAAGAGTATACTTTGTTGCAGAAAGATCTGAAATGGCCAATTGGGTGGCCTCTCGGTGGATTTCCTGGACCACAGGGACCATACTACTGTGGTGTTGGAGCTGAGAAGTCCTTTGGGCGTGACATTGTAGATTCTCACTACAAAGCATGTCTATATGCTGGCATCGACATTAGTGGCATCAATGCTGAAGTTATGCCTGGCCAGTGGGAATTCCAAATCGGACCAACCGTTGGCATTGCTGCTGGAGATCAGTTATGGGCTGCTCGTCACATTTTGGAGAGGATTACAGAGATAGCTGGAGTGGTGCTTTCGTTTGATCCCAAACCTATTGAGGGCGATTGGAATGGGGCTGGTGCTCACACAAACTACAGCACCAAGTCGATGAGAAGCGATGGTGGTTATGAAGTGATAAAAAAGGCGATTGAAAAGCTTGGCTTGAGGCACAAGGAACACATTGCTGCTTATGGCGATGGCAATGAACGCCGCCTCACTGGGCGGCACGAAACAGCTGACATCAATAGGTTCTTATGGGGAGTGGCAAACCGAGGAGCGTCAGTGAGAGTCGGGAGGGACACAGAAAAAGACGGGAAAGGTTACTTTGAGGATAGGAGGCCGGCTTCTAACATGGATCCTTATGTTGTCACCTCCATGATCGCTGAAACTACTATTCTCTGGAAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Gln-synt_C Gln-synt_N

Protein Analysis

357

Amino Acids

39.25

Weight (kDa)

5.87

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48470 AT1G66200 AT1G66200 AT1G66200 AT3G17820 AT5G16570 AT5G16570 AT5G37600
fragaria_vesca	FvH4_1g30220 FvH4_3g32400 FvH4_4g36850 FvH4_5g17650
malus_domestica	MD09G1270600.v1.1 MD13G1006600.v1.1 MD14G1238700.v1.1 MD16G1001400.v1.1 MD17G1268700.v1.1
prunus_persica	Prupe.1G346600_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.5G236300_v2.0.a1
pyrus_communis	pycom09g18170 pycom14g19980 pycom17g26730
rosa_chinensis	RchiOBHm_Chr3g0491191 RchiOBHm_Chr4g0446601 RchiOBHm_Chr7g0178021
rosa_laevigata	RLG00000005481 RLG00000005647 RLG00000022854
rosa_multiflora	Rmu_sc0014162.1_g000003 Rmu_sc0015729.1_g000003 Rmu_sc0019011.1_g000005 Rmu_ssc0000144.1_g000004
rosa_roxburghii	Rroxscaffold_3G00275280 Rroxscaffold_5G00386990 Rroxscaffold_6G00393090
rosa_rugosa	Rorug03G0247600 Rorug04G0372700 Rorug06G0412400 Rorug06G0412400
rosa_samantha	Rh3BG333800 Rh3DG331200 Rh4AG434300 Rh4BG443500 Rh4CG460800 Rh4DG442300 Rh7AG011900 Rh7BG011300 Rh7CG011900 Rh7DG011900
rosa_wichuraiana	Rw3G026210 Rw3G026250 Rw4G037130 Rw7G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccB7I	CCANNNNNTGG	1 cut(s)	617
AccI	GTMKAC	1 cut(s)	395
AccII	CGCG	1 cut(s)	329
AciI	CCGC	4 cut(s)	319, 329, 871, 883
AclWI	GGATC	4 cut(s)	131, 698, 1010, 1023
AcoI	YGGCCR	3 cut(s)	181, 422, 586
AcsI	RAATTY	2 cut(s)	336, 596
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	5 cut(s)	318, 377, 443, 617, 719
AgsI	TTSAA	1 cut(s)	812
AjnI	CCWGG	6 cut(s)	110, 121, 190, 371, 451, 583
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AluBI	AGCT	5 cut(s)	188, 488, 683, 817, 896
AluI	AGCT	5 cut(s)	188, 488, 683, 817, 896
Alw21I	GWGCWC	1 cut(s)	745
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	4 cut(s)	131, 698, 1010, 1023
Ama87I	CYCGRG	1 cut(s)	289
AoxI	GGCC	5 cut(s)	181, 422, 434, 586, 998
ApeKI	GCWGC	3 cut(s)	626, 647, 845
ApoI	RAATTY	2 cut(s)	336, 596
Asp700I	GAANNNNTTC	1 cut(s)	303
AspS9I	GGNCC	5 cut(s)	125, 238, 455, 464, 608
AsuHPI	GGTGA	1 cut(s)	1021
AvaI	CYCGRG	1 cut(s)	289
AvaII	GGWCC	5 cut(s)	125, 238, 455, 464, 608
BalI	TGGCCA	3 cut(s)	183, 424, 588
BamHI	GGATCC	1 cut(s)	1015
Bbv12I	GWGCWC	1 cut(s)	745
BbvI	GCAGC	3 cut(s)	613, 634, 832
BccI	CCATC	4 cut(s)	161, 354, 773, 851
BciT130I	CCWGG	6 cut(s)	112, 123, 192, 373, 453, 585
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	754
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	6 cut(s)	330, 627, 648, 846, 871, 884
BlsI	GCNGC	6 cut(s)	331, 628, 649, 847, 872, 885
Bme1390I	CCNGG	6 cut(s)	112, 123, 192, 373, 453, 585
Bme18I	GGWCC	5 cut(s)	125, 238, 455, 464, 608
BmeT110I	CYCGRG	1 cut(s)	289
BmgT120I	GGNCC	5 cut(s)	125, 238, 455, 464, 608
BmiI	GGNNCC	5 cut(s)	172, 239, 240, 465, 1017
BmrFI	CCNGG	6 cut(s)	112, 123, 192, 373, 453, 585
BmrI	ACTGGG	1 cut(s)	888
BmsI	GCATC	2 cut(s)	558, 573
BmuI	ACTGGG	1 cut(s)	888
BpmI	CTGGAG	2 cut(s)	651, 705
BpuEI	CTTGAG	1 cut(s)	844
BsaJI	CCNNGG	2 cut(s)	371, 931
BsaXI	ACNNNNNCTCC	2 cut(s)	927, 957
Bsc4I	CCNNNNNNNGG	5 cut(s)	318, 377, 443, 617, 719
Bse118I	RCCGGY	1 cut(s)	1000
Bse1I	ACTGG	4 cut(s)	128, 184, 589, 883
Bse3DI	GCAATG	3 cut(s)	621, 840, 868
BseBI	CCWGG	6 cut(s)	112, 123, 192, 373, 453, 585
BseDI	CCNNGG	2 cut(s)	371, 931
BseGI	GGATG	2 cut(s)	210, 346
BseLI	CCNNNNNNNGG	5 cut(s)	318, 377, 443, 617, 719
BseMI	GCAATG	3 cut(s)	621, 840, 868
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	4 cut(s)	128, 184, 589, 883
BseRI	GAGGAG	1 cut(s)	948
BseXI	GCAGC	3 cut(s)	613, 634, 832
Bsh1236I	CGCG	1 cut(s)	329
BshFI	GGCC	5 cut(s)	183, 424, 436, 588, 1000
BsiHKAI	GWGCWC	1 cut(s)	745
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	1001
BslFI	GGGAC	3 cut(s)	251, 477, 971
BslI	CCNNNNNNNGG	5 cut(s)	318, 377, 443, 617, 719
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	3 cut(s)	251, 477, 971
BsnI	GGCC	5 cut(s)	183, 424, 436, 588, 1000
BsoBI	CYCGRG	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	745
Bsp143I	GATC	7 cut(s)	16, 136, 412, 634, 703, 1015, 1038
BspACI	CCGC	4 cut(s)	319, 329, 871, 883
BspANI	GGCC	5 cut(s)	183, 424, 436, 588, 1000
BspCNI	CTCAG	1 cut(s)	481
BspFNI	CGCG	1 cut(s)	329
BspLI	GGNNCC	5 cut(s)	172, 239, 240, 465, 1017
BspPI	GGATC	4 cut(s)	131, 698, 1010, 1023
BsrDI	GCAATG	3 cut(s)	621, 840, 868
BsrFI	RCCGGY	1 cut(s)	1000
BsrI	ACTGG	4 cut(s)	128, 184, 589, 883
BssAI	RCCGGY	1 cut(s)	1000
BssECI	CCNNGG	2 cut(s)	371, 931
BssMI	GATC	7 cut(s)	16, 136, 412, 634, 703, 1015, 1038
BssNAI	GTATAC	1 cut(s)	396
Bst1107I	GTATAC	1 cut(s)	396
Bst2UI	CCWGG	6 cut(s)	112, 123, 192, 373, 453, 585
Bst4CI	ACNGT	3 cut(s)	203, 476, 616
Bst6I	CTCTTC	2 cut(s)	12, 123
BstC8I	GCNNGC	3 cut(s)	321, 547, 1002
BstDEI	CTNAG	1 cut(s)	489
BstF5I	GGATG	2 cut(s)	210, 346
BstFNI	CGCG	1 cut(s)	329
BstKTI	GATC	7 cut(s)	19, 139, 415, 637, 706, 1018, 1041
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	7 cut(s)	16, 136, 412, 634, 703, 1015, 1038
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 867
BstNI	CCWGG	6 cut(s)	112, 123, 192, 373, 453, 585
BstNSI	RCATGY	1 cut(s)	537
BstSCI	CCNGG	6 cut(s)	110, 121, 190, 371, 451, 583
BstSFI	CTRYAG	1 cut(s)	754
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	3 cut(s)	613, 634, 832
BstX2I	RGATCY	2 cut(s)	412, 1015
BstXI	CCANNNNNNTGG	2 cut(s)	191, 432
BstYI	RGATCY	2 cut(s)	412, 1015
BstZ17I	GTATAC	1 cut(s)	396
BsuRI	GGCC	5 cut(s)	183, 424, 436, 588, 1000
BtgZI	GCGATG	2 cut(s)	792, 870
BtsCI	GGATG	2 cut(s)	210, 346
BtsIMutI	CAGTG	7 cut(s)	12, 135, 177, 208, 596, 876, 948
Cac8I	GCNNGC	3 cut(s)	321, 547, 1002
Cfr10I	RCCGGY	1 cut(s)	1000
Cfr13I	GGNCC	5 cut(s)	125, 238, 455, 464, 608
CseI	GACGC	1 cut(s)	927
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	3 cut(s)	534, 1012, 1036
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	7 cut(s)	18, 138, 414, 636, 705, 1017, 1040
DpnII	GATC	7 cut(s)	16, 136, 412, 634, 703, 1015, 1038
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	3 cut(s)	181, 422, 586
Eam1104I	CTCTTC	2 cut(s)	12, 123
EarI	CTCTTC	2 cut(s)	12, 123
Eco47I	GGWCC	5 cut(s)	125, 238, 455, 464, 608
Eco57I	CTGAAG	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	289
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	596
EcoRII	CCWGG	6 cut(s)	110, 121, 190, 371, 451, 583
FaeI	CATG	3 cut(s)	537, 1015, 1039
FalI	AAGNNNNNCTT	4 cut(s)	198, 230, 806, 838
FaqI	GGGAC	3 cut(s)	251, 477, 971
FatI	CATG	3 cut(s)	533, 1011, 1035
FauI	CCCGC	1 cut(s)	312
FauNDI	CATATG	2 cut(s)	71, 272
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	6 cut(s)	330, 627, 648, 846, 871, 884
FokI	GGATG	2 cut(s)	197, 333
Fsp4HI	GCNGC	6 cut(s)	330, 627, 648, 846, 871, 884
GluI	GCNGC	6 cut(s)	330, 627, 648, 846, 871, 884
GsuI	CTGGAG	2 cut(s)	651, 705
HaeIII	GGCC	5 cut(s)	183, 424, 436, 588, 1000
HapII	CCGG	1 cut(s)	1001
HgaI	GACGC	1 cut(s)	927
Hin1II	CATG	3 cut(s)	537, 1015, 1039
HindIII	AAGCTT	1 cut(s)	815
HinfI	GANTC	4 cut(s)	41, 115, 518, 948
HpaII	CCGG	1 cut(s)	1001
HphI	GGTGA	1 cut(s)	1021
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	5 cut(s)	40, 101, 309, 417, 608
Hpy188III	TCNNGA	4 cut(s)	247, 350, 952, 1060
Hpy8I	GTNNAC	1 cut(s)	396
HpyCH4III	ACNGT	3 cut(s)	203, 476, 616
HpyCH4V	TGCA	2 cut(s)	62, 406
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 867
HpyF3I	CTNAG	1 cut(s)	489
Hsp92II	CATG	3 cut(s)	537, 1015, 1039
KflI	GGGWCCC	1 cut(s)	238
KroI	GCCGGC	1 cut(s)	1000
KroNI	GCCGGC	1 cut(s)	1002
Kzo9I	GATC	7 cut(s)	16, 136, 412, 634, 703, 1015, 1038
LmnI	GCTCC	3 cut(s)	193, 485, 935
Lsp1109I	GCAGC	3 cut(s)	613, 634, 832
LweI	GCATC	2 cut(s)	558, 573
MaeIII	GTNAC	4 cut(s)	506, 653, 980, 1027
MalI	GATC	7 cut(s)	18, 138, 414, 636, 705, 1017, 1040
MboI	GATC	7 cut(s)	16, 136, 412, 634, 703, 1015, 1038
MboII	GAAGA	3 cut(s)	64, 110, 377
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	2 cut(s)	412, 1015
MhlI	GDGCHC	1 cut(s)	745
MlsI	TGGCCA	3 cut(s)	183, 424, 588
MluCI	AATT	5 cut(s)	228, 303, 336, 426, 596
MluNI	TGGCCA	3 cut(s)	183, 424, 588
MlyI	GAGTC	2 cut(s)	109, 957
MmeI	TCCRAC	2 cut(s)	332, 463
Mox20I	TGGCCA	3 cut(s)	183, 424, 588
MroNI	GCCGGC	1 cut(s)	1000
MroXI	GAANNNNTTC	1 cut(s)	303
MscI	TGGCCA	3 cut(s)	183, 424, 588
MslI	CAYNNNNRTG	2 cut(s)	351, 1034
Msp20I	TGGCCA	3 cut(s)	183, 424, 588
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	1 cut(s)	1001
MspR9I	CCNGG	6 cut(s)	112, 123, 192, 373, 453, 585
MunI	CAATTG	1 cut(s)	426
MvaI	CCWGG	6 cut(s)	112, 123, 192, 373, 453, 585
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	329, 867
NaeI	GCCGGC	1 cut(s)	1002
NdeI	CATATG	2 cut(s)	71, 272
NdeII	GATC	7 cut(s)	16, 136, 412, 634, 703, 1015, 1038
NgoMIV	GCCGGC	1 cut(s)	1000
NlaIII	CATG	3 cut(s)	537, 1015, 1039
NlaIV	GGNNCC	5 cut(s)	172, 239, 240, 465, 1017
NmuCI	GTSAC	3 cut(s)	506, 653, 1027
NspI	RCATGY	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	612
PdiI	GCCGGC	1 cut(s)	1002
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	41, 518
PflMI	CCANNNNNTGG	1 cut(s)	617
PfoI	TCCNGGA	2 cut(s)	121, 451
PkrI	GCNGC	6 cut(s)	331, 628, 649, 847, 872, 885
PleI	GAGTC	2 cut(s)	109, 956
PpsI	GAGTC	2 cut(s)	109, 956
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	6 cut(s)	110, 121, 190, 371, 451, 583
PspGI	CCWGG	6 cut(s)	110, 121, 190, 371, 451, 583
PspN4I	GGNNCC	5 cut(s)	172, 239, 240, 465, 1017
PspPI	GGNCC	5 cut(s)	125, 238, 455, 464, 608
PspPPI	RGGWCCY	1 cut(s)	238
PsuI	RGATCY	2 cut(s)	412, 1015
PvuII	CAGCTG	1 cut(s)	896
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	2 cut(s)	351, 1034
SatI	GCNGC	6 cut(s)	330, 627, 648, 846, 871, 884
Sau3AI	GATC	7 cut(s)	16, 136, 412, 634, 703, 1015, 1038
Sau96I	GGNCC	5 cut(s)	125, 238, 455, 464, 608
SchI	GAGTC	2 cut(s)	109, 957
ScrFI	CCNGG	6 cut(s)	112, 123, 192, 373, 453, 585
SduI	GDGCHC	1 cut(s)	745
SfaNI	GCATC	2 cut(s)	558, 573
SfcI	CTRYAG	1 cut(s)	754
SinI	GGWCC	5 cut(s)	125, 238, 455, 464, 608
SmiMI	CAYNNNNRTG	2 cut(s)	351, 1034
SmlI	CTYRAG	1 cut(s)	823
SmoI	CTYRAG	1 cut(s)	823
Sse9I	AATT	5 cut(s)	228, 303, 336, 426, 596
SsiI	CCGC	4 cut(s)	319, 329, 871, 883
SspI	AATATT	1 cut(s)	262
StyD4I	CCNGG	6 cut(s)	110, 121, 190, 371, 451, 583
TaaI	ACNGT	3 cut(s)	203, 476, 616
TaqI	TCGA	3 cut(s)	93, 552, 767
TasI	AATT	5 cut(s)	228, 303, 336, 426, 596
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	3 cut(s)	332, 873, 886
TfiI	GAWTC	2 cut(s)	41, 518
TscAI	CASTG	7 cut(s)	19, 135, 184, 208, 596, 883, 948
TseFI	GTSAC	3 cut(s)	506, 653, 1027
TseI	GCWGC	3 cut(s)	626, 647, 845
Tsp45I	GTSAC	3 cut(s)	506, 653, 1027
TspDTI	ATGAA	2 cut(s)	804, 879
TspRI	CASTG	7 cut(s)	19, 135, 184, 208, 596, 883, 948
Van91I	CCANNNNNTGG	1 cut(s)	617
VpaK11BI	GGWCC	5 cut(s)	125, 238, 455, 464, 608
XapI	RAATTY	2 cut(s)	336, 596
XceI	RCATGY	1 cut(s)	537
XmiI	GTMKAC	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.