Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001207

Physical Location & Seq

Genomic Coordinates Reverse (-)

17883462 .. 17886296

Gene Structure 2835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G236300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTCTCTGCTCCTCACTGATCTTCTCAACCTCAACCTCTCCGATTACACTGAAAAGATTATTGCAGAGTACATATGGATCGGTGGGTCTGGTATAGACATCAGAAGCAAAGCCAGGACTCTTCCTGCACCACTTAGCGATCCCTCAAAGCTTCCCAAGTGGAACTATGACGGTTCTAGCACTGGCCAAGCTCCTGGGAAAGACAGTGAAGTCATCCTATATCCACAAGCCATTTTCAGGGACCCATTTAGGAGGGGCAACAATATTCTTGTCATATGTGATACATACACCCCGAATGGAGAGCCAATTCCAACCAATAAGAGGGCTAATGCTGCAAAGATTTTTAGCCATCCTGATGTTGTAGCTGAAGAACCCTGGTTTGGATTAGAGCAGGAGTATACTTTGTTGCAGAAAGATGTAAAATGGCCAATTGGGTGGCCTCTCGGTGGATATCCTGGACCACAGGGGCCATACTATTGTGGGGCTGGAGCTGATAAGGCCTTTGGGCGTGACGTTGTAGATTCTCACTACAAAGCATGTCTTTATGCTGGCATCGACATCAGTGGCATCAATGGTGAAGTTATGCCTGGCCAGTGGGAATTCCAAGTTGGACCTACTGTTGGCATCTCTGCTGGAGATCAGTTATGGGCTGCTCGTTACATTTTGGAGAGGATTACAGAGATAGCTGGAGTGGTGCTTTCCTTTGATCCCAAACCTATTGAGGGCGACTGGAATGGGGCTGGTGCTCACACAAACTACAGCACCAAGTCCATGAGAAGCGATGGAGGATATGAAGTTATCAAAAAGGCAATTGAAAAGCTTGGGTTGAGGCACAAGGAACACATTGCTGCTTATGGGGATGGCAACGAGCGCCGTCTCACTGGGCGACATGAAACAGCAGACATCCAGAGGTTCATATGGGGAGTGGCAAACCGTGGAGCGTCCATAAGAGTTGGGAGGGACACGGAGAAAGATGGGAAAGGCTATTTCGAGGATCGGAGGCCTGCTTCTAACATGGATCCTTATGTTGTCACTTCCATGATTGCTGAAACTACAGTTCTCTGGAAACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Gln-synt_C Gln-synt_N

Protein Analysis

358

Amino Acids

39.45

Weight (kDa)

5.78

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48470 AT1G66200 AT1G66200 AT1G66200 AT3G17820 AT5G16570 AT5G16570 AT5G37600
fragaria_vesca	FvH4_1g30220 FvH4_3g32400 FvH4_4g36850 FvH4_5g17650
malus_domestica	MD09G1270600.v1.1 MD13G1006600.v1.1 MD14G1238700.v1.1 MD16G1001400.v1.1 MD17G1268700.v1.1
prunus_persica	Prupe.1G346600_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.5G236300_v2.0.a1
pyrus_communis	pycom09g18170 pycom14g19980 pycom17g26730
rosa_chinensis	RchiOBHm_Chr3g0491191 RchiOBHm_Chr4g0446601 RchiOBHm_Chr7g0178021
rosa_laevigata	RLG00000005481 RLG00000005647 RLG00000022854
rosa_multiflora	Rmu_sc0014162.1_g000003 Rmu_sc0015729.1_g000003 Rmu_sc0019011.1_g000005 Rmu_ssc0000144.1_g000004
rosa_roxburghii	Rroxscaffold_3G00275280 Rroxscaffold_5G00386990 Rroxscaffold_6G00393090
rosa_rugosa	Rorug03G0247600 Rorug04G0372700 Rorug06G0412400 Rorug06G0412400
rosa_samantha	Rh3BG333800 Rh3DG331200 Rh4AG434300 Rh4BG443500 Rh4CG460800 Rh4DG442300 Rh7AG011900 Rh7BG011300 Rh7CG011900 Rh7DG011900
rosa_wichuraiana	Rw3G026210 Rw3G026250 Rw4G037130 Rw7G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	398
AclWI	GGATC	6 cut(s)	86, 134, 701, 1002, 1013, 1026
AcoI	YGGCCR	3 cut(s)	184, 425, 589
AcsI	RAATTY	1 cut(s)	599
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	6 cut(s)	237, 321, 380, 446, 620, 722
AgsI	TTSAA	1 cut(s)	815
AjnI	CCWGG	5 cut(s)	113, 193, 374, 454, 586
AjuI	GAANNNNNNNTTGG	4 cut(s)	363, 395, 591, 623
AluBI	AGCT	6 cut(s)	151, 191, 365, 491, 686, 820
AluI	AGCT	6 cut(s)	151, 191, 365, 491, 686, 820
Alw21I	GWGCWC	1 cut(s)	748
Alw26I	GTCTC	2 cut(s)	9, 881
AlwI	GGATC	6 cut(s)	86, 134, 701, 1002, 1013, 1026
AoxI	GGCC	7 cut(s)	184, 425, 437, 467, 498, 589, 1001
ApeKI	GCWGC	3 cut(s)	332, 650, 848
ApoI	RAATTY	1 cut(s)	599
AspLEI	GCGC	1 cut(s)	873
AspS9I	GGNCC	4 cut(s)	241, 458, 467, 611
AsuHPI	GGTGA	1 cut(s)	587
AvaII	GGWCC	3 cut(s)	241, 458, 611
BalI	TGGCCA	3 cut(s)	186, 427, 591
BamHI	GGATCC	1 cut(s)	1018
Bbv12I	GWGCWC	1 cut(s)	748
BbvI	GCAGC	3 cut(s)	319, 637, 835
BccI	CCATC	4 cut(s)	357, 776, 854, 968
BceAI	ACGGC	1 cut(s)	858
BciT130I	CCWGG	5 cut(s)	115, 195, 376, 456, 588
BcoDI	GTCTC	2 cut(s)	9, 881
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	2 cut(s)	757, 1053
BfoI	RGCGCY	1 cut(s)	874
BisI	GCNGC	3 cut(s)	333, 651, 849
BlsI	GCNGC	3 cut(s)	334, 652, 850
Bme1390I	CCNGG	5 cut(s)	115, 195, 376, 456, 588
Bme18I	GGWCC	3 cut(s)	241, 458, 611
BmgT120I	GGNCC	4 cut(s)	241, 458, 467, 611
BmiI	GGNNCC	4 cut(s)	242, 243, 468, 1020
BmrFI	CCNGG	5 cut(s)	115, 195, 376, 456, 588
BmrI	ACTGGG	1 cut(s)	891
BmsI	GCATC	3 cut(s)	561, 576, 633
BmuI	ACTGGG	1 cut(s)	891
BpmI	CTGGAG	3 cut(s)	507, 654, 708
BsaJI	CCNNGG	3 cut(s)	194, 374, 934
Bsc4I	CCNNNNNNNGG	6 cut(s)	237, 321, 380, 446, 620, 722
Bse1I	ACTGG	4 cut(s)	187, 592, 734, 886
Bse3DI	GCAATG	1 cut(s)	843
BseBI	CCWGG	5 cut(s)	115, 195, 376, 456, 588
BseDI	CCNNGG	3 cut(s)	194, 374, 934
BseGI	GGATG	4 cut(s)	213, 349, 865, 903
BseLI	CCNNNNNNNGG	6 cut(s)	237, 321, 380, 446, 620, 722
BseMI	GCAATG	1 cut(s)	843
BseNI	ACTGG	4 cut(s)	187, 592, 734, 886
BseXI	GCAGC	3 cut(s)	319, 637, 835
BsgI	GTGCAG	1 cut(s)	111
BshFI	GGCC	7 cut(s)	186, 427, 439, 469, 500, 591, 1003
BsiHKAI	GWGCWC	1 cut(s)	748
BslFI	GGGAC	2 cut(s)	254, 974
BslI	CCNNNNNNNGG	6 cut(s)	237, 321, 380, 446, 620, 722
BsmAI	GTCTC	2 cut(s)	9, 881
BsmBI	CGTCTC	1 cut(s)	881
BsmFI	GGGAC	2 cut(s)	254, 974
BsnI	GGCC	7 cut(s)	186, 427, 439, 469, 500, 591, 1003
Bsp1286I	GDGCHC	1 cut(s)	748
Bsp143I	GATC	7 cut(s)	19, 78, 139, 637, 706, 994, 1018
BspANI	GGCC	7 cut(s)	186, 427, 439, 469, 500, 591, 1003
BspLI	GGNNCC	4 cut(s)	242, 243, 468, 1020
BspPI	GGATC	6 cut(s)	86, 134, 701, 1002, 1013, 1026
BsrDI	GCAATG	1 cut(s)	843
BsrI	ACTGG	4 cut(s)	187, 592, 734, 886
BssECI	CCNNGG	3 cut(s)	194, 374, 934
BssMI	GATC	7 cut(s)	19, 78, 139, 637, 706, 994, 1018
BssNAI	GTATAC	1 cut(s)	399
Bst1107I	GTATAC	1 cut(s)	399
Bst2UI	CCWGG	5 cut(s)	115, 195, 376, 456, 588
Bst4CI	ACNGT	5 cut(s)	173, 206, 619, 935, 1057
Bst6I	CTCTTC	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	550, 1005
BstDEI	CTNAG	1 cut(s)	134
BstDSI	CCRYGG	1 cut(s)	934
BstF5I	GGATG	4 cut(s)	213, 349, 865, 903
BstH2I	RGCGCY	1 cut(s)	874
BstHHI	GCGC	1 cut(s)	873
BstKTI	GATC	7 cut(s)	22, 81, 142, 640, 709, 997, 1021
BstMAI	GTCTC	2 cut(s)	9, 881
BstMBI	GATC	7 cut(s)	19, 78, 139, 637, 706, 994, 1018
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 497, 870
BstNI	CCWGG	5 cut(s)	115, 195, 376, 456, 588
BstNSI	RCATGY	1 cut(s)	540
BstSCI	CCNGG	5 cut(s)	113, 193, 374, 454, 586
BstSFI	CTRYAG	2 cut(s)	757, 1053
BstV1I	GCAGC	3 cut(s)	319, 637, 835
BstX2I	RGATCY	1 cut(s)	1018
BstXI	CCANNNNNNTGG	2 cut(s)	194, 435
BstYI	RGATCY	1 cut(s)	1018
BstZ17I	GTATAC	1 cut(s)	399
BsuRI	GGCC	7 cut(s)	186, 427, 439, 469, 500, 591, 1003
BtgI	CCRYGG	1 cut(s)	934
BtgZI	GCGATG	1 cut(s)	795
BtsCI	GGATG	4 cut(s)	213, 349, 865, 903
BtsIMutI	CAGTG	7 cut(s)	15, 48, 180, 211, 568, 599, 879
Cac8I	GCNNGC	2 cut(s)	550, 1005
CfoI	GCGC	1 cut(s)	873
Cfr13I	GGNCC	4 cut(s)	241, 458, 467, 611
CseI	GACGC	1 cut(s)	930
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	5 cut(s)	537, 772, 890, 1015, 1039
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	7 cut(s)	21, 80, 141, 639, 708, 996, 1020
DpnII	GATC	7 cut(s)	19, 78, 139, 637, 706, 994, 1018
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
EaeI	YGGCCR	3 cut(s)	184, 425, 589
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Eco147I	AGGCCT	2 cut(s)	500, 1003
Eco32I	GATATC	1 cut(s)	452
Eco47I	GGWCC	3 cut(s)	241, 458, 611
Eco57I	CTGAAG	1 cut(s)	387
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	599
EcoRII	CCWGG	5 cut(s)	113, 193, 374, 454, 586
EcoRV	GATATC	1 cut(s)	452
Esp3I	CGTCTC	1 cut(s)	881
FaeI	CATG	5 cut(s)	540, 775, 893, 1018, 1042
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FaqI	GGGAC	2 cut(s)	254, 974
FatI	CATG	5 cut(s)	536, 771, 889, 1014, 1038
FauNDI	CATATG	3 cut(s)	74, 275, 917
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	3 cut(s)	333, 651, 849
FokI	GGATG	4 cut(s)	200, 336, 872, 890
Fsp4HI	GCNGC	3 cut(s)	333, 651, 849
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	872
GluI	GCNGC	3 cut(s)	333, 651, 849
GsuI	CTGGAG	3 cut(s)	507, 654, 708
HaeII	RGCGCY	1 cut(s)	874
HaeIII	GGCC	7 cut(s)	186, 427, 439, 469, 500, 591, 1003
HgaI	GACGC	1 cut(s)	930
HhaI	GCGC	1 cut(s)	873
Hin1II	CATG	5 cut(s)	540, 775, 893, 1018, 1042
Hin6I	GCGC	1 cut(s)	871
HinP1I	GCGC	1 cut(s)	871
HindIII	AAGCTT	2 cut(s)	149, 818
HinfI	GANTC	2 cut(s)	118, 521
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	3 cut(s)	43, 104, 999
Hpy188III	TCNNGA	3 cut(s)	353, 907, 1063
Hpy8I	GTNNAC	1 cut(s)	399
HpyCH4III	ACNGT	5 cut(s)	173, 206, 619, 935, 1057
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	4 cut(s)	65, 128, 335, 409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 497, 870
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	5 cut(s)	540, 775, 893, 1018, 1042
HspAI	GCGC	1 cut(s)	871
KflI	GGGWCCC	1 cut(s)	241
Kzo9I	GATC	7 cut(s)	19, 78, 139, 637, 706, 994, 1018
LmnI	GCTCC	4 cut(s)	15, 196, 488, 938
Lsp1109I	GCAGC	3 cut(s)	319, 637, 835
LweI	GCATC	3 cut(s)	561, 576, 633
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	3 cut(s)	509, 656, 1030
MalI	GATC	7 cut(s)	21, 80, 141, 639, 708, 996, 1020
MboI	GATC	7 cut(s)	19, 78, 139, 637, 706, 994, 1018
MboII	GAAGA	3 cut(s)	14, 113, 380
MfeI	CAATTG	2 cut(s)	429, 810
MflI	RGATCY	1 cut(s)	1018
MhlI	GDGCHC	1 cut(s)	748
MlsI	TGGCCA	3 cut(s)	186, 427, 591
MluCI	AATT	4 cut(s)	306, 429, 599, 810
MluNI	TGGCCA	3 cut(s)	186, 427, 591
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	2 cut(s)	335, 589
Mox20I	TGGCCA	3 cut(s)	186, 427, 591
MscI	TGGCCA	3 cut(s)	186, 427, 591
MslI	CAYNNNNRTG	2 cut(s)	354, 1037
Msp20I	TGGCCA	3 cut(s)	186, 427, 591
MspR9I	CCNGG	5 cut(s)	115, 195, 376, 456, 588
MunI	CAATTG	2 cut(s)	429, 810
MvaI	CCWGG	5 cut(s)	115, 195, 376, 456, 588
MwoI	GCNNNNNNNGC	3 cut(s)	332, 497, 870
NdeI	CATATG	3 cut(s)	74, 275, 917
NdeII	GATC	7 cut(s)	19, 78, 139, 637, 706, 994, 1018
NlaIII	CATG	5 cut(s)	540, 775, 893, 1018, 1042
NlaIV	GGNNCC	4 cut(s)	242, 243, 468, 1020
NmuCI	GTSAC	2 cut(s)	509, 1030
NspI	RCATGY	1 cut(s)	540
PceI	AGGCCT	2 cut(s)	500, 1003
PfeI	GAWTC	1 cut(s)	521
PfoI	TCCNGGA	1 cut(s)	454
PkrI	GCNGC	3 cut(s)	334, 652, 850
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PpuMI	RGGWCCY	1 cut(s)	241
Psp5II	RGGWCCY	1 cut(s)	241
Psp6I	CCWGG	5 cut(s)	113, 193, 374, 454, 586
PspGI	CCWGG	5 cut(s)	113, 193, 374, 454, 586
PspN4I	GGNNCC	4 cut(s)	242, 243, 468, 1020
PspPI	GGNCC	4 cut(s)	241, 458, 467, 611
PspPPI	RGGWCCY	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	1018
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	2 cut(s)	354, 1037
SatI	GCNGC	3 cut(s)	333, 651, 849
Sau3AI	GATC	7 cut(s)	19, 78, 139, 637, 706, 994, 1018
Sau96I	GGNCC	4 cut(s)	241, 458, 467, 611
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	5 cut(s)	115, 195, 376, 456, 588
SduI	GDGCHC	1 cut(s)	748
SfaNI	GCATC	3 cut(s)	561, 576, 633
SfcI	CTRYAG	2 cut(s)	757, 1053
SinI	GGWCC	3 cut(s)	241, 458, 611
SmiMI	CAYNNNNRTG	2 cut(s)	354, 1037
Sse9I	AATT	4 cut(s)	306, 429, 599, 810
SseBI	AGGCCT	2 cut(s)	500, 1003
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	1 cut(s)	177
StuI	AGGCCT	2 cut(s)	500, 1003
StyD4I	CCNGG	5 cut(s)	113, 193, 374, 454, 586
TaaI	ACNGT	5 cut(s)	173, 206, 619, 935, 1057
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	2 cut(s)	555, 990
TasI	AATT	4 cut(s)	306, 429, 599, 810
TatI	WGTACW	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	521
TscAI	CASTG	7 cut(s)	22, 55, 187, 211, 568, 599, 886
TseFI	GTSAC	2 cut(s)	509, 1030
TseI	GCWGC	3 cut(s)	332, 650, 848
Tsp45I	GTSAC	2 cut(s)	509, 1030
TspDTI	ATGAA	3 cut(s)	807, 904, 906
TspGWI	ACGGA	1 cut(s)	980
TspRI	CASTG	7 cut(s)	22, 55, 187, 211, 568, 599, 886
VpaK11BI	GGWCC	3 cut(s)	241, 458, 611
XapI	RAATTY	1 cut(s)	599
XceI	RCATGY	1 cut(s)	540
XmiI	GTMKAC	1 cut(s)	398
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.