MD16G1001400.v1.1

Glutamine synthetase nodule isozyme-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
83672 .. 87942
4271 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1001400.v1.1.491

Sequence Viewer

Length: 1068 bp
ATGTCTCTCCTCTCTGATCTCGTCAACCTCAATCTCTCCGAATCCACTGAGAAGATCATCGCTGAATACATTTGGATTGGAGGATCTGGTTTGGACTTGAGAAGCAAAGCAAGGACACTGCCTGGACCAGTGACAGACCCAGCAAAACTGCCCAAATGGAACTACGACGGTTCAAGCACCGACCAAGCCCCAGGAGATAACAGTGAAGTCATCCTGCACCCCCAGGCTATTTTTAAGGATCCATTCAGAAGAGGAAAAAACATCCTGGTGATCTGCGATGCGTACACACCGGCGGGAGAGCCAATCCCCACCAACAAAAGATTCGACGCTGCCAAGATATTCAGTCACCCGGACGTCGTTGCCGAGGAAACCTGGTACGGCATTGAGCAAGAGTACACTCTTCTACAAAAGGATACTAAGTGGCCTCTTGGATGGCCAATTGGTGGGTTCCCAGGTCCACAGGGACCCTACTACTGCGGTGCCGGAGCAGACAAGGCCTTCGGTCGTGATATTGTGGATTCACATTACAAGGCTTGCCTCTATGCCGGAATCAACATTAGCGGTATCAACGCTGAAGTTATGCCCGGCCAGTGGGAATTTCAAGTTGGTCCTACTGTTGGTATTGCTGCTGGTGATCAGTTATGGGCTGCTAGATACATCCTTGAGAGAATTACAGAAATTGCAGGAGTTGTTCTTTCTTTGGACCCGAAACCAATCCAGGGTGATTGGAATGGTGCTGGTGCTCACGCTAACTACAGTACCAAGTCAATGAGAAACGATGGCGGAATTGACGTGATCAAGAAGGCAATCGAGAAACTGAGTCTGCGCCACAAGGAGCATATTGCTGCCTACGGAAAGGGCAACGAGAGGAGATTGACAGGTCTCCATGAGACCGCTGACATCCACACTTTCTCTTGGGGCGTGGCAAACCGAGGGGCCTCTGTCCGTATTGGTCGCGATACTGAGAAGGCTGGCAAAGGCTATTTCGAGGACAGAAGGCCGGCGTCGAACATGGATCCGTATGTTGTGACTTCCATGATCGCTGAAACCACCATTCTTTCCAAGTGA

Protein Analysis

356

Amino Acids

38.85

Weight (kDa)

6.1

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gln-synt_N PF03951 54 - 97 1.3e-07 Glutamine synthetase, beta-Grasp domain
Gln-synt_C PF00120 126 - 254 4.3e-09 Glutamine synthetase, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 357
AccB1I GGYRCC 1 cut(s) 479
AccB7I CCANNNNNTGG 1 cut(s) 443
AccII CGCG 1 cut(s) 957
AciI CCGC 5 cut(s) 293, 477, 561, 783, 894
AclWI GGATC 5 cut(s) 91, 233, 246, 1010, 1023
AcoI YGGCCR 2 cut(s) 434, 586
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 1 cut(s) 594
AcyI GRCGYC 2 cut(s) 354, 1004
AfaI GTAC 4 cut(s) 284, 377, 395, 760
AfiI CCNNNNNNNGG 4 cut(s) 443, 591, 617, 719
AgsI TTSAA 2 cut(s) 174, 602
AjiI CACGTC 1 cut(s) 793
AjnI CCWGG 7 cut(s) 121, 190, 222, 264, 371, 451, 717
AjuI GAANNNNNNNTTGG 4 cut(s) 305, 337, 588, 620
Alw21I GWGCWC 1 cut(s) 745
Alw26I GTCTC 3 cut(s) 9, 884, 887
AlwI GGATC 5 cut(s) 91, 233, 246, 1010, 1023
AoxI GGCC 6 cut(s) 422, 434, 495, 586, 936, 998
ApeKI GCWGC 4 cut(s) 329, 626, 647, 845
ApoI RAATTY 1 cut(s) 596
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
AspLEI GCGC 1 cut(s) 828
AspS9I GGNCC 6 cut(s) 125, 455, 464, 608, 703, 936
AsuC2I CCSGG 2 cut(s) 350, 585
AsuHPI GGTGA 4 cut(s) 280, 338, 644, 734
AvaII GGWCC 5 cut(s) 125, 455, 464, 608, 703
BaeI ACNNNNGTAYC 2 cut(s) 742, 775
BalI TGGCCA 1 cut(s) 436
BamHI GGATCC 2 cut(s) 238, 1015
BanI GGYRCC 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 745
BbvI GCAGC 4 cut(s) 316, 613, 634, 832
BccI CCATC 2 cut(s) 426, 773
BceAI ACGGC 1 cut(s) 394
BciT130I CCWGG 7 cut(s) 123, 192, 224, 266, 373, 453, 719
BciVI GTATCC 1 cut(s) 406
BclI TGATCA 2 cut(s) 634, 795
BcnI CCSGG 2 cut(s) 350, 585
BcoDI GTCTC 3 cut(s) 9, 884, 887
BfaI CTAG 1 cut(s) 651
BfmI CTRYAG 1 cut(s) 754
BfuI GTATCC 1 cut(s) 406
BisI GCNGC 4 cut(s) 330, 627, 648, 846
BlsI GCNGC 4 cut(s) 331, 628, 649, 847
Bme1390I CCNGG 9 cut(s) 123, 192, 224, 266, 350, 373, 453, 585, 719
Bme18I GGWCC 5 cut(s) 125, 455, 464, 608, 703
BmgBI CACGTC 1 cut(s) 793
BmgT120I GGNCC 6 cut(s) 125, 455, 464, 608, 703, 936
BmiI GGNNCC 8 cut(s) 240, 449, 465, 466, 481, 705, 937, 1017
BmrFI CCNGG 9 cut(s) 123, 192, 224, 266, 350, 373, 453, 585, 719
BmsI GCATC 1 cut(s) 268
BpuEI CTTGAG 2 cut(s) 118, 683
BpuMI CCSGG 2 cut(s) 350, 585
BsaHI GRCGYC 2 cut(s) 354, 1004
BsaI GGTCTC 2 cut(s) 884, 887
BsaJI CCNNGG 6 cut(s) 190, 222, 363, 451, 718, 931
Bsc4I CCNNNNNNNGG 4 cut(s) 443, 591, 617, 719
Bse118I RCCGGY 2 cut(s) 289, 1000
Bse1I ACTGG 2 cut(s) 128, 589
BseBI CCWGG 7 cut(s) 123, 192, 224, 266, 373, 453, 719
BseDI CCNNGG 6 cut(s) 190, 222, 363, 451, 718, 931
BseGI GGATG 5 cut(s) 210, 261, 437, 657, 900
BseLI CCNNNNNNNGG 4 cut(s) 443, 591, 617, 719
BseMII CTCAG 3 cut(s) 39, 809, 954
BseNI ACTGG 2 cut(s) 128, 589
BseRI GAGGAG 1 cut(s) 883
BseXI GCAGC 4 cut(s) 316, 613, 634, 832
BseYI CCCAGC 1 cut(s) 139
BsgI GTGCAG 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 957
Bsh1285I CGRYCG 1 cut(s) 505
BshFI GGCC 6 cut(s) 424, 436, 497, 588, 938, 1000
BshNI GGYRCC 1 cut(s) 479
BsiEI CGRYCG 1 cut(s) 505
BsiHKAI GWGCWC 1 cut(s) 745
BsiSI CCGG 6 cut(s) 290, 350, 483, 546, 585, 1001
BslFI GGGAC 1 cut(s) 477
BslI CCNNNNNNNGG 4 cut(s) 443, 591, 617, 719
BsmAI GTCTC 3 cut(s) 9, 884, 887
BsmFI GGGAC 1 cut(s) 477
BsnI GGCC 6 cut(s) 424, 436, 497, 588, 938, 1000
Bso31I GGTCTC 2 cut(s) 884, 887
Bsp1286I GDGCHC 1 cut(s) 745
Bsp143I GATC 9 cut(s) 16, 54, 83, 238, 270, 634, 795, 1015, 1038
Bsp68I TCGCGA 1 cut(s) 957
BspACI CCGC 5 cut(s) 293, 477, 561, 783, 894
BspANI GGCC 6 cut(s) 424, 436, 497, 588, 938, 1000
BspCNI CTCAG 3 cut(s) 40, 810, 955
BspFNI CGCG 1 cut(s) 957
BspLI GGNNCC 8 cut(s) 240, 449, 465, 466, 481, 705, 937, 1017
BspPI GGATC 5 cut(s) 91, 233, 246, 1010, 1023
BspT107I GGYRCC 1 cut(s) 479
BspTNI GGTCTC 2 cut(s) 884, 887
BsrFI RCCGGY 2 cut(s) 289, 1000
BsrI ACTGG 2 cut(s) 128, 589
BssAI RCCGGY 2 cut(s) 289, 1000
BssECI CCNNGG 6 cut(s) 190, 222, 363, 451, 718, 931
BssMI GATC 9 cut(s) 16, 54, 83, 238, 270, 634, 795, 1015, 1038
BssNI GRCGYC 2 cut(s) 354, 1004
Bst2UI CCWGG 7 cut(s) 123, 192, 224, 266, 373, 453, 719
Bst4CI ACNGT 4 cut(s) 170, 203, 616, 758
Bst6I CTCTTC 2 cut(s) 244, 405
BstACI GRCGYC 2 cut(s) 354, 1004
BstC8I GCNNGC 3 cut(s) 535, 973, 1002
BstDEI CTNAG 4 cut(s) 48, 417, 818, 963
BstF5I GGATG 5 cut(s) 210, 261, 437, 657, 900
BstFNI CGCG 1 cut(s) 957
BstHHI GCGC 1 cut(s) 828
BstKTI GATC 9 cut(s) 19, 57, 86, 241, 273, 637, 798, 1018, 1041
BstMAI GTCTC 3 cut(s) 9, 884, 887
BstMBI GATC 9 cut(s) 16, 54, 83, 238, 270, 634, 795, 1015, 1038
BstMCI CGRYCG 1 cut(s) 505
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNI CCWGG 7 cut(s) 123, 192, 224, 266, 373, 453, 719
BstSCI CCNGG 9 cut(s) 121, 190, 222, 264, 348, 371, 451, 583, 717
BstSFI CTRYAG 1 cut(s) 754
BstUI CGCG 1 cut(s) 957
BstV1I GCAGC 4 cut(s) 316, 613, 634, 832
BstX2I RGATCY 3 cut(s) 83, 238, 1015
BstYI RGATCY 3 cut(s) 83, 238, 1015
BsuI GTATCC 1 cut(s) 406
BsuRI GGCC 6 cut(s) 424, 436, 497, 588, 938, 1000
BtgZI GCGATG 2 cut(s) 43, 291
BtrI CACGTC 1 cut(s) 793
BtsCI GGATG 5 cut(s) 210, 261, 437, 657, 900
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 5 cut(s) 45, 116, 135, 208, 596
BtuMI TCGCGA 1 cut(s) 957
Cac8I GCNNGC 3 cut(s) 535, 973, 1002
CfoI GCGC 1 cut(s) 828
Cfr10I RCCGGY 2 cut(s) 289, 1000
Cfr13I GGNCC 6 cut(s) 125, 455, 464, 608, 703, 936
CseI GACGC 2 cut(s) 335, 993
CsiI ACCWGGT 1 cut(s) 371
Csp6I GTAC 4 cut(s) 283, 376, 394, 759
CviAII CATG 3 cut(s) 887, 1012, 1036
CviQI GTAC 4 cut(s) 283, 376, 394, 759
DdeI CTNAG 4 cut(s) 48, 417, 818, 963
DpnI GATC 9 cut(s) 18, 56, 85, 240, 272, 636, 797, 1017, 1040
DpnII GATC 9 cut(s) 16, 54, 83, 238, 270, 634, 795, 1015, 1038
EaeI YGGCCR 2 cut(s) 434, 586
Eam1104I CTCTTC 2 cut(s) 244, 405
EarI CTCTTC 2 cut(s) 244, 405
EciI GGCGGA 1 cut(s) 798
Eco147I AGGCCT 1 cut(s) 497
Eco31I GGTCTC 2 cut(s) 884, 887
Eco47I GGWCC 5 cut(s) 125, 455, 464, 608, 703
Eco57I CTGAAG 1 cut(s) 594
EcoO109I RGGNCCY 2 cut(s) 464, 936
EcoRII CCWGG 7 cut(s) 121, 190, 222, 264, 371, 451, 717
FaeI CATG 3 cut(s) 890, 1015, 1039
FaiI YATR 8 cut(s) 543, 581, 643, 840, 888, 1013, 1023, 1037
FaqI GGGAC 1 cut(s) 477
FatI CATG 3 cut(s) 886, 1011, 1035
FauI CCCGC 1 cut(s) 286
FbaI TGATCA 2 cut(s) 634, 795
Fnu4HI GCNGC 4 cut(s) 330, 627, 648, 846
FokI GGATG 5 cut(s) 197, 248, 444, 644, 887
Fsp4HI GCNGC 4 cut(s) 330, 627, 648, 846
FspBI CTAG 1 cut(s) 651
GlaI GCGC 1 cut(s) 827
GluI GCNGC 4 cut(s) 330, 627, 648, 846
GsaI CCCAGC 1 cut(s) 143
HaeIII GGCC 6 cut(s) 424, 436, 497, 588, 938, 1000
HapII CCGG 6 cut(s) 290, 350, 483, 546, 585, 1001
HgaI GACGC 2 cut(s) 335, 993
HhaI GCGC 1 cut(s) 828
Hin1I GRCGYC 2 cut(s) 354, 1004
Hin1II CATG 3 cut(s) 890, 1015, 1039
Hin6I GCGC 1 cut(s) 826
HinP1I GCGC 1 cut(s) 826
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 5 cut(s) 41, 321, 518, 549, 820
HpaII CCGG 6 cut(s) 290, 350, 483, 546, 585, 1001
HphI GGTGA 4 cut(s) 280, 338, 644, 734
Hpy166II GTNNAC 4 cut(s) 25, 285, 396, 458
Hpy188I TCNGA 3 cut(s) 16, 40, 248
Hpy188III TCNNGA 4 cut(s) 506, 799, 811, 956
Hpy8I GTNNAC 4 cut(s) 25, 285, 396, 458
Hpy99I CGWCG 4 cut(s) 170, 329, 359, 1009
HpyAV CCTTC 4 cut(s) 508, 796, 961, 990
HpyCH4III ACNGT 4 cut(s) 170, 203, 616, 758
HpyCH4IV ACGT 2 cut(s) 354, 792
HpyCH4V TGCA 2 cut(s) 217, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 4 cut(s) 48, 417, 818, 963
HpySE526I ACGT 2 cut(s) 354, 792
Hsp92I GRCGYC 2 cut(s) 354, 1004
Hsp92II CATG 3 cut(s) 890, 1015, 1039
HspAI GCGC 1 cut(s) 826
KflI GGGWCCC 1 cut(s) 464
KroI GCCGGC 1 cut(s) 1000
KroNI GCCGGC 1 cut(s) 1002
Ksp22I TGATCA 2 cut(s) 634, 795
Kzo9I GATC 9 cut(s) 16, 54, 83, 238, 270, 634, 795, 1015, 1038
LmnI GCTCC 2 cut(s) 485, 835
Lsp1109I GCAGC 4 cut(s) 316, 613, 634, 832
LweI GCATC 1 cut(s) 268
MabI ACCWGGT 1 cut(s) 371
MaeI CTAG 1 cut(s) 651
MaeII ACGT 2 cut(s) 354, 792
MaeIII GTNAC 3 cut(s) 130, 344, 1027
MalI GATC 9 cut(s) 18, 56, 85, 240, 272, 636, 797, 1017, 1040
MboI GATC 9 cut(s) 16, 54, 83, 238, 270, 634, 795, 1015, 1038
MboII GAAGA 3 cut(s) 64, 261, 392
MfeI CAATTG 1 cut(s) 438
MflI RGATCY 3 cut(s) 83, 238, 1015
MhlI GDGCHC 1 cut(s) 745
MlsI TGGCCA 1 cut(s) 436
MluCI AATT 5 cut(s) 438, 596, 669, 678, 786
MluNI TGGCCA 1 cut(s) 436
MlyI GAGTC 1 cut(s) 829
Mox20I TGGCCA 1 cut(s) 436
MroNI GCCGGC 1 cut(s) 1000
MscI TGGCCA 1 cut(s) 436
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 1 cut(s) 266
Msp20I TGGCCA 1 cut(s) 436
MspA1I CMGCKG 1 cut(s) 896
MspI CCGG 6 cut(s) 290, 350, 483, 546, 585, 1001
MspR9I CCNGG 9 cut(s) 123, 192, 224, 266, 350, 373, 453, 585, 719
MunI CAATTG 1 cut(s) 438
MvaI CCWGG 7 cut(s) 123, 192, 224, 266, 373, 453, 719
MvnI CGCG 1 cut(s) 957
MwoI GCNNNNNNNGC 1 cut(s) 494
NaeI GCCGGC 1 cut(s) 1002
NciI CCSGG 2 cut(s) 350, 585
NdeII GATC 9 cut(s) 16, 54, 83, 238, 270, 634, 795, 1015, 1038
NgoMIV GCCGGC 1 cut(s) 1000
NlaIII CATG 3 cut(s) 890, 1015, 1039
NlaIV GGNNCC 8 cut(s) 240, 449, 465, 466, 481, 705, 937, 1017
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 3 cut(s) 130, 344, 1027
NruI TCGCGA 1 cut(s) 957
PceI AGGCCT 1 cut(s) 497
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PdiI GCCGGC 1 cut(s) 1002
PfeI GAWTC 4 cut(s) 41, 321, 518, 549
PflMI CCANNNNNTGG 1 cut(s) 443
PkrI GCNGC 4 cut(s) 331, 628, 649, 847
PleI GAGTC 1 cut(s) 828
PpsI GAGTC 1 cut(s) 828
PpuMI RGGWCCY 1 cut(s) 464
Psp5II RGGWCCY 1 cut(s) 464
Psp6I CCWGG 7 cut(s) 121, 190, 222, 264, 371, 451, 717
PspFI CCCAGC 1 cut(s) 139
PspGI CCWGG 7 cut(s) 121, 190, 222, 264, 371, 451, 717
PspN4I GGNNCC 8 cut(s) 240, 449, 465, 466, 481, 705, 937, 1017
PspPI GGNCC 6 cut(s) 125, 455, 464, 608, 703, 936
PspPPI RGGWCCY 1 cut(s) 464
PsuI RGATCY 3 cut(s) 83, 238, 1015
RruI TCGCGA 1 cut(s) 957
RsaI GTAC 4 cut(s) 284, 377, 395, 760
RsaNI GTAC 4 cut(s) 283, 376, 394, 759
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 4 cut(s) 330, 627, 648, 846
Sau3AI GATC 9 cut(s) 16, 54, 83, 238, 270, 634, 795, 1015, 1038
Sau96I GGNCC 6 cut(s) 125, 455, 464, 608, 703, 936
SchI GAGTC 1 cut(s) 829
ScrFI CCNGG 9 cut(s) 123, 192, 224, 266, 350, 373, 453, 585, 719
SduI GDGCHC 1 cut(s) 745
SetI ASST 6 cut(s) 30, 357, 374, 457, 795, 883
SexAI ACCWGGT 1 cut(s) 371
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 754
SgrAI CRCCGGYG 1 cut(s) 289
SinI GGWCC 5 cut(s) 125, 455, 464, 608, 703
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 2 cut(s) 97, 662
SmoI CTYRAG 2 cut(s) 97, 662
Sse9I AATT 5 cut(s) 438, 596, 669, 678, 786
SseBI AGGCCT 1 cut(s) 497
SsiI CCGC 5 cut(s) 293, 477, 561, 783, 894
SspMI CTAG 1 cut(s) 651
StuI AGGCCT 1 cut(s) 497
StyD4I CCNGG 9 cut(s) 121, 190, 222, 264, 348, 371, 451, 583, 717
TaaI ACNGT 4 cut(s) 170, 203, 616, 758
TaiI ACGT 2 cut(s) 357, 795
TaqI TCGA 4 cut(s) 324, 810, 987, 1007
TaqII GACCGA 1 cut(s) 491
TasI AATT 5 cut(s) 438, 596, 669, 678, 786
TatI WGTACW 1 cut(s) 393
TfiI GAWTC 4 cut(s) 41, 321, 518, 549
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 5 cut(s) 52, 123, 135, 208, 596
TseFI GTSAC 3 cut(s) 130, 344, 1027
TseI GCWGC 4 cut(s) 329, 626, 647, 845
Tsp45I GTSAC 3 cut(s) 130, 344, 1027
TspGWI ACGGA 3 cut(s) 867, 935, 1008
TspRI CASTG 5 cut(s) 52, 123, 135, 208, 596
Van91I CCANNNNNTGG 1 cut(s) 443
VpaK11BI GGWCC 5 cut(s) 125, 455, 464, 608, 703
XapI RAATTY 1 cut(s) 596
XspI CTAG 1 cut(s) 651
ZraI GACGTC 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.