Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015729.1

Orthogroup ID

OG0001207

Physical Location & Seq

Genomic Coordinates Reverse (-)

8948 .. 10418

Gene Structure 1471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015729.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 853 bp

cccacaagcaatctacagggacccatttaggagaggcaacaacatccttgtgatatgtgatacttacacaccagctggagaaccaattccaaccaacaagagggctaaggctgcaaagatcttcagccatcctgatgttgttgctgaagagccctggtatggcttagagcaagagtacacactattacagaaagatgtacaatggccaattgggtggcctctgggtggatatcctggagcacagggaccgtactactgtggtgttggcgctgataaggcctttggccgtgacattgtagattctcactacaaagcttgtctttatgccggtattgacatcagtggcatcaatggtgaagttatgcctggtcagtgggaattccaagttggaccaacagttggcatcgctgctggagatcaattatgggcagcgcgttacattttggagaggatcactgagatagctggagtggtggtttcatttgatccgaaaccaattcctggtgactggaacggtgctggtgcacacactaatttcagcaccaagaccatgagaaaggaaggaggctatgaggtgatcaagaaggcaattgggaagcttggattgaggcacaaggaacacattgccgcttatggcgaaggcaatgagcgccgcctcaccggacgacatgaaacagcagacattgacacattcgtatggggtgtggcgaaccgtggagcttcgataagagttgggagggacaccgagaaagaaggaaagggctattttgaggaccggaggccggcttctaacatggatccttatgttgtcacctccatgattgctgaaacaacactgctctggaaaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Gln-synt_C Gln-synt_N

Protein Analysis

283

Amino Acids

31.26

Weight (kDa)

6.37

Isoelectric Point (pI)

28.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48470 AT1G66200 AT1G66200 AT1G66200 AT3G17820 AT5G16570 AT5G16570 AT5G37600
fragaria_vesca	FvH4_1g30220 FvH4_3g32400 FvH4_4g36850 FvH4_5g17650
malus_domestica	MD09G1270600.v1.1 MD13G1006600.v1.1 MD14G1238700.v1.1 MD16G1001400.v1.1 MD17G1268700.v1.1
prunus_persica	Prupe.1G346600_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.5G236300_v2.0.a1
pyrus_communis	pycom09g18170 pycom14g19980 pycom17g26730
rosa_chinensis	RchiOBHm_Chr3g0491191 RchiOBHm_Chr4g0446601 RchiOBHm_Chr7g0178021
rosa_laevigata	RLG00000005481 RLG00000005647 RLG00000022854
rosa_multiflora	Rmu_sc0014162.1_g000003 Rmu_sc0015729.1_g000003 Rmu_sc0019011.1_g000005 Rmu_ssc0000144.1_g000004
rosa_roxburghii	Rroxscaffold_3G00275280 Rroxscaffold_5G00386990 Rroxscaffold_6G00393090
rosa_rugosa	Rorug03G0247600 Rorug04G0372700 Rorug06G0412400 Rorug06G0412400
rosa_samantha	Rh3BG333800 Rh3DG331200 Rh4AG434300 Rh4BG443500 Rh4CG460800 Rh4DG442300 Rh7AG011900 Rh7BG011300 Rh7CG011900 Rh7DG011900
rosa_wichuraiana	Rw3G026210 Rw3G026250 Rw4G037130 Rw7G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	399, 501
AccII	CGCG	1 cut(s)	434
AciI	CCGC	2 cut(s)	628, 653
AclWI	GGATC	4 cut(s)	459, 480, 792, 805
AcoI	YGGCCR	2 cut(s)	204, 284
AcsI	RAATTY	1 cut(s)	378
AcuI	CTGAAG	2 cut(s)	107, 166
AfaI	GTAC	3 cut(s)	177, 199, 252
AfiI	CCNNNNNNNGG	6 cut(s)	100, 159, 225, 399, 501, 782
AjnI	CCWGG	4 cut(s)	153, 233, 365, 500
AjuI	GAANNNNNNNTTGG	2 cut(s)	370, 402
AluBI	AGCT	5 cut(s)	75, 315, 465, 599, 720
AluI	AGCT	5 cut(s)	75, 315, 465, 599, 720
Alw21I	GWGCWC	2 cut(s)	242, 527
Alw44I	GTGCAC	1 cut(s)	523
AlwI	GGATC	4 cut(s)	459, 480, 792, 805
AoxI	GGCC	5 cut(s)	204, 216, 277, 284, 780
ApaLI	GTGCAC	1 cut(s)	523
ApeKI	GCWGC	3 cut(s)	111, 408, 429
ApoI	RAATTY	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	85
AspLEI	GCGC	3 cut(s)	270, 434, 652
AspS9I	GGNCC	4 cut(s)	20, 246, 390, 773
AsuHPI	GGTGA	5 cut(s)	366, 516, 587, 650, 803
AvaII	GGWCC	4 cut(s)	20, 246, 390, 773
BaeGI	GKGCMC	1 cut(s)	527
BalI	TGGCCA	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	797
BanII	GRGCYC	1 cut(s)	154
Bbv12I	GWGCWC	2 cut(s)	242, 527
BbvI	GCAGC	3 cut(s)	98, 395, 441
BccI	CCATC	1 cut(s)	136
BceAI	ACGGC	1 cut(s)	271
BciT130I	CCWGG	4 cut(s)	155, 235, 367, 502
BclI	TGATCA	1 cut(s)	577
BfmI	CTRYAG	1 cut(s)	14
BfoI	RGCGCY	2 cut(s)	271, 653
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	5 cut(s)	112, 409, 430, 628, 653
BlsI	GCNGC	5 cut(s)	113, 410, 431, 629, 654
Bme1390I	CCNGG	4 cut(s)	155, 235, 367, 502
Bme18I	GGWCC	4 cut(s)	20, 246, 390, 773
BmgT120I	GGNCC	4 cut(s)	20, 246, 390, 773
BmiI	GGNNCC	4 cut(s)	21, 22, 247, 799
BmrFI	CCNGG	4 cut(s)	155, 235, 367, 502
BmsI	GCATC	2 cut(s)	355, 412
BpmI	CTGGAG	4 cut(s)	97, 256, 433, 487
Bpu10I	CCTNAGC	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	153, 713
BsaWI	WCCGGW	2 cut(s)	660, 775
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	6 cut(s)	100, 159, 225, 399, 501, 782
Bse118I	RCCGGY	2 cut(s)	327, 782
Bse1I	ACTGG	1 cut(s)	513
Bse3DI	GCAATG	2 cut(s)	622, 650
BseBI	CCWGG	4 cut(s)	155, 235, 367, 502
BseDI	CCNNGG	2 cut(s)	153, 713
BseGI	GGATG	2 cut(s)	43, 128
BseLI	CCNNNNNNNGG	6 cut(s)	100, 159, 225, 399, 501, 782
BseMI	GCAATG	2 cut(s)	622, 650
BseMII	CTCAG	1 cut(s)	448
BseNI	ACTGG	1 cut(s)	513
BseSI	GKGCMC	1 cut(s)	527
BseXI	GCAGC	3 cut(s)	98, 395, 441
Bsh1236I	CGCG	1 cut(s)	434
BshFI	GGCC	5 cut(s)	206, 218, 279, 286, 782
BsiHKAI	GWGCWC	2 cut(s)	242, 527
BsiSI	CCGG	4 cut(s)	328, 661, 776, 783
BslFI	GGGAC	3 cut(s)	33, 259, 753
BslI	CCNNNNNNNGG	6 cut(s)	100, 159, 225, 399, 501, 782
BsmFI	GGGAC	3 cut(s)	33, 259, 753
BsnI	GGCC	5 cut(s)	206, 218, 279, 286, 782
Bsp1286I	GDGCHC	3 cut(s)	154, 242, 527
Bsp1407I	TGTACA	1 cut(s)	197
Bsp143I	GATC	6 cut(s)	118, 416, 451, 485, 577, 797
BspACI	CCGC	2 cut(s)	628, 653
BspANI	GGCC	5 cut(s)	206, 218, 279, 286, 782
BspCNI	CTCAG	1 cut(s)	449
BspFNI	CGCG	1 cut(s)	434
BspLI	GGNNCC	4 cut(s)	21, 22, 247, 799
BspPI	GGATC	4 cut(s)	459, 480, 792, 805
BspQI	GCTCTTC	1 cut(s)	142
BsrDI	GCAATG	2 cut(s)	622, 650
BsrFI	RCCGGY	2 cut(s)	327, 782
BsrGI	TGTACA	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	513
BssAI	RCCGGY	2 cut(s)	327, 782
BssECI	CCNNGG	2 cut(s)	153, 713
BssMI	GATC	6 cut(s)	118, 416, 451, 485, 577, 797
Bst2UI	CCWGG	4 cut(s)	155, 235, 367, 502
Bst4CI	ACNGT	5 cut(s)	250, 258, 398, 516, 714
Bst6I	CTCTTC	1 cut(s)	142
BstAUI	TGTACA	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	784
BstDEI	CTNAG	3 cut(s)	106, 164, 457
BstDSI	CCRYGG	1 cut(s)	713
BstF5I	GGATG	2 cut(s)	43, 128
BstFNI	CGCG	1 cut(s)	434
BstH2I	RGCGCY	2 cut(s)	271, 653
BstHHI	GCGC	3 cut(s)	270, 434, 652
BstKTI	GATC	6 cut(s)	121, 419, 454, 488, 580, 800
BstMBI	GATC	6 cut(s)	118, 416, 451, 485, 577, 797
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 276, 649
BstNI	CCWGG	4 cut(s)	155, 235, 367, 502
BstSCI	CCNGG	4 cut(s)	153, 233, 365, 500
BstSFI	CTRYAG	1 cut(s)	14
BstSLI	GKGCMC	1 cut(s)	527
BstUI	CGCG	1 cut(s)	434
BstV1I	GCAGC	3 cut(s)	98, 395, 441
BstX2I	RGATCY	2 cut(s)	118, 797
BstXI	CCANNNNNNTGG	1 cut(s)	214
BstYI	RGATCY	2 cut(s)	118, 797
BsuRI	GGCC	5 cut(s)	206, 218, 279, 286, 782
BtgI	CCRYGG	1 cut(s)	713
BtgZI	GCGATG	1 cut(s)	389
BtsCI	GGATG	2 cut(s)	43, 128
BtsI	GCAGTG	1 cut(s)	834
BtsIMutI	CAGTG	4 cut(s)	347, 378, 454, 834
Cac8I	GCNNGC	1 cut(s)	784
CfoI	GCGC	3 cut(s)	270, 434, 652
Cfr10I	RCCGGY	2 cut(s)	327, 782
Cfr13I	GGNCC	4 cut(s)	20, 246, 390, 773
Csp6I	GTAC	3 cut(s)	176, 198, 251
CviAII	CATG	4 cut(s)	551, 669, 794, 818
CviQI	GTAC	3 cut(s)	176, 198, 251
DdeI	CTNAG	3 cut(s)	106, 164, 457
DpnI	GATC	6 cut(s)	120, 418, 453, 487, 579, 799
DpnII	GATC	6 cut(s)	118, 416, 451, 485, 577, 797
EaeI	YGGCCR	2 cut(s)	204, 284
Eam1104I	CTCTTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	142
Eco147I	AGGCCT	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	154
Eco32I	GATATC	1 cut(s)	231
Eco47I	GGWCC	4 cut(s)	20, 246, 390, 773
Eco57I	CTGAAG	2 cut(s)	107, 166
EcoO109I	RGGNCCY	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	378
EcoRII	CCWGG	4 cut(s)	153, 233, 365, 500
EcoRV	GATATC	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	154
FaeI	CATG	4 cut(s)	554, 672, 797, 821
FalI	AAGNNNNNCTT	2 cut(s)	304, 336
FaqI	GGGAC	3 cut(s)	33, 259, 753
FatI	CATG	4 cut(s)	550, 668, 793, 817
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	5 cut(s)	112, 409, 430, 628, 653
FokI	GGATG	2 cut(s)	30, 115
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	5 cut(s)	112, 409, 430, 628, 653
GlaI	GCGC	3 cut(s)	269, 433, 651
GluI	GCNGC	5 cut(s)	112, 409, 430, 628, 653
GsuI	CTGGAG	4 cut(s)	97, 256, 433, 487
HaeII	RGCGCY	2 cut(s)	271, 653
HaeIII	GGCC	5 cut(s)	206, 218, 279, 286, 782
HapII	CCGG	4 cut(s)	328, 661, 776, 783
HhaI	GCGC	3 cut(s)	270, 434, 652
Hin1II	CATG	4 cut(s)	554, 672, 797, 821
Hin6I	GCGC	3 cut(s)	268, 432, 650
HinP1I	GCGC	3 cut(s)	268, 432, 650
HindIII	AAGCTT	2 cut(s)	313, 597
HinfI	GANTC	1 cut(s)	300
HpaII	CCGG	4 cut(s)	328, 661, 776, 783
HphI	GGTGA	5 cut(s)	366, 516, 587, 650, 803
Hpy166II	GTNNAC	2 cut(s)	178, 525
Hpy188I	TCNGA	1 cut(s)	490
Hpy188III	TCNNGA	3 cut(s)	132, 581, 842
Hpy8I	GTNNAC	2 cut(s)	178, 525
HpyAV	CCTTC	4 cut(s)	555, 578, 633, 747
HpyCH4III	ACNGT	5 cut(s)	250, 258, 398, 516, 714
HpyCH4V	TGCA	2 cut(s)	114, 525
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 276, 649
HpyF3I	CTNAG	3 cut(s)	106, 164, 457
Hsp92II	CATG	4 cut(s)	554, 672, 797, 821
HspAI	GCGC	3 cut(s)	268, 432, 650
KflI	GGGWCCC	1 cut(s)	20
KroI	GCCGGC	1 cut(s)	782
KroNI	GCCGGC	1 cut(s)	784
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	6 cut(s)	118, 416, 451, 485, 577, 797
LguI	GCTCTTC	1 cut(s)	142
LmnI	GCTCC	2 cut(s)	237, 717
Lsp1109I	GCAGC	3 cut(s)	98, 395, 441
LweI	GCATC	2 cut(s)	355, 412
MaeIII	GTNAC	4 cut(s)	288, 435, 504, 809
MalI	GATC	6 cut(s)	120, 418, 453, 487, 579, 799
MboI	GATC	6 cut(s)	118, 416, 451, 485, 577, 797
MboII	GAAGA	2 cut(s)	113, 159
MfeI	CAATTG	2 cut(s)	208, 589
MflI	RGATCY	2 cut(s)	118, 797
MhlI	GDGCHC	3 cut(s)	154, 242, 527
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	7 cut(s)	85, 208, 378, 420, 496, 533, 589
MluNI	TGGCCA	1 cut(s)	206
MmeI	TCCRAC	2 cut(s)	114, 368
Mox20I	TGGCCA	1 cut(s)	206
MroNI	GCCGGC	1 cut(s)	782
MroXI	GAANNNNTTC	1 cut(s)	85
MscI	TGGCCA	1 cut(s)	206
MslI	CAYNNNNRTG	4 cut(s)	48, 133, 695, 816
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	75
MspI	CCGG	4 cut(s)	328, 661, 776, 783
MspR9I	CCNGG	4 cut(s)	155, 235, 367, 502
MunI	CAATTG	2 cut(s)	208, 589
MvaI	CCWGG	4 cut(s)	155, 235, 367, 502
MvnI	CGCG	1 cut(s)	434
MwoI	GCNNNNNNNGC	3 cut(s)	111, 276, 649
NaeI	GCCGGC	1 cut(s)	784
NdeII	GATC	6 cut(s)	118, 416, 451, 485, 577, 797
NgoMIV	GCCGGC	1 cut(s)	782
NlaIII	CATG	4 cut(s)	554, 672, 797, 821
NlaIV	GGNNCC	4 cut(s)	21, 22, 247, 799
NmuCI	GTSAC	3 cut(s)	288, 504, 809
PceI	AGGCCT	1 cut(s)	279
PciSI	GCTCTTC	1 cut(s)	142
PdiI	GCCGGC	1 cut(s)	784
PdmI	GAANNNNTTC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	300
PflMI	CCANNNNNTGG	2 cut(s)	399, 501
PfoI	TCCNGGA	1 cut(s)	233
PkrI	GCNGC	5 cut(s)	113, 410, 431, 629, 654
PpuMI	RGGWCCY	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	20
Psp6I	CCWGG	4 cut(s)	153, 233, 365, 500
PspGI	CCWGG	4 cut(s)	153, 233, 365, 500
PspN4I	GGNNCC	4 cut(s)	21, 22, 247, 799
PspPI	GGNCC	4 cut(s)	20, 246, 390, 773
PspPPI	RGGWCCY	1 cut(s)	20
PsuI	RGATCY	2 cut(s)	118, 797
PvuII	CAGCTG	1 cut(s)	75
RsaI	GTAC	3 cut(s)	177, 199, 252
RsaNI	GTAC	3 cut(s)	176, 198, 251
RseI	CAYNNNNRTG	4 cut(s)	48, 133, 695, 816
SapI	GCTCTTC	1 cut(s)	142
SatI	GCNGC	5 cut(s)	112, 409, 430, 628, 653
Sau3AI	GATC	6 cut(s)	118, 416, 451, 485, 577, 797
Sau96I	GGNCC	4 cut(s)	20, 246, 390, 773
ScrFI	CCNGG	4 cut(s)	155, 235, 367, 502
SduI	GDGCHC	3 cut(s)	154, 242, 527
SetI	ASST	7 cut(s)	77, 317, 467, 577, 601, 722, 816
SfaNI	GCATC	2 cut(s)	355, 412
SfcI	CTRYAG	1 cut(s)	14
SinI	GGWCC	4 cut(s)	20, 246, 390, 773
SmiMI	CAYNNNNRTG	4 cut(s)	48, 133, 695, 816
Sse9I	AATT	7 cut(s)	85, 208, 378, 420, 496, 533, 589
SseBI	AGGCCT	1 cut(s)	279
SsiI	CCGC	2 cut(s)	628, 653
StuI	AGGCCT	1 cut(s)	279
StyD4I	CCNGG	4 cut(s)	153, 233, 365, 500
TaaI	ACNGT	5 cut(s)	250, 258, 398, 516, 714
TaqI	TCGA	1 cut(s)	723
TasI	AATT	7 cut(s)	85, 208, 378, 420, 496, 533, 589
TatI	WGTACW	2 cut(s)	175, 197
TauI	GCSGC	2 cut(s)	630, 655
TfiI	GAWTC	1 cut(s)	300
TscAI	CASTG	4 cut(s)	347, 378, 461, 841
TseFI	GTSAC	3 cut(s)	288, 504, 809
TseI	GCWGC	3 cut(s)	111, 408, 429
Tsp45I	GTSAC	3 cut(s)	288, 504, 809
TspDTI	ATGAA	2 cut(s)	469, 685
TspRI	CASTG	4 cut(s)	347, 378, 461, 841
Van91I	CCANNNNNTGG	2 cut(s)	399, 501
VneI	GTGCAC	1 cut(s)	523
VpaK11BI	GGWCC	4 cut(s)	20, 246, 390, 773
XapI	RAATTY	1 cut(s)	378
XmnI	GAANNNNTTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.