Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001207

Physical Location & Seq

Genomic Coordinates Forward (+)

54407273 .. 54407692

Gene Structure 420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0372700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGATATCGCCGGAAACACGTGGCAGCACTTGAAAACAAGCCCTAGCTTTGCTGATGCTGCCATGGGAAGAATTACACGAGGAACAAAGGTTTTAGCGGAAGGTGGTTACTATAGGATCTTTCGATCGACCTTTGAGATTGTTCCTGAGGAGCAACTTCAAAATTCATTTGCATGTTACTTATGTACGTCGTACGGTCCAGTAATGGGAGTGTTATATGTATCTACTGCAAAGATTGCTTATTGCAGTGATAATCCCATTTTATACAAAGCTGAAAACCAGACTGAATGTAGCTATTATAAGGTGGTTATCCCACTGCATCAGCTTAAAGCAGTTAATTCTTCGTTCAGCAGATCCAATCCTGGTGAAAAGTACATACATAAAAAAAATTTAAAAAAAAAAAAAAAAAATCTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Gln-synt_C Gln-synt_N

Protein Analysis

139

Amino Acids

15.71

Weight (kDa)

9.43

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAM	PF02893	40 - 128	1.6e-10	GRAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48470 AT1G66200 AT1G66200 AT1G66200 AT3G17820 AT5G16570 AT5G16570 AT5G37600
fragaria_vesca	FvH4_1g30220 FvH4_3g32400 FvH4_4g36850 FvH4_5g17650
malus_domestica	MD09G1270600.v1.1 MD13G1006600.v1.1 MD14G1238700.v1.1 MD16G1001400.v1.1 MD17G1268700.v1.1
prunus_persica	Prupe.1G346600_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.5G236300_v2.0.a1
pyrus_communis	pycom09g18170 pycom14g19980 pycom17g26730
rosa_chinensis	RchiOBHm_Chr3g0491191 RchiOBHm_Chr4g0446601 RchiOBHm_Chr7g0178021
rosa_laevigata	RLG00000005481 RLG00000005647 RLG00000022854
rosa_multiflora	Rmu_sc0014162.1_g000003 Rmu_sc0015729.1_g000003 Rmu_sc0019011.1_g000005 Rmu_ssc0000144.1_g000004
rosa_roxburghii	Rroxscaffold_3G00275280 Rroxscaffold_5G00386990 Rroxscaffold_6G00393090
rosa_rugosa	Rorug03G0247600 Rorug04G0372700 Rorug06G0412400 Rorug06G0412400
rosa_samantha	Rh3BG333800 Rh3DG331200 Rh4AG434300 Rh4BG443500 Rh4CG460800 Rh4DG442300 Rh7AG011900 Rh7BG011300 Rh7CG011900 Rh7DG011900
rosa_wichuraiana	Rw3G026210 Rw3G026250 Rw4G037130 Rw7G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	2 cut(s)	125, 348
AcsI	RAATTY	2 cut(s)	163, 388
AcvI	CACGTG	1 cut(s)	21
AfaI	GTAC	3 cut(s)	187, 194, 374
AfiI	CCNNNNNNNGG	1 cut(s)	206
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	34, 161
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	4 cut(s)	48, 272, 294, 325
AluI	AGCT	4 cut(s)	48, 272, 294, 325
AlwI	GGATC	2 cut(s)	125, 348
ApeKI	GCWGC	2 cut(s)	25, 59
ApoI	RAATTY	2 cut(s)	163, 388
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	197
AxyI	CCTNAGG	1 cut(s)	147
BauI	CACGAG	1 cut(s)	78
BbrPI	CACGTG	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	37, 46
BciT130I	CCWGG	1 cut(s)	363
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	112
BisI	GCNGC	2 cut(s)	26, 60
BlsI	GCNGC	2 cut(s)	27, 61
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	197
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	2 cut(s)	46, 328
BsaAI	YACGTR	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	200
Bse21I	CCTNAGG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	37, 46
Bsh1285I	CGRYCG	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	12
BsiWI	CGTACG	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	206
Bsp143I	GATC	3 cut(s)	117, 125, 353
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	139
BspPI	GGATC	2 cut(s)	125, 348
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	3 cut(s)	117, 125, 353
BssSI	CACGAG	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstBAI	YACGTR	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	147
BstDSI	CCRYGG	1 cut(s)	63
BstKTI	GATC	3 cut(s)	120, 128, 356
BstMBI	GATC	3 cut(s)	117, 125, 353
BstMCI	CGRYCG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 236
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	2 cut(s)	37, 46
BstX2I	RGATCY	2 cut(s)	117, 353
BstYI	RGATCY	2 cut(s)	117, 353
Bsu36I	CCTNAGG	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	63
BtsI	GCAGTG	2 cut(s)	253, 314
BtsIMutI	CAGTG	2 cut(s)	253, 314
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	3 cut(s)	186, 193, 373
CviAII	CATG	2 cut(s)	64, 174
CviJI	RGCY	5 cut(s)	42, 48, 272, 294, 325
CviKI_1	RGCY	5 cut(s)	42, 48, 272, 294, 325
CviQI	GTAC	3 cut(s)	186, 193, 373
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	3 cut(s)	119, 127, 355
DpnII	GATC	3 cut(s)	117, 125, 353
DraI	TTTAAA	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	63
Eco32I	GATATC	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	197
Eco72I	CACGTG	1 cut(s)	21
Eco81I	CCTNAGG	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	361
EcoRV	GATATC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	2 cut(s)	67, 177
FatI	CATG	2 cut(s)	63, 173
Fnu4HI	GCNGC	2 cut(s)	26, 60
Fsp4HI	GCNGC	2 cut(s)	26, 60
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	2 cut(s)	26, 60
HapII	CCGG	1 cut(s)	12
Hin1II	CATG	2 cut(s)	67, 177
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	377
Hpy188III	TCNNGA	1 cut(s)	146
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	2 cut(s)	20, 188
HpyCH4V	TGCA	4 cut(s)	173, 230, 246, 319
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 236
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	2 cut(s)	20, 188
Hsp92II	CATG	2 cut(s)	67, 177
Kzo9I	GATC	3 cut(s)	117, 125, 353
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	6 cut(s)	25, 159, 213, 293, 348, 375
Lsp1109I	GCAGC	2 cut(s)	37, 46
LweI	GCATC	2 cut(s)	46, 328
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	2 cut(s)	20, 188
MaeIII	GTNAC	2 cut(s)	107, 176
MalI	GATC	3 cut(s)	119, 127, 355
MboI	GATC	3 cut(s)	117, 125, 353
MboII	GAAGA	2 cut(s)	81, 333
MflI	RGATCY	2 cut(s)	117, 353
MluCI	AATT	4 cut(s)	72, 163, 337, 388
MnlI	CCTC	2 cut(s)	74, 142
MseI	TTAA	3 cut(s)	327, 336, 392
MslI	CAYNNNNRTG	1 cut(s)	172
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	2 cut(s)	59, 236
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	3 cut(s)	117, 125, 353
NlaIII	CATG	2 cut(s)	67, 177
NspI	RCATGY	1 cut(s)	177
Pfl23II	CGTACG	1 cut(s)	192
PkrI	GCNGC	2 cut(s)	27, 61
Ple19I	CGATCG	1 cut(s)	128
PmaCI	CACGTG	1 cut(s)	21
PmlI	CACGTG	1 cut(s)	21
Ppu21I	YACGTR	1 cut(s)	21
PsiI	TTATAA	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	361
PspCI	CACGTG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	361
PspLI	CGTACG	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	117, 353
PvuI	CGATCG	1 cut(s)	128
RsaI	GTAC	3 cut(s)	187, 194, 374
RsaNI	GTAC	3 cut(s)	186, 193, 373
RseI	CAYNNNNRTG	1 cut(s)	172
SaqAI	TTAA	3 cut(s)	327, 336, 392
SatI	GCNGC	2 cut(s)	26, 60
Sau3AI	GATC	3 cut(s)	117, 125, 353
Sau96I	GGNCC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	363
SfaNI	GCATC	2 cut(s)	46, 328
SfcI	CTRYAG	1 cut(s)	112
SinI	GGWCC	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	172
Sse9I	AATT	4 cut(s)	72, 163, 337, 388
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	2 cut(s)	23, 191
TaqI	TCGA	2 cut(s)	124, 128
TasI	AATT	4 cut(s)	72, 163, 337, 388
TatI	WGTACW	1 cut(s)	372
Tru1I	TTAA	3 cut(s)	327, 336, 392
Tru9I	TTAA	3 cut(s)	327, 336, 392
TscAI	CASTG	2 cut(s)	253, 321
TseI	GCWGC	2 cut(s)	25, 59
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	2 cut(s)	253, 321
VpaK11BI	GGWCC	1 cut(s)	197
XapI	RAATTY	2 cut(s)	163, 388
XceI	RCATGY	1 cut(s)	177
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.