FvH4_4g36850

glutamine synthetase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
33581939 .. 33584901
2963 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36850.t1

Sequence Viewer

Length: 1071 bp
ATGACGTCGTCTCTCCTCTCTGATCTGATGAACCTCAACCTCTCGGAATCCGGCGAGAAGATCATCGCCGAATACATATGGGTCGGTGGTTCTGGTTTGGACGTGAGAAGCAAAGCAAGGACTCTGCCTGGGCCTGTGTCAGACCCATCAAAGCTACCCAAGTGGAACTACGACGGTTCGAGCACAAAACAAGCTCCAGGGAAGGACAGTGAAGTTGTGTTGTATCCCCAGGCTATTTTCAAGGACCCGTTCAGAAGAGGGAACAATATCCTGGTGATATGCGATTGCTATACACCAGCTGGAGAGCCGATCCCTACCAATAGAAGGGCTGCTGCTGCCAAGATATTCAATAACCCTGCTGTTGCCGCCGAAGAGCCTTGGTATGGAATTGAGCAAGAGTACACTTTTCTTCAGAAGGATATAAACTGGCCCCTCGGATGGCCCGTTGGTGGCTTCCCTGCTCCACAGGGGCCATACTACTGTAGTGCTGGAGCAGACAAGGCCTTTGGGCGTGATATAGTCGATGCTCACTACAAGGCATGCATCTATGCTGGAATCAATATCAGTGGCATCAATGCTGAGGTTATGCCAGGCCAGTGGGAATTTCAAGTTGGTCCTTGTGTCGGTATTACTGCCGGTGATCAAATATGGGCTGCTCGATACATCCTTGAGAGAATCACAGAAATGGCAGGAGTTGTTCTTTCCTTGGATCCTAAACCAGTCAAGGGTGAGTGGAATGGAGCTGGTGCTCACTGTAACTACAGTACCAAGTCGATGAGAAATGACGGTGGGTATGAGATAATCAAGAAGGCAATCGAAAAACTGAAACTGCGGCACAAGGAGCACATTGCTGCTTATGGAGAAGGCAACGAGAGGAGACTGACCGGTCGATGTGAGACTGCTGACATTCACACTTTCTCCTGGGGAGTAGCAAACAGGGGAGCCTCCGTTCGTGTTGGTCGTGATACTGAGAAAGAAGGCAAAGGGTATTTTGAGGACAGAAGACCAGCATCAAACATGGATCCCTATCTTGTGACATCTATGATTGCGGAGACCACCATTCTTGGCTAG

Protein Analysis

357

Amino Acids

39.05

Weight (kDa)

6.27

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gln-synt_N PF03951 56 - 99 2e-08 Glutamine synthetase, beta-Grasp domain
Gln-synt_C PF00120 153 - 256 4.9e-10 Glutamine synthetase, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 885
AatII GACGTC 1 cut(s) 8
AciI CCGC 3 cut(s) 366, 832, 1049
AclWI GGATC 5 cut(s) 304, 704, 717, 1016, 1029
AcsI RAATTY 1 cut(s) 602
AcuI CTGAAG 1 cut(s) 395
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 401, 766
AfiI CCNNNNNNNGG 6 cut(s) 324, 383, 438, 449, 623, 725
AgeI ACCGGT 1 cut(s) 884
AgsI TTSAA 3 cut(s) 241, 349, 608
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 6 cut(s) 127, 196, 228, 270, 589, 920
AjuI GAANNNNNNNTTGG 2 cut(s) 594, 626
AloI GAACNNNNNNTCC 2 cut(s) 933, 965
AluBI AGCT 4 cut(s) 154, 194, 299, 743
AluI AGCT 4 cut(s) 154, 194, 299, 743
Alw21I GWGCWC 3 cut(s) 185, 751, 846
Alw26I GTCTC 4 cut(s) 15, 871, 890, 1046
AlwI GGATC 5 cut(s) 304, 704, 717, 1016, 1029
AoxI GGCC 6 cut(s) 131, 428, 440, 470, 501, 592
ApeKI GCWGC 5 cut(s) 329, 332, 335, 653, 851
ApoI RAATTY 1 cut(s) 602
ArsI GACNNNNNNTTYG 2 cut(s) 488, 520
AsiGI ACCGGT 1 cut(s) 884
AspS9I GGNCC 6 cut(s) 131, 244, 429, 441, 470, 614
AsuHPI GGTGA 3 cut(s) 286, 650, 740
AvaII GGWCC 2 cut(s) 244, 614
BaeI ACNNNNGTAYC 2 cut(s) 748, 781
BamHI GGATCC 2 cut(s) 709, 1021
BbsI GAAGAC 1 cut(s) 1009
Bbv12I GWGCWC 3 cut(s) 185, 751, 846
BbvCI CCTCAGC 1 cut(s) 579
BbvI GCAGC 5 cut(s) 316, 319, 322, 640, 838
BccI CCATC 2 cut(s) 154, 432
BciT130I CCWGG 6 cut(s) 129, 198, 230, 272, 591, 922
BciVI GTATCC 1 cut(s) 234
BclI TGATCA 1 cut(s) 640
BcoDI GTCTC 4 cut(s) 15, 871, 890, 1046
BfaI CTAG 1 cut(s) 1069
BfmI CTRYAG 2 cut(s) 481, 760
BfuI GTATCC 1 cut(s) 234
BisI GCNGC 7 cut(s) 330, 333, 336, 366, 654, 833, 852
BlsI GCNGC 7 cut(s) 331, 334, 337, 367, 655, 834, 853
Bme1390I CCNGG 6 cut(s) 129, 198, 230, 272, 591, 922
Bme18I GGWCC 2 cut(s) 244, 614
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 6 cut(s) 131, 244, 429, 441, 470, 614
BmiI GGNNCC 6 cut(s) 246, 431, 471, 711, 943, 1023
BmrFI CCNGG 6 cut(s) 129, 198, 230, 272, 591, 922
BmsI GCATC 4 cut(s) 514, 552, 579, 1019
BpiI GAAGAC 1 cut(s) 1009
BpmI CTGGAG 3 cut(s) 180, 321, 510
Bpu10I CCTNAGC 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 689
BsaBI GATNNNNATC 1 cut(s) 1026
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 1046
BsaJI CCNNGG 7 cut(s) 128, 197, 228, 377, 433, 705, 921
BsaWI WCCGGW 1 cut(s) 884
BsaXI ACNNNNNCTCC 4 cut(s) 902, 932, 933, 963
Bsc4I CCNNNNNNNGG 6 cut(s) 324, 383, 438, 449, 623, 725
Bse118I RCCGGY 2 cut(s) 635, 884
Bse1I ACTGG 3 cut(s) 431, 595, 719
Bse3DI GCAATG 1 cut(s) 846
Bse8I GATNNNNATC 1 cut(s) 1026
BseBI CCWGG 6 cut(s) 129, 198, 230, 272, 591, 922
BseDI CCNNGG 7 cut(s) 128, 197, 228, 377, 433, 705, 921
BseGI GGATG 2 cut(s) 443, 663
BseJI GATNNNNATC 1 cut(s) 1026
BseLI CCNNNNNNNGG 6 cut(s) 324, 383, 438, 449, 623, 725
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 2 cut(s) 570, 960
BseNI ACTGG 3 cut(s) 431, 595, 719
BseRI GAGGAG 2 cut(s) 5, 889
BseXI GCAGC 5 cut(s) 316, 319, 322, 640, 838
Bsh1285I CGRYCG 1 cut(s) 889
BshFI GGCC 6 cut(s) 133, 430, 442, 472, 503, 594
BshTI ACCGGT 1 cut(s) 884
BsiEI CGRYCG 1 cut(s) 889
BsiHKAI GWGCWC 3 cut(s) 185, 751, 846
BsiSI CCGG 3 cut(s) 51, 636, 885
BslI CCNNNNNNNGG 6 cut(s) 324, 383, 438, 449, 623, 725
BsmAI GTCTC 4 cut(s) 15, 871, 890, 1046
BsmBI CGTCTC 1 cut(s) 15
BsnI GGCC 6 cut(s) 133, 430, 442, 472, 503, 594
Bso31I GGTCTC 1 cut(s) 1046
Bsp1286I GDGCHC 3 cut(s) 185, 751, 846
Bsp143I GATC 6 cut(s) 22, 60, 309, 640, 709, 1021
BspACI CCGC 3 cut(s) 366, 832, 1049
BspANI GGCC 6 cut(s) 133, 430, 442, 472, 503, 594
BspCNI CTCAG 2 cut(s) 571, 961
BspLI GGNNCC 6 cut(s) 246, 431, 471, 711, 943, 1023
BspPI GGATC 5 cut(s) 304, 704, 717, 1016, 1029
BspQI GCTCTTC 1 cut(s) 366
BspTNI GGTCTC 1 cut(s) 1046
BsrDI GCAATG 1 cut(s) 846
BsrFI RCCGGY 2 cut(s) 635, 884
BsrI ACTGG 3 cut(s) 431, 595, 719
BssAI RCCGGY 2 cut(s) 635, 884
BssECI CCNNGG 7 cut(s) 128, 197, 228, 377, 433, 705, 921
BssMI GATC 6 cut(s) 22, 60, 309, 640, 709, 1021
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 377, 705
Bst2UI CCWGG 6 cut(s) 129, 198, 230, 272, 591, 922
Bst4CI ACNGT 6 cut(s) 176, 209, 482, 755, 764, 788
Bst6I CTCTTC 2 cut(s) 250, 366
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 541
BstDEI CTNAG 2 cut(s) 579, 969
BstF5I GGATG 2 cut(s) 443, 663
BstKTI GATC 6 cut(s) 25, 63, 312, 643, 712, 1024
BstMAI GTCTC 4 cut(s) 15, 871, 890, 1046
BstMBI GATC 6 cut(s) 22, 60, 309, 640, 709, 1021
BstMCI CGRYCG 1 cut(s) 889
BstMWI GCNNNNNNNGC 4 cut(s) 335, 365, 500, 841
BstNI CCWGG 6 cut(s) 129, 198, 230, 272, 591, 922
BstNSI RCATGY 1 cut(s) 543
BstSCI CCNGG 6 cut(s) 127, 196, 228, 270, 589, 920
BstSFI CTRYAG 2 cut(s) 481, 760
BstV1I GCAGC 5 cut(s) 316, 319, 322, 640, 838
BstV2I GAAGAC 1 cut(s) 1009
BstX2I RGATCY 2 cut(s) 709, 1021
BstXI CCANNNNNNTGG 1 cut(s) 597
BstYI RGATCY 2 cut(s) 709, 1021
BsuI GTATCC 1 cut(s) 234
BsuRI GGCC 6 cut(s) 133, 430, 442, 472, 503, 594
BtgZI GCGATG 1 cut(s) 49
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 2 cut(s) 443, 663
BtsIMutI CAGTG 4 cut(s) 214, 571, 602, 751
Cac8I GCNNGC 1 cut(s) 541
Cfr10I RCCGGY 2 cut(s) 635, 884
Cfr13I GGNCC 6 cut(s) 131, 244, 429, 441, 470, 614
Csp6I GTAC 2 cut(s) 400, 765
CspAI ACCGGT 1 cut(s) 884
CspCI CAANNNNNGTGG 3 cut(s) 547, 582, 1045
CviAII CATG 2 cut(s) 540, 1018
CviQI GTAC 2 cut(s) 400, 765
DdeI CTNAG 2 cut(s) 579, 969
DpnI GATC 6 cut(s) 24, 62, 311, 642, 711, 1023
DpnII GATC 6 cut(s) 22, 60, 309, 640, 709, 1021
DrdI GACNNNNNNGTC 1 cut(s) 885
DseDI GACNNNNNNGTC 1 cut(s) 885
Eam1104I CTCTTC 2 cut(s) 250, 366
EarI CTCTTC 2 cut(s) 250, 366
Eco130I CCWWGG 2 cut(s) 377, 705
Eco147I AGGCCT 1 cut(s) 503
Eco31I GGTCTC 1 cut(s) 1046
Eco47I GGWCC 2 cut(s) 244, 614
Eco57I CTGAAG 1 cut(s) 395
EcoO109I RGGNCCY 1 cut(s) 244
EcoRII CCWGG 6 cut(s) 127, 196, 228, 270, 589, 920
EcoT14I CCWWGG 2 cut(s) 377, 705
EcoT22I ATGCAT 1 cut(s) 545
ErhI CCWWGG 2 cut(s) 377, 705
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 2 cut(s) 543, 1021
FatI CATG 2 cut(s) 539, 1017
FauNDI CATATG 1 cut(s) 77
FbaI TGATCA 1 cut(s) 640
Fnu4HI GCNGC 7 cut(s) 330, 333, 336, 366, 654, 833, 852
FokI GGATG 2 cut(s) 450, 650
Fsp4HI GCNGC 7 cut(s) 330, 333, 336, 366, 654, 833, 852
FspBI CTAG 1 cut(s) 1069
GluI GCNGC 7 cut(s) 330, 333, 336, 366, 654, 833, 852
GsuI CTGGAG 3 cut(s) 180, 321, 510
HaeIII GGCC 6 cut(s) 133, 430, 442, 472, 503, 594
HapII CCGG 3 cut(s) 51, 636, 885
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 543, 1021
HinfI GANTC 4 cut(s) 47, 121, 555, 675
HpaII CCGG 3 cut(s) 51, 636, 885
HphI GGTGA 3 cut(s) 286, 650, 740
Hpy166II GTNNAC 1 cut(s) 402
Hpy188I TCNGA 7 cut(s) 22, 27, 46, 142, 254, 414, 437
Hpy188III TCNNGA 2 cut(s) 805, 962
Hpy8I GTNNAC 1 cut(s) 402
Hpy99I CGWCG 2 cut(s) 10, 176
HpyAV CCTTC 6 cut(s) 196, 318, 409, 802, 857, 971
HpyCH4III ACNGT 6 cut(s) 176, 209, 482, 755, 764, 788
HpyCH4IV ACGT 2 cut(s) 5, 102
HpyCH4V TGCA 1 cut(s) 543
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 365, 500, 841
HpyF3I CTNAG 2 cut(s) 579, 969
HpySE526I ACGT 2 cut(s) 5, 102
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 543, 1021
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 6 cut(s) 22, 60, 309, 640, 709, 1021
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 6 cut(s) 199, 466, 491, 740, 841, 941
Lsp1109I GCAGC 5 cut(s) 316, 319, 322, 640, 838
LweI GCATC 4 cut(s) 514, 552, 579, 1019
MaeI CTAG 1 cut(s) 1069
MaeII ACGT 2 cut(s) 5, 102
MaeIII GTNAC 2 cut(s) 755, 1033
MalI GATC 6 cut(s) 24, 62, 311, 642, 711, 1023
MboI GATC 6 cut(s) 22, 60, 309, 640, 709, 1021
MboII GAAGA 5 cut(s) 70, 267, 383, 401, 1014
MflI RGATCY 2 cut(s) 709, 1021
MhlI GDGCHC 3 cut(s) 185, 751, 846
MluCI AATT 2 cut(s) 387, 602
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 9 cut(s) 26, 44, 50, 251, 443, 574, 867, 955, 988
Mph1103I ATGCAT 1 cut(s) 545
MslI CAYNNNNRTG 1 cut(s) 683
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 3 cut(s) 51, 636, 885
MspR9I CCNGG 6 cut(s) 129, 198, 230, 272, 591, 922
MvaI CCWGG 6 cut(s) 129, 198, 230, 272, 591, 922
MwoI GCNNNNNNNGC 4 cut(s) 335, 365, 500, 841
NdeI CATATG 1 cut(s) 77
NdeII GATC 6 cut(s) 22, 60, 309, 640, 709, 1021
NlaIII CATG 2 cut(s) 543, 1021
NlaIV GGNNCC 6 cut(s) 246, 431, 471, 711, 943, 1023
NmuCI GTSAC 1 cut(s) 1033
NsiI ATGCAT 1 cut(s) 545
NspI RCATGY 1 cut(s) 543
PaeI GCATGC 1 cut(s) 543
PceI AGGCCT 1 cut(s) 503
PciSI GCTCTTC 1 cut(s) 366
PcsI WCGNNNNNNNCGW 2 cut(s) 441, 958
PfeI GAWTC 3 cut(s) 47, 555, 675
PflFI GACNNNGTC 1 cut(s) 7
PinAI ACCGGT 1 cut(s) 884
PkrI GCNGC 7 cut(s) 331, 334, 337, 367, 655, 834, 853
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 6 cut(s) 127, 196, 228, 270, 589, 920
PspGI CCWGG 6 cut(s) 127, 196, 228, 270, 589, 920
PspN4I GGNNCC 6 cut(s) 246, 431, 471, 711, 943, 1023
PspPI GGNCC 6 cut(s) 131, 244, 429, 441, 470, 614
PspPPI RGGWCCY 1 cut(s) 244
PsuI RGATCY 2 cut(s) 709, 1021
PsyI GACNNNGTC 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 2 cut(s) 401, 766
RsaNI GTAC 2 cut(s) 400, 765
RseI CAYNNNNRTG 1 cut(s) 683
SapI GCTCTTC 1 cut(s) 366
SatI GCNGC 7 cut(s) 330, 333, 336, 366, 654, 833, 852
Sau3AI GATC 6 cut(s) 22, 60, 309, 640, 709, 1021
Sau96I GGNCC 6 cut(s) 131, 244, 429, 441, 470, 614
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 6 cut(s) 129, 198, 230, 272, 591, 922
SduI GDGCHC 3 cut(s) 185, 751, 846
SetI ASST 9 cut(s) 8, 36, 42, 105, 156, 196, 301, 585, 745
SfaNI GCATC 4 cut(s) 514, 552, 579, 1019
SfcI CTRYAG 2 cut(s) 481, 760
SinI GGWCC 2 cut(s) 244, 614
SmiMI CAYNNNNRTG 1 cut(s) 683
SmlI CTYRAG 1 cut(s) 668
SmoI CTYRAG 1 cut(s) 668
SphI GCATGC 1 cut(s) 543
Sse9I AATT 2 cut(s) 387, 602
SseBI AGGCCT 1 cut(s) 503
SsiI CCGC 3 cut(s) 366, 832, 1049
SspMI CTAG 1 cut(s) 1069
StuI AGGCCT 1 cut(s) 503
StyD4I CCNGG 6 cut(s) 127, 196, 228, 270, 589, 920
StyI CCWWGG 2 cut(s) 377, 705
TaaI ACNGT 6 cut(s) 176, 209, 482, 755, 764, 788
TaiI ACGT 2 cut(s) 8, 105
TaqI TCGA 6 cut(s) 179, 522, 658, 773, 816, 889
TasI AATT 2 cut(s) 387, 602
TatI WGTACW 1 cut(s) 399
TauI GCSGC 2 cut(s) 368, 835
TfiI GAWTC 3 cut(s) 47, 555, 675
TscAI CASTG 4 cut(s) 214, 571, 602, 758
TseFI GTSAC 1 cut(s) 1033
TseI GCWGC 5 cut(s) 329, 332, 335, 653, 851
Tsp45I GTSAC 1 cut(s) 1033
TspDTI ATGAA 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 937
TspRI CASTG 4 cut(s) 214, 571, 602, 758
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 2 cut(s) 244, 614
XapI RAATTY 1 cut(s) 602
XceI RCATGY 1 cut(s) 543
XspI CTAG 1 cut(s) 1069
ZraI GACGTC 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.