RchiOBHm_Chr3g0491191

glutamine synthetase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
37968400 .. 37971375
2976 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45420

Sequence Viewer

Length: 1071 bp
ATGTCGCTGCTCTCAGATCTCATCAACCTTGACCTCACAGACACCACTGAGAAGATCATCGCCGAGTACATATGGGTTGGTGGATCTGGTATGGATCTCAGAAGCAAAGCAAAGACTCTGCCAGGACCTGTTACTGACCCTGCAAAACTTCCCAAGTGGAACTATGATGGATCGAGCACAGGTCAAGCTCCAGGGCAAGACAGTGAAGTCATCCTATACCCTCAAGCCATTTTCAAGGACCCATTTAGGAGAGGCAACAATATCTTGGTTATGTGTGATACTTATACTCCGGCGGGAGAACCAATTCCAACAAACAAGAGATGTACTGCAGCAAAGATATTCAGCCATCCTGATGTTGCTGCTGAAGAGCCCTGGTATGGTCTGGAGCAGGAGTACACCTTGTTGCAGAAAGATGTCAACTGGCCGTTGGGATGGCCAATTGGTGGTTTTCCTGGTCCTCAGGGACCGTACTACTGTGCTGCCGGCGCTGACAAAGCATTTGGGCGTGACATTGTTGATTCTCATTACAAGGCCTGCTTGTATGCAGGCATCAACATCAGTGGCATCAACGGTGAAGTCATGCCAGGCCAGTGGGAGTTTCAAGTTGGTCCTTCAGTTGGCATATCTGCGGGTGATGAATTATGGGTTGCTCGTTATATTTTGGAGAGGATCACAGAGATTGCTGGAGTGGTTCTTTCGTTTGATCCCAAGCCAATCCCTGGTGATTGGAACGGAGCTGGGGCTCACACAAATTACAGTACCAAATCCATGAGACACCAAGGAGGCTATGAAATCATCAAGAAAGCAATTGAGAAGCTGGGACTAAGGCACAAAGAACACATTGCTGCATATGGAGAAGGCAATGAACGCCGATTGACTGGAAAACATGAAACAGCTAACATTGACACCTTCAAATGGGGTGTTGCAGACCGTGGTGCCTCCATCCGCGTTGGTCGTGACACAGAGAAAGAAGGCAAGGGCTATTTTGAGGACAGGAGGCCTGCTTCGAACATGGATCCATATGTGGTGACTTCTATGATCGCCGAGACCACTATTCTGTGGAAGCCATAA

Protein Analysis

356

Amino Acids

39.2

Weight (kDa)

5.6

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gln-synt_N PF03951 52 - 97 1.7e-08 Glutamine synthetase, beta-Grasp domain
Gln-synt_C PF00120 125 - 254 1.8e-10 Glutamine synthetase, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 935
AccB7I CCANNNNNTGG 2 cut(s) 443, 719
AccII CGCG 1 cut(s) 948
AciI CCGC 3 cut(s) 293, 629, 946
AclWI GGATC 7 cut(s) 91, 102, 178, 677, 698, 1010, 1023
AcoI YGGCCR 2 cut(s) 422, 434
AcuI CTGAAG 2 cut(s) 384, 597
AfaI GTAC 5 cut(s) 68, 325, 395, 470, 760
AfiI CCNNNNNNNGG 5 cut(s) 377, 443, 617, 719, 915
AgsI TTSAA 3 cut(s) 235, 602, 913
AjnI CCWGG 6 cut(s) 121, 190, 371, 451, 583, 718
AluBI AGCT 4 cut(s) 188, 737, 817, 896
AluI AGCT 4 cut(s) 188, 737, 817, 896
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 2 cut(s) 766, 1040
AlwI GGATC 7 cut(s) 91, 102, 178, 677, 698, 1010, 1023
AlwNI CAGNNNCTG 1 cut(s) 128
AoxI GGCC 5 cut(s) 422, 434, 531, 586, 998
ApeKI GCWGC 5 cut(s) 7, 329, 359, 479, 845
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
Asp700I GAANNNNTTC 1 cut(s) 303
AspLEI GCGC 1 cut(s) 488
AspS9I GGNCC 5 cut(s) 125, 238, 455, 464, 608
AsuHPI GGTGA 4 cut(s) 584, 644, 734, 1039
AsuII TTCGAA 1 cut(s) 1007
AvaII GGWCC 5 cut(s) 125, 238, 455, 464, 608
AxyI CCTNAGG 1 cut(s) 459
BalI TGGCCA 1 cut(s) 436
BamHI GGATCC 1 cut(s) 1015
BanI GGYRCC 1 cut(s) 935
BanII GRGCYC 2 cut(s) 372, 745
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 4 cut(s) 341, 346, 466, 832
BccI CCATC 4 cut(s) 161, 354, 426, 950
BceAI ACGGC 1 cut(s) 409
BciT130I CCWGG 6 cut(s) 123, 192, 373, 453, 585, 720
BcoDI GTCTC 2 cut(s) 766, 1040
BfmI CTRYAG 1 cut(s) 327
BfoI RGCGCY 1 cut(s) 489
BglII AGATCT 1 cut(s) 16
BisI GCNGC 5 cut(s) 8, 330, 360, 480, 846
BlsI GCNGC 5 cut(s) 9, 331, 361, 481, 847
Bme1390I CCNGG 6 cut(s) 123, 192, 373, 453, 585, 720
Bme18I GGWCC 5 cut(s) 125, 238, 455, 464, 608
BmgT120I GGNCC 5 cut(s) 125, 238, 455, 464, 608
BmiI GGNNCC 4 cut(s) 240, 465, 937, 1017
BmrFI CCNGG 6 cut(s) 123, 192, 373, 453, 585, 720
BmsI GCATC 2 cut(s) 558, 573
BpmI CTGGAG 3 cut(s) 174, 404, 705
Bpu14I TTCGAA 1 cut(s) 1007
BpuEI CTTGAG 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 1040
BsaJI CCNNGG 5 cut(s) 191, 371, 718, 778, 931
BsaXI ACNNNNNCTCC 4 cut(s) 271, 301, 377, 407
Bsc4I CCNNNNNNNGG 5 cut(s) 377, 443, 617, 719, 915
Bse118I RCCGGY 1 cut(s) 482
Bse1I ACTGG 3 cut(s) 425, 589, 883
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 2 cut(s) 840, 868
BseBI CCWGG 6 cut(s) 123, 192, 373, 453, 585, 720
BseDI CCNNGG 5 cut(s) 191, 371, 718, 778, 931
BseGI GGATG 4 cut(s) 210, 346, 437, 942
BseLI CCNNNNNNNGG 5 cut(s) 377, 443, 617, 719, 915
BseMI GCAATG 2 cut(s) 840, 868
BseMII CTCAG 4 cut(s) 27, 39, 112, 473
BseNI ACTGG 3 cut(s) 425, 589, 883
BseXI GCAGC 4 cut(s) 341, 346, 466, 832
BseYI CCCAGC 2 cut(s) 737, 817
Bsh1236I CGCG 1 cut(s) 948
BshFI GGCC 5 cut(s) 424, 436, 533, 588, 1000
BshNI GGYRCC 1 cut(s) 935
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 2 cut(s) 290, 483
BslFI GGGAC 2 cut(s) 477, 834
BslI CCNNNNNNNGG 5 cut(s) 377, 443, 617, 719, 915
BsmAI GTCTC 2 cut(s) 766, 1040
BsmFI GGGAC 2 cut(s) 477, 834
BsnI GGCC 5 cut(s) 424, 436, 533, 588, 1000
Bso31I GGTCTC 1 cut(s) 1040
Bsp119I TTCGAA 1 cut(s) 1007
Bsp1286I GDGCHC 3 cut(s) 179, 372, 745
Bsp143I GATC 9 cut(s) 16, 54, 83, 94, 170, 669, 703, 1015, 1038
BspACI CCGC 3 cut(s) 293, 629, 946
BspANI GGCC 5 cut(s) 424, 436, 533, 588, 1000
BspCNI CTCAG 4 cut(s) 26, 40, 111, 472
BspFNI CGCG 1 cut(s) 948
BspLI GGNNCC 4 cut(s) 240, 465, 937, 1017
BspMAI CTGCAG 1 cut(s) 331
BspPI GGATC 7 cut(s) 91, 102, 178, 677, 698, 1010, 1023
BspQI GCTCTTC 1 cut(s) 360
BspT104I TTCGAA 1 cut(s) 1007
BspT107I GGYRCC 1 cut(s) 935
BspTNI GGTCTC 1 cut(s) 1040
BsrDI GCAATG 2 cut(s) 840, 868
BsrFI RCCGGY 1 cut(s) 482
BsrI ACTGG 3 cut(s) 425, 589, 883
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 5 cut(s) 191, 371, 718, 778, 931
BssMI GATC 9 cut(s) 16, 54, 83, 94, 170, 669, 703, 1015, 1038
BssT1I CCWWGG 1 cut(s) 778
Bst2UI CCWGG 6 cut(s) 123, 192, 373, 453, 585, 720
Bst4CI ACNGT 6 cut(s) 203, 468, 476, 572, 758, 932
Bst6I CTCTTC 1 cut(s) 360
BstBI TTCGAA 1 cut(s) 1007
BstC8I GCNNGC 4 cut(s) 484, 535, 547, 1002
BstDEI CTNAG 5 cut(s) 13, 48, 98, 459, 824
BstDSI CCRYGG 1 cut(s) 931
BstF5I GGATG 4 cut(s) 210, 346, 437, 942
BstFNI CGCG 1 cut(s) 948
BstH2I RGCGCY 1 cut(s) 489
BstHHI GCGC 1 cut(s) 488
BstKTI GATC 9 cut(s) 19, 57, 86, 97, 173, 672, 706, 1018, 1041
BstMAI GTCTC 2 cut(s) 766, 1040
BstMBI GATC 9 cut(s) 16, 54, 83, 94, 170, 669, 703, 1015, 1038
BstMWI GCNNNNNNNGC 3 cut(s) 485, 494, 867
BstNI CCWGG 6 cut(s) 123, 192, 373, 453, 585, 720
BstSCI CCNGG 6 cut(s) 121, 190, 371, 451, 583, 718
BstSFI CTRYAG 1 cut(s) 327
BstUI CGCG 1 cut(s) 948
BstV1I GCAGC 4 cut(s) 341, 346, 466, 832
BstX2I RGATCY 4 cut(s) 16, 83, 94, 1015
BstXI CCANNNNNNTGG 1 cut(s) 591
BstYI RGATCY 4 cut(s) 16, 83, 94, 1015
Bsu36I CCTNAGG 1 cut(s) 459
BsuRI GGCC 5 cut(s) 424, 436, 533, 588, 1000
BtgI CCRYGG 1 cut(s) 931
BtgZI GCGATG 1 cut(s) 43
BtsCI GGATG 4 cut(s) 210, 346, 437, 942
BtsIMutI CAGTG 4 cut(s) 45, 208, 565, 596
Cac8I GCNNGC 4 cut(s) 484, 535, 547, 1002
CaiI CAGNNNCTG 1 cut(s) 128
CfoI GCGC 1 cut(s) 488
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 5 cut(s) 125, 238, 455, 464, 608
Csp6I GTAC 5 cut(s) 67, 324, 394, 469, 759
CspCI CAANNNNNGTGG 2 cut(s) 541, 576
CviAII CATG 4 cut(s) 580, 769, 887, 1012
CviQI GTAC 5 cut(s) 67, 324, 394, 469, 759
DdeI CTNAG 5 cut(s) 13, 48, 98, 459, 824
DpnI GATC 9 cut(s) 18, 56, 85, 96, 172, 671, 705, 1017, 1040
DpnII GATC 9 cut(s) 16, 54, 83, 94, 170, 669, 703, 1015, 1038
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
EaeI YGGCCR 2 cut(s) 422, 434
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 778
Eco147I AGGCCT 2 cut(s) 533, 1000
Eco24I GRGCYC 2 cut(s) 372, 745
Eco31I GGTCTC 1 cut(s) 1040
Eco47I GGWCC 5 cut(s) 125, 238, 455, 464, 608
Eco57I CTGAAG 2 cut(s) 384, 597
Eco81I CCTNAGG 1 cut(s) 459
EcoO109I RGGNCCY 2 cut(s) 125, 238
EcoRII CCWGG 6 cut(s) 121, 190, 371, 451, 583, 718
EcoT14I CCWWGG 1 cut(s) 778
EcoT38I GRGCYC 2 cut(s) 372, 745
ErhI CCWWGG 1 cut(s) 778
FaeI CATG 4 cut(s) 583, 772, 890, 1015
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FaqI GGGAC 2 cut(s) 477, 834
FatI CATG 4 cut(s) 579, 768, 886, 1011
FauI CCCGC 2 cut(s) 286, 622
FauNDI CATATG 3 cut(s) 71, 850, 1021
Fnu4HI GCNGC 5 cut(s) 8, 330, 360, 480, 846
FokI GGATG 4 cut(s) 197, 333, 444, 929
FriOI GRGCYC 2 cut(s) 372, 745
Fsp4HI GCNGC 5 cut(s) 8, 330, 360, 480, 846
GlaI GCGC 1 cut(s) 487
GluI GCNGC 5 cut(s) 8, 330, 360, 480, 846
GsaI CCCAGC 2 cut(s) 741, 821
GsuI CTGGAG 3 cut(s) 174, 404, 705
HaeII RGCGCY 1 cut(s) 489
HaeIII GGCC 5 cut(s) 424, 436, 533, 588, 1000
HapII CCGG 2 cut(s) 290, 483
HhaI GCGC 1 cut(s) 488
Hin1II CATG 4 cut(s) 583, 772, 890, 1015
Hin6I GCGC 1 cut(s) 486
HinP1I GCGC 1 cut(s) 486
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 2 cut(s) 115, 518
HpaII CCGG 2 cut(s) 290, 483
HphI GGTGA 4 cut(s) 584, 644, 734, 1039
Hpy166II GTNNAC 2 cut(s) 396, 418
Hpy188I TCNGA 2 cut(s) 16, 101
Hpy188III TCNNGA 4 cut(s) 350, 383, 799, 956
Hpy8I GTNNAC 2 cut(s) 396, 418
HpyAV CCTTC 4 cut(s) 621, 851, 919, 965
HpyCH4III ACNGT 6 cut(s) 203, 468, 476, 572, 758, 932
HpyCH4V TGCA 6 cut(s) 143, 329, 406, 545, 848, 926
HpyF10VI GCNNNNNNNGC 3 cut(s) 485, 494, 867
HpyF3I CTNAG 5 cut(s) 13, 48, 98, 459, 824
Hsp92II CATG 4 cut(s) 583, 772, 890, 1015
HspAI GCGC 1 cut(s) 486
KroI GCCGGC 1 cut(s) 482
KroNI GCCGGC 1 cut(s) 484
Kzo9I GATC 9 cut(s) 16, 54, 83, 94, 170, 669, 703, 1015, 1038
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 3 cut(s) 193, 385, 734
Lsp1109I GCAGC 4 cut(s) 341, 346, 466, 832
LweI GCATC 2 cut(s) 558, 573
MaeIII GTNAC 4 cut(s) 130, 506, 956, 1027
MalI GATC 9 cut(s) 18, 56, 85, 96, 172, 671, 705, 1017, 1040
MboI GATC 9 cut(s) 16, 54, 83, 94, 170, 669, 703, 1015, 1038
MboII GAAGA 2 cut(s) 64, 377
MfeI CAATTG 2 cut(s) 438, 807
MflI RGATCY 4 cut(s) 16, 83, 94, 1015
MhlI GDGCHC 3 cut(s) 179, 372, 745
MlsI TGGCCA 1 cut(s) 436
MluCI AATT 5 cut(s) 303, 438, 638, 751, 807
MluNI TGGCCA 1 cut(s) 436
MlyI GAGTC 1 cut(s) 109
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 9 cut(s) 44, 231, 245, 468, 660, 776, 949, 982, 990
Mox20I TGGCCA 1 cut(s) 436
MroNI GCCGGC 1 cut(s) 482
MroXI GAANNNNTTC 1 cut(s) 303
MscI TGGCCA 1 cut(s) 436
MslI CAYNNNNRTG 1 cut(s) 351
Msp20I TGGCCA 1 cut(s) 436
MspI CCGG 2 cut(s) 290, 483
MspR9I CCNGG 6 cut(s) 123, 192, 373, 453, 585, 720
MunI CAATTG 2 cut(s) 438, 807
MvaI CCWGG 6 cut(s) 123, 192, 373, 453, 585, 720
MvnI CGCG 1 cut(s) 948
MwoI GCNNNNNNNGC 3 cut(s) 485, 494, 867
NaeI GCCGGC 1 cut(s) 484
NdeI CATATG 3 cut(s) 71, 850, 1021
NdeII GATC 9 cut(s) 16, 54, 83, 94, 170, 669, 703, 1015, 1038
NgoMIV GCCGGC 1 cut(s) 482
NlaIII CATG 4 cut(s) 583, 772, 890, 1015
NlaIV GGNNCC 4 cut(s) 240, 465, 937, 1017
NmeAIII GCCGAG 2 cut(s) 88, 1069
NmuCI GTSAC 3 cut(s) 506, 956, 1027
NspV TTCGAA 1 cut(s) 1007
PceI AGGCCT 2 cut(s) 533, 1000
PciSI GCTCTTC 1 cut(s) 360
PdiI GCCGGC 1 cut(s) 484
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 518
PflMI CCANNNNNTGG 2 cut(s) 443, 719
PkrI GCNGC 5 cut(s) 9, 331, 361, 481, 847
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PpuMI RGGWCCY 2 cut(s) 125, 238
Psp5II RGGWCCY 2 cut(s) 125, 238
Psp6I CCWGG 6 cut(s) 121, 190, 371, 451, 583, 718
PspFI CCCAGC 2 cut(s) 737, 817
PspGI CCWGG 6 cut(s) 121, 190, 371, 451, 583, 718
PspN4I GGNNCC 4 cut(s) 240, 465, 937, 1017
PspPI GGNCC 5 cut(s) 125, 238, 455, 464, 608
PspPPI RGGWCCY 2 cut(s) 125, 238
PstI CTGCAG 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 128
PsuI RGATCY 4 cut(s) 16, 83, 94, 1015
RsaI GTAC 5 cut(s) 68, 325, 395, 470, 760
RsaNI GTAC 5 cut(s) 67, 324, 394, 469, 759
RseI CAYNNNNRTG 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 360
SatI GCNGC 5 cut(s) 8, 330, 360, 480, 846
Sau3AI GATC 9 cut(s) 16, 54, 83, 94, 170, 669, 703, 1015, 1038
Sau96I GGNCC 5 cut(s) 125, 238, 455, 464, 608
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 6 cut(s) 123, 192, 373, 453, 585, 720
SduI GDGCHC 3 cut(s) 179, 372, 745
SfaNI GCATC 2 cut(s) 558, 573
SfcI CTRYAG 1 cut(s) 327
SfuI TTCGAA 1 cut(s) 1007
SinI GGWCC 5 cut(s) 125, 238, 455, 464, 608
SmiMI CAYNNNNRTG 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 5 cut(s) 303, 438, 638, 751, 807
SseBI AGGCCT 2 cut(s) 533, 1000
SsiI CCGC 3 cut(s) 293, 629, 946
StuI AGGCCT 2 cut(s) 533, 1000
StyD4I CCNGG 6 cut(s) 121, 190, 371, 451, 583, 718
StyI CCWWGG 1 cut(s) 778
TaaI ACNGT 6 cut(s) 203, 468, 476, 572, 758, 932
TaqI TCGA 2 cut(s) 173, 1007
TasI AATT 5 cut(s) 303, 438, 638, 751, 807
TatI WGTACW 3 cut(s) 66, 323, 393
TfiI GAWTC 1 cut(s) 518
TscAI CASTG 4 cut(s) 52, 208, 565, 596
TseFI GTSAC 3 cut(s) 506, 956, 1027
TseI GCWGC 5 cut(s) 7, 329, 359, 479, 845
Tsp45I GTSAC 3 cut(s) 506, 956, 1027
TspDTI ATGAA 4 cut(s) 651, 804, 879, 903
TspGWI ACGGA 1 cut(s) 747
TspRI CASTG 4 cut(s) 52, 208, 565, 596
Van91I CCANNNNNTGG 2 cut(s) 443, 719
VpaK11BI GGWCC 5 cut(s) 125, 238, 455, 464, 608
XmnI GAANNNNTTC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.