Rw7G000940

glutamine synthetase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
793691 .. 796140
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G000940.1

Sequence Viewer

Length: 1071 bp
ATGTCTCTGCTTACTGATCTTATCAACCTCAACCTCTCAGATATCACTGGCAAGATTATCGCGGAATACATATGGGTCGGCGGATCTGGAATGGACGTTAGAAGCAAAGCCAGGACTCTTCCTGCACCAGTGAATGATCCTTCAAAACTACCCAAATGGAACTTTGATGGTTCTAGCACTGGCCAAGCTCCTGGAGAAGATAGTGAAATCATCTTATACCCACAAGCAATCTACAGGGACCCATTTAGGAGGGGCAACAACATCCTTGTGATATGTGATACTTACACACCAGCTGGAGAGCCAATTCCAACCAACAAGAGGGCTAAGGCTGCAAAGATCTTCAGCCATCCTGATGTTGTTGCTGAAGAGCCCTGGTATGGCTTAGAGCAAGAGTACACACTATTGCAGAAAGATGTACAATGGCCAATTGGGTGGCCTCTGGGTGGATATCCTGGAGCACAGGGACCGTACTACTGTGGTGTTGGCGCTGATAAGGCCTTTGGCCGTGACATTGTAGATTCTCACTACAAAGCTTGTCTTTATGCCGGTATTGACATCAGTGGCATCAATGGTGAAGTTATGCCTGGTCAGTGGGAATTCCAAGTTGGACCAACAGTTGGCATCGCTGCTGGAGATCAATTATGGGCAGCGCGTTACATTTTGGAGAGGATCACTGAGATAGCTGGAGTGGTGGTTTCATTTGATCCGAAACCAATTCCTGGTGACTGGAACGGTGCTGGTGCACACACTAATTTCAGCACCAAGACCATGAGAAAGGAAGGAGGCTATGAGGTGATCAAGAAGGCAATTGGGAAGCTTGGATTGAGGCACAAGGAACACATTGCCGCTTATGGCGAAGGCAATGAGCGCCGCCTCACCGGACGACATGAAACAGCAGACATTGACACATTCGTATGGGGTGTGGCGAACCGTGGAGCTTCGATAAGAGTTGGGAGGGACACTGAGAAAGAAGGAAAGGGCTATTTTGAGGACCGGAGGCCGGCTTCTAACATGGATCCTTATGTTGTCACCTCCATGATTGCTGAAACTACACTGCTCTGGAAACCATAG

Protein Analysis

356

Amino Acids

39.12

Weight (kDa)

5.78

Isoelectric Point (pI)

33.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gln-synt_N PF03951 32 - 97 4.3e-10 Glutamine synthetase, beta-Grasp domain
Gln-synt_C PF00120 126 - 347 1.7e-13 Glutamine synthetase, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 617, 719
AccII CGCG 2 cut(s) 62, 652
AciI CCGC 4 cut(s) 62, 81, 846, 871
AclWI GGATC 6 cut(s) 91, 131, 677, 698, 1010, 1023
AcoI YGGCCR 3 cut(s) 181, 422, 502
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 2 cut(s) 325, 384
AfaI GTAC 3 cut(s) 395, 417, 470
AfiI CCNNNNNNNGG 6 cut(s) 318, 377, 443, 617, 719, 1000
AgsI TTSAA 1 cut(s) 144
AjnI CCWGG 6 cut(s) 110, 190, 371, 451, 583, 718
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AluBI AGCT 6 cut(s) 188, 293, 533, 683, 817, 938
AluI AGCT 6 cut(s) 188, 293, 533, 683, 817, 938
Alw21I GWGCWC 2 cut(s) 460, 745
Alw26I GTCTC 1 cut(s) 9
Alw44I GTGCAC 1 cut(s) 741
AlwI GGATC 6 cut(s) 91, 131, 677, 698, 1010, 1023
AoxI GGCC 6 cut(s) 181, 422, 434, 495, 502, 998
ApaLI GTGCAC 1 cut(s) 741
ApeKI GCWGC 3 cut(s) 329, 626, 647
ApoI RAATTY 1 cut(s) 596
AspLEI GCGC 3 cut(s) 488, 652, 870
AspS9I GGNCC 4 cut(s) 238, 464, 608, 991
AsuHPI GGTGA 5 cut(s) 584, 734, 805, 868, 1021
AvaII GGWCC 4 cut(s) 238, 464, 608, 991
BaeGI GKGCMC 1 cut(s) 745
BalI TGGCCA 2 cut(s) 183, 424
BamHI GGATCC 1 cut(s) 1015
BanII GRGCYC 1 cut(s) 372
Bbv12I GWGCWC 2 cut(s) 460, 745
BbvI GCAGC 3 cut(s) 316, 613, 659
BccI CCATC 2 cut(s) 161, 354
BceAI ACGGC 1 cut(s) 489
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BciT130I CCWGG 6 cut(s) 112, 192, 373, 453, 585, 720
BclI TGATCA 1 cut(s) 795
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 174
BfmI CTRYAG 1 cut(s) 232
BfoI RGCGCY 2 cut(s) 489, 871
BglII AGATCT 1 cut(s) 336
BisI GCNGC 5 cut(s) 330, 627, 648, 846, 871
BlsI GCNGC 5 cut(s) 331, 628, 649, 847, 872
Bme1390I CCNGG 6 cut(s) 112, 192, 373, 453, 585, 720
Bme18I GGWCC 4 cut(s) 238, 464, 608, 991
BmgT120I GGNCC 4 cut(s) 238, 464, 608, 991
BmiI GGNNCC 4 cut(s) 239, 240, 465, 1017
BmrFI CCNGG 6 cut(s) 112, 192, 373, 453, 585, 720
BmsI GCATC 2 cut(s) 573, 630
BpmI CTGGAG 5 cut(s) 213, 315, 474, 651, 705
Bpu10I CCTNAGC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 371, 931
BsaWI WCCGGW 2 cut(s) 878, 993
BsaXI ACNNNNNCTCC 2 cut(s) 678, 708
Bsc4I CCNNNNNNNGG 6 cut(s) 318, 377, 443, 617, 719, 1000
Bse118I RCCGGY 2 cut(s) 545, 1000
Bse1I ACTGG 4 cut(s) 52, 128, 184, 731
Bse3DI GCAATG 2 cut(s) 840, 868
BseBI CCWGG 6 cut(s) 112, 192, 373, 453, 585, 720
BseDI CCNNGG 2 cut(s) 371, 931
BseGI GGATG 2 cut(s) 261, 346
BseLI CCNNNNNNNGG 6 cut(s) 318, 377, 443, 617, 719, 1000
BseMI GCAATG 2 cut(s) 840, 868
BseMII CTCAG 3 cut(s) 51, 666, 954
BseNI ACTGG 4 cut(s) 52, 128, 184, 731
BseSI GKGCMC 1 cut(s) 745
BseXI GCAGC 3 cut(s) 316, 613, 659
BsgI GTGCAG 1 cut(s) 108
Bsh1236I CGCG 2 cut(s) 62, 652
BshFI GGCC 6 cut(s) 183, 424, 436, 497, 504, 1000
BsiHKAI GWGCWC 2 cut(s) 460, 745
BsiSI CCGG 4 cut(s) 546, 879, 994, 1001
BslFI GGGAC 3 cut(s) 251, 477, 971
BslI CCNNNNNNNGG 6 cut(s) 318, 377, 443, 617, 719, 1000
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 3 cut(s) 251, 477, 971
BsnI GGCC 6 cut(s) 183, 424, 436, 497, 504, 1000
Bsp1286I GDGCHC 3 cut(s) 372, 460, 745
Bsp1407I TGTACA 1 cut(s) 415
Bsp143I GATC 9 cut(s) 16, 83, 136, 336, 634, 669, 703, 795, 1015
BspACI CCGC 4 cut(s) 62, 81, 846, 871
BspANI GGCC 6 cut(s) 183, 424, 436, 497, 504, 1000
BspCNI CTCAG 3 cut(s) 50, 667, 955
BspFNI CGCG 2 cut(s) 62, 652
BspLI GGNNCC 4 cut(s) 239, 240, 465, 1017
BspPI GGATC 6 cut(s) 91, 131, 677, 698, 1010, 1023
BspQI GCTCTTC 1 cut(s) 360
BsrDI GCAATG 2 cut(s) 840, 868
BsrFI RCCGGY 2 cut(s) 545, 1000
BsrGI TGTACA 1 cut(s) 415
BsrI ACTGG 4 cut(s) 52, 128, 184, 731
BssAI RCCGGY 2 cut(s) 545, 1000
BssECI CCNNGG 2 cut(s) 371, 931
BssMI GATC 9 cut(s) 16, 83, 136, 336, 634, 669, 703, 795, 1015
Bst2UI CCWGG 6 cut(s) 112, 192, 373, 453, 585, 720
Bst4CI ACNGT 5 cut(s) 468, 476, 616, 734, 932
Bst6I CTCTTC 2 cut(s) 123, 360
BstAUI TGTACA 1 cut(s) 415
BstC8I GCNNGC 1 cut(s) 1002
BstDEI CTNAG 5 cut(s) 37, 324, 382, 675, 963
BstDSI CCRYGG 1 cut(s) 931
BstF5I GGATG 2 cut(s) 261, 346
BstFNI CGCG 2 cut(s) 62, 652
BstH2I RGCGCY 2 cut(s) 489, 871
BstHHI GCGC 3 cut(s) 488, 652, 870
BstKTI GATC 9 cut(s) 19, 86, 139, 339, 637, 672, 706, 798, 1018
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 9 cut(s) 16, 83, 136, 336, 634, 669, 703, 795, 1015
BstMWI GCNNNNNNNGC 3 cut(s) 329, 494, 867
BstNI CCWGG 6 cut(s) 112, 192, 373, 453, 585, 720
BstSCI CCNGG 6 cut(s) 110, 190, 371, 451, 583, 718
BstSFI CTRYAG 1 cut(s) 232
BstSLI GKGCMC 1 cut(s) 745
BstUI CGCG 2 cut(s) 62, 652
BstV1I GCAGC 3 cut(s) 316, 613, 659
BstX2I RGATCY 3 cut(s) 83, 336, 1015
BstXI CCANNNNNNTGG 2 cut(s) 191, 432
BstYI RGATCY 3 cut(s) 83, 336, 1015
BsuRI GGCC 6 cut(s) 183, 424, 436, 497, 504, 1000
BtgI CCRYGG 1 cut(s) 931
BtgZI GCGATG 1 cut(s) 607
BtsCI GGATG 2 cut(s) 261, 346
BtsI GCAGTG 1 cut(s) 1052
BtsIMutI CAGTG 8 cut(s) 45, 135, 177, 565, 596, 672, 960, 1052
Cac8I GCNNGC 1 cut(s) 1002
CfoI GCGC 3 cut(s) 488, 652, 870
Cfr10I RCCGGY 2 cut(s) 545, 1000
Cfr13I GGNCC 4 cut(s) 238, 464, 608, 991
Csp6I GTAC 3 cut(s) 394, 416, 469
CviAII CATG 4 cut(s) 769, 887, 1012, 1036
CviQI GTAC 3 cut(s) 394, 416, 469
DdeI CTNAG 5 cut(s) 37, 324, 382, 675, 963
DpnI GATC 9 cut(s) 18, 85, 138, 338, 636, 671, 705, 797, 1017
DpnII GATC 9 cut(s) 16, 83, 136, 336, 634, 669, 703, 795, 1015
EaeI YGGCCR 3 cut(s) 181, 422, 502
Eam1104I CTCTTC 2 cut(s) 123, 360
EarI CTCTTC 2 cut(s) 123, 360
EciI GGCGGA 1 cut(s) 96
Eco147I AGGCCT 1 cut(s) 497
Eco24I GRGCYC 1 cut(s) 372
Eco32I GATATC 2 cut(s) 43, 449
Eco47I GGWCC 4 cut(s) 238, 464, 608, 991
Eco57I CTGAAG 2 cut(s) 325, 384
EcoO109I RGGNCCY 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 596
EcoRII CCWGG 6 cut(s) 110, 190, 371, 451, 583, 718
EcoRV GATATC 2 cut(s) 43, 449
EcoT38I GRGCYC 1 cut(s) 372
FaeI CATG 4 cut(s) 772, 890, 1015, 1039
FalI AAGNNNNNCTT 2 cut(s) 522, 554
FaqI GGGAC 3 cut(s) 251, 477, 971
FatI CATG 4 cut(s) 768, 886, 1011, 1035
FauNDI CATATG 1 cut(s) 71
FbaI TGATCA 1 cut(s) 795
Fnu4HI GCNGC 5 cut(s) 330, 627, 648, 846, 871
FokI GGATG 2 cut(s) 248, 333
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 5 cut(s) 330, 627, 648, 846, 871
FspBI CTAG 1 cut(s) 174
GlaI GCGC 3 cut(s) 487, 651, 869
GluI GCNGC 5 cut(s) 330, 627, 648, 846, 871
GsuI CTGGAG 5 cut(s) 213, 315, 474, 651, 705
HaeII RGCGCY 2 cut(s) 489, 871
HaeIII GGCC 6 cut(s) 183, 424, 436, 497, 504, 1000
HapII CCGG 4 cut(s) 546, 879, 994, 1001
HhaI GCGC 3 cut(s) 488, 652, 870
Hin1II CATG 4 cut(s) 772, 890, 1015, 1039
Hin6I GCGC 3 cut(s) 486, 650, 868
HinP1I GCGC 3 cut(s) 486, 650, 868
HindIII AAGCTT 2 cut(s) 531, 815
HinfI GANTC 2 cut(s) 115, 518
HpaII CCGG 4 cut(s) 546, 879, 994, 1001
HphI GGTGA 5 cut(s) 584, 734, 805, 868, 1021
Hpy166II GTNNAC 2 cut(s) 396, 743
Hpy188I TCNGA 2 cut(s) 40, 708
Hpy188III TCNNGA 4 cut(s) 87, 350, 799, 1060
Hpy8I GTNNAC 2 cut(s) 396, 743
HpyAV CCTTC 5 cut(s) 150, 773, 796, 851, 965
HpyCH4III ACNGT 5 cut(s) 468, 476, 616, 734, 932
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 4 cut(s) 125, 332, 406, 743
HpyF10VI GCNNNNNNNGC 3 cut(s) 329, 494, 867
HpyF3I CTNAG 5 cut(s) 37, 324, 382, 675, 963
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 4 cut(s) 772, 890, 1015, 1039
HspAI GCGC 3 cut(s) 486, 650, 868
KflI GGGWCCC 1 cut(s) 238
KroI GCCGGC 1 cut(s) 1000
KroNI GCCGGC 1 cut(s) 1002
Ksp22I TGATCA 1 cut(s) 795
Kzo9I GATC 9 cut(s) 16, 83, 136, 336, 634, 669, 703, 795, 1015
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 3 cut(s) 193, 455, 935
Lsp1109I GCAGC 3 cut(s) 316, 613, 659
LweI GCATC 2 cut(s) 573, 630
MaeI CTAG 1 cut(s) 174
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 4 cut(s) 506, 653, 722, 1027
MalI GATC 9 cut(s) 18, 85, 138, 338, 636, 671, 705, 797, 1017
MboI GATC 9 cut(s) 16, 83, 136, 336, 634, 669, 703, 795, 1015
MboII GAAGA 4 cut(s) 110, 209, 331, 377
MfeI CAATTG 2 cut(s) 426, 807
MflI RGATCY 3 cut(s) 83, 336, 1015
MhlI GDGCHC 3 cut(s) 372, 460, 745
MlsI TGGCCA 2 cut(s) 183, 424
MluCI AATT 7 cut(s) 303, 426, 596, 638, 714, 751, 807
MluNI TGGCCA 2 cut(s) 183, 424
MlyI GAGTC 1 cut(s) 109
MmeI TCCRAC 2 cut(s) 332, 586
Mox20I TGGCCA 2 cut(s) 183, 424
MroNI GCCGGC 1 cut(s) 1000
MscI TGGCCA 2 cut(s) 183, 424
MslI CAYNNNNRTG 4 cut(s) 266, 351, 913, 1034
Msp20I TGGCCA 2 cut(s) 183, 424
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 4 cut(s) 546, 879, 994, 1001
MspR9I CCNGG 6 cut(s) 112, 192, 373, 453, 585, 720
MunI CAATTG 2 cut(s) 426, 807
MvaI CCWGG 6 cut(s) 112, 192, 373, 453, 585, 720
MvnI CGCG 2 cut(s) 62, 652
MwoI GCNNNNNNNGC 3 cut(s) 329, 494, 867
NaeI GCCGGC 1 cut(s) 1002
NdeI CATATG 1 cut(s) 71
NdeII GATC 9 cut(s) 16, 83, 136, 336, 634, 669, 703, 795, 1015
NgoMIV GCCGGC 1 cut(s) 1000
NlaIII CATG 4 cut(s) 772, 890, 1015, 1039
NlaIV GGNNCC 4 cut(s) 239, 240, 465, 1017
NmuCI GTSAC 3 cut(s) 506, 722, 1027
PceI AGGCCT 1 cut(s) 497
PciSI GCTCTTC 1 cut(s) 360
PdiI GCCGGC 1 cut(s) 1002
PfeI GAWTC 1 cut(s) 518
PflMI CCANNNNNTGG 2 cut(s) 617, 719
PfoI TCCNGGA 2 cut(s) 190, 451
PkrI GCNGC 5 cut(s) 331, 628, 649, 847, 872
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PpuMI RGGWCCY 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 238
Psp6I CCWGG 6 cut(s) 110, 190, 371, 451, 583, 718
PspGI CCWGG 6 cut(s) 110, 190, 371, 451, 583, 718
PspN4I GGNNCC 4 cut(s) 239, 240, 465, 1017
PspPI GGNCC 4 cut(s) 238, 464, 608, 991
PspPPI RGGWCCY 1 cut(s) 238
PsuI RGATCY 3 cut(s) 83, 336, 1015
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 3 cut(s) 395, 417, 470
RsaNI GTAC 3 cut(s) 394, 416, 469
RseI CAYNNNNRTG 4 cut(s) 266, 351, 913, 1034
SapI GCTCTTC 1 cut(s) 360
SatI GCNGC 5 cut(s) 330, 627, 648, 846, 871
Sau3AI GATC 9 cut(s) 16, 83, 136, 336, 634, 669, 703, 795, 1015
Sau96I GGNCC 4 cut(s) 238, 464, 608, 991
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 6 cut(s) 112, 192, 373, 453, 585, 720
SduI GDGCHC 3 cut(s) 372, 460, 745
SfaNI GCATC 2 cut(s) 573, 630
SfcI CTRYAG 1 cut(s) 232
SinI GGWCC 4 cut(s) 238, 464, 608, 991
SmiMI CAYNNNNRTG 4 cut(s) 266, 351, 913, 1034
Sse9I AATT 7 cut(s) 303, 426, 596, 638, 714, 751, 807
SseBI AGGCCT 1 cut(s) 497
SsiI CCGC 4 cut(s) 62, 81, 846, 871
SspMI CTAG 1 cut(s) 174
StuI AGGCCT 1 cut(s) 497
StyD4I CCNGG 6 cut(s) 110, 190, 371, 451, 583, 718
TaaI ACNGT 5 cut(s) 468, 476, 616, 734, 932
TaiI ACGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 941
TasI AATT 7 cut(s) 303, 426, 596, 638, 714, 751, 807
TatI WGTACW 2 cut(s) 393, 415
TauI GCSGC 2 cut(s) 848, 873
TfiI GAWTC 1 cut(s) 518
TscAI CASTG 8 cut(s) 52, 135, 184, 565, 596, 679, 967, 1059
TseFI GTSAC 3 cut(s) 506, 722, 1027
TseI GCWGC 3 cut(s) 329, 626, 647
Tsp45I GTSAC 3 cut(s) 506, 722, 1027
TspDTI ATGAA 2 cut(s) 687, 903
TspRI CASTG 8 cut(s) 52, 135, 184, 565, 596, 679, 967, 1059
Van91I CCANNNNNTGG 2 cut(s) 617, 719
VneI GTGCAC 1 cut(s) 741
VpaK11BI GGWCC 4 cut(s) 238, 464, 608, 991
XapI RAATTY 1 cut(s) 596
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.