Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001207

Physical Location & Seq

Genomic Coordinates Reverse (-)

18530033 .. 18533814

Gene Structure 3782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G166500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTCGCTGCTCTCAGATCTCATCAACCTTGACCTCTCAGACTCCACCGAGAAGGTGATCGCAGAGTACATATGGATTGGTGGATCTGGTATGGACCTCAGAAGCAAAGCAAGGACTCTGCCAGGACCCGTTAGTGACCCCTCAAAGCTTCCCAAGTGGAATTATGATGGTTCCAGCACTGGCCAAGCCCCTGGAGAAGATAGTGAAGTCATCTTATACCCTCAAGCCATTTTCAAGGATCCATTTAGGAGAGGCAACAATATTTTGGTAATATGCGATGCTTACACTCCCGCTGGAGAACCAATTCCAACAAACAAAAGGGCTGCTGCTGCAAAGATTTTCAGCCATCCTGATGTTGTTGCTGAAGTACCCTGGTACGGCATTGAACAGGAGTACACCTTGTTGCAGAAAGATGTCCACTGGCCGCTTGGGTGGCCTGTTGGTGGTTATCCAGGACCTCAGGGGCCATACTATTGTGCTGCTGGTGCTGACAAAGCCTTTGGGCGTGACATTGTTGACTCGCATTACAAGGCCTGCCTGTACGCAGGCATCAACATTAGTGGGATCAATGGTGAAGTCATGCCAGGCCAGTGGGAATTTCAAGTTGGTCCTTCTGTCGGCATATCCGCGGGAGATGAACTATGGGCTGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGGGGTGGTGCTTTCTTTTGATCCCAAGCCAATCCAGGGTGATTGGAACGGAGCTGGTGCTCACACAAATTACAGGTATAATGCCAATTCTTTAGCTAATGGAGGCTATGAAGTCATCAAGAAAGCAATTGAAAAGCTGGGACTAAGGCACAAAGAACACATTGCTGCATATGGAGAAGGCAATGAACGCCGTTTAACAGGAAAGCACGAAACAGCTGATATCAACACTTTCAAATGGGGTGTTGCAAACCGCGGTGCCTCAATCCGTGTTGGAAGAGACACAGAGAAAGAGGGCAAAGGCTATTTTGAGGACAGGAGGCCGGCTTCGAACATGGATCCATATGTTGTCACTTCTTTGATTGCAGAAACCACCATTCTGAGGAAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Gln-synt_C Gln-synt_N

Protein Analysis

358

Amino Acids

39.1

Weight (kDa)

5.73

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48470 AT1G66200 AT1G66200 AT1G66200 AT3G17820 AT5G16570 AT5G16570 AT5G37600
fragaria_vesca	FvH4_1g30220 FvH4_3g32400 FvH4_4g36850 FvH4_5g17650
malus_domestica	MD09G1270600.v1.1 MD13G1006600.v1.1 MD14G1238700.v1.1 MD16G1001400.v1.1 MD17G1268700.v1.1
prunus_persica	Prupe.1G346600_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.5G236300_v2.0.a1
pyrus_communis	pycom09g18170 pycom14g19980 pycom17g26730
rosa_chinensis	RchiOBHm_Chr3g0491191 RchiOBHm_Chr4g0446601 RchiOBHm_Chr7g0178021
rosa_laevigata	RLG00000005481 RLG00000005647 RLG00000022854
rosa_multiflora	Rmu_sc0014162.1_g000003 Rmu_sc0015729.1_g000003 Rmu_sc0019011.1_g000005 Rmu_ssc0000144.1_g000004
rosa_roxburghii	Rroxscaffold_3G00275280 Rroxscaffold_5G00386990 Rroxscaffold_6G00393090
rosa_rugosa	Rorug03G0247600 Rorug04G0372700 Rorug06G0412400 Rorug06G0412400
rosa_samantha	Rh3BG333800 Rh3DG331200 Rh4AG434300 Rh4BG443500 Rh4CG460800 Rh4DG442300 Rh7AG011900 Rh7BG011300 Rh7CG011900 Rh7DG011900
rosa_wichuraiana	Rw3G026210 Rw3G026250 Rw4G037130 Rw7G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	938
AccII	CGCG	2 cut(s)	629, 936
AciI	CCGC	6 cut(s)	291, 425, 627, 629, 934, 936
AclWI	GGATC	8 cut(s)	91, 233, 246, 572, 677, 698, 1013, 1026
AcoI	YGGCCR	2 cut(s)	181, 422
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	5 cut(s)	68, 369, 377, 395, 542
AfiI	CCNNNNNNNGG	5 cut(s)	377, 443, 617, 719, 1062
AgsI	TTSAA	5 cut(s)	235, 386, 602, 815, 916
AjnI	CCWGG	6 cut(s)	121, 190, 371, 451, 583, 717
AjuI	GAANNNNNNNTTGG	2 cut(s)	588, 620
AluBI	AGCT	5 cut(s)	148, 737, 779, 820, 899
AluI	AGCT	5 cut(s)	148, 737, 779, 820, 899
Alw21I	GWGCWC	1 cut(s)	745
Alw26I	GTCTC	1 cut(s)	954
AlwI	GGATC	8 cut(s)	91, 233, 246, 572, 677, 698, 1013, 1026
AoxI	GGCC	7 cut(s)	181, 422, 434, 464, 531, 586, 1001
ApeKI	GCWGC	7 cut(s)	7, 323, 326, 329, 479, 647, 848
ApoI	RAATTY	1 cut(s)	596
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
Asp700I	GAANNNNTTC	1 cut(s)	303
AspS9I	GGNCC	5 cut(s)	94, 125, 455, 464, 608
AsuHPI	GGTGA	3 cut(s)	67, 584, 734
AsuII	TTCGAA	1 cut(s)	1010
AvaII	GGWCC	4 cut(s)	94, 125, 455, 608
AxyI	CCTNAGG	1 cut(s)	459
BalI	TGGCCA	1 cut(s)	183
BamHI	GGATCC	2 cut(s)	238, 1018
BanI	GGYRCC	1 cut(s)	938
Bbv12I	GWGCWC	1 cut(s)	745
BbvI	GCAGC	6 cut(s)	310, 313, 316, 466, 634, 835
BccI	CCATC	2 cut(s)	161, 354
BceAI	ACGGC	2 cut(s)	394, 858
BciT130I	CCWGG	6 cut(s)	123, 192, 373, 453, 585, 719
BcoDI	GTCTC	1 cut(s)	954
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	8 cut(s)	8, 324, 327, 330, 425, 480, 648, 849
BlsI	GCNGC	8 cut(s)	9, 325, 328, 331, 426, 481, 649, 850
Bme1390I	CCNGG	6 cut(s)	123, 192, 373, 453, 585, 719
Bme18I	GGWCC	4 cut(s)	94, 125, 455, 608
BmgT120I	GGNCC	5 cut(s)	94, 125, 455, 464, 608
BmiI	GGNNCC	6 cut(s)	127, 172, 240, 465, 940, 1020
BmrFI	CCNGG	6 cut(s)	123, 192, 373, 453, 585, 719
BmsI	GCATC	2 cut(s)	268, 558
BpmI	CTGGAG	2 cut(s)	213, 315
Bpu14I	TTCGAA	1 cut(s)	1010
BpuEI	CTTGAG	1 cut(s)	207
BsaJI	CCNNGG	5 cut(s)	190, 371, 627, 718, 934
Bsc4I	CCNNNNNNNGG	5 cut(s)	377, 443, 617, 719, 1062
Bse118I	RCCGGY	1 cut(s)	1003
Bse1I	ACTGG	3 cut(s)	184, 425, 589
Bse21I	CCTNAGG	1 cut(s)	459
Bse3DI	GCAATG	2 cut(s)	843, 871
BseBI	CCWGG	6 cut(s)	123, 192, 373, 453, 585, 719
BseDI	CCNNGG	5 cut(s)	190, 371, 627, 718, 934
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	5 cut(s)	377, 443, 617, 719, 1062
BseMI	GCAATG	2 cut(s)	843, 871
BseMII	CTCAG	5 cut(s)	27, 51, 112, 473, 1052
BseNI	ACTGG	3 cut(s)	184, 425, 589
BseXI	GCAGC	6 cut(s)	310, 313, 316, 466, 634, 835
BseYI	CCCAGC	2 cut(s)	683, 820
Bsh1236I	CGCG	2 cut(s)	629, 936
BshFI	GGCC	7 cut(s)	183, 424, 436, 466, 533, 588, 1003
BshNI	GGYRCC	1 cut(s)	938
BsiHKAI	GWGCWC	1 cut(s)	745
BsiSI	CCGG	1 cut(s)	1004
BslFI	GGGAC	1 cut(s)	837
BslI	CCNNNNNNNGG	5 cut(s)	377, 443, 617, 719, 1062
BsmAI	GTCTC	1 cut(s)	954
BsmFI	GGGAC	1 cut(s)	837
BsnI	GGCC	7 cut(s)	183, 424, 436, 466, 533, 588, 1003
Bsp119I	TTCGAA	1 cut(s)	1010
Bsp1286I	GDGCHC	1 cut(s)	745
Bsp143I	GATC	8 cut(s)	16, 57, 83, 238, 564, 669, 703, 1018
BspACI	CCGC	6 cut(s)	291, 425, 627, 629, 934, 936
BspANI	GGCC	7 cut(s)	183, 424, 436, 466, 533, 588, 1003
BspCNI	CTCAG	5 cut(s)	26, 50, 111, 472, 1053
BspFNI	CGCG	2 cut(s)	629, 936
BspLI	GGNNCC	6 cut(s)	127, 172, 240, 465, 940, 1020
BspPI	GGATC	8 cut(s)	91, 233, 246, 572, 677, 698, 1013, 1026
BspT104I	TTCGAA	1 cut(s)	1010
BspT107I	GGYRCC	1 cut(s)	938
BsrDI	GCAATG	2 cut(s)	843, 871
BsrFI	RCCGGY	1 cut(s)	1003
BsrI	ACTGG	3 cut(s)	184, 425, 589
BssAI	RCCGGY	1 cut(s)	1003
BssECI	CCNNGG	5 cut(s)	190, 371, 627, 718, 934
BssMI	GATC	8 cut(s)	16, 57, 83, 238, 564, 669, 703, 1018
Bst2UI	CCWGG	6 cut(s)	123, 192, 373, 453, 585, 719
Bst6I	CTCTTC	1 cut(s)	952
BstBI	TTCGAA	1 cut(s)	1010
BstC8I	GCNNGC	3 cut(s)	535, 547, 1005
BstDEI	CTNAG	6 cut(s)	13, 37, 98, 459, 827, 1061
BstDSI	CCRYGG	2 cut(s)	627, 934
BstF5I	GGATG	1 cut(s)	346
BstFNI	CGCG	2 cut(s)	629, 936
BstKTI	GATC	8 cut(s)	19, 60, 86, 241, 567, 672, 706, 1021
BstMAI	GTCTC	1 cut(s)	954
BstMBI	GATC	8 cut(s)	16, 57, 83, 238, 564, 669, 703, 1018
BstMWI	GCNNNNNNNGC	5 cut(s)	329, 433, 485, 494, 870
BstNI	CCWGG	6 cut(s)	123, 192, 373, 453, 585, 719
BstSCI	CCNGG	6 cut(s)	121, 190, 371, 451, 583, 717
BstUI	CGCG	2 cut(s)	629, 936
BstV1I	GCAGC	6 cut(s)	310, 313, 316, 466, 634, 835
BstX2I	RGATCY	4 cut(s)	16, 83, 238, 1018
BstXI	CCANNNNNNTGG	2 cut(s)	191, 591
BstYI	RGATCY	4 cut(s)	16, 83, 238, 1018
Bsu36I	CCTNAGG	1 cut(s)	459
BsuRI	GGCC	7 cut(s)	183, 424, 436, 466, 533, 588, 1003
BtgI	CCRYGG	2 cut(s)	627, 934
BtgZI	GCGATG	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	346
BtsIMutI	CAGTG	3 cut(s)	177, 418, 596
Cac8I	GCNNGC	3 cut(s)	535, 547, 1005
Cfr10I	RCCGGY	1 cut(s)	1003
Cfr13I	GGNCC	5 cut(s)	94, 125, 455, 464, 608
Cfr42I	CCGCGG	2 cut(s)	630, 937
Csp6I	GTAC	5 cut(s)	67, 368, 376, 394, 541
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviAII	CATG	2 cut(s)	580, 1015
CviQI	GTAC	5 cut(s)	67, 368, 376, 394, 541
DdeI	CTNAG	6 cut(s)	13, 37, 98, 459, 827, 1061
DpnI	GATC	8 cut(s)	18, 59, 85, 240, 566, 671, 705, 1020
DpnII	GATC	8 cut(s)	16, 57, 83, 238, 564, 669, 703, 1018
EaeI	YGGCCR	2 cut(s)	181, 422
Eam1104I	CTCTTC	1 cut(s)	952
EarI	CTCTTC	1 cut(s)	952
Eco147I	AGGCCT	1 cut(s)	533
Eco32I	GATATC	1 cut(s)	904
Eco47I	GGWCC	4 cut(s)	94, 125, 455, 608
Eco57I	CTGAAG	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	459
EcoO109I	RGGNCCY	2 cut(s)	125, 455
EcoRII	CCWGG	6 cut(s)	121, 190, 371, 451, 583, 717
EcoRV	GATATC	1 cut(s)	904
FaeI	CATG	2 cut(s)	583, 1018
FaqI	GGGAC	1 cut(s)	837
FatI	CATG	2 cut(s)	579, 1014
FauI	CCCGC	2 cut(s)	298, 622
FauNDI	CATATG	3 cut(s)	71, 853, 1024
Fnu4HI	GCNGC	8 cut(s)	8, 324, 327, 330, 425, 480, 648, 849
FokI	GGATG	1 cut(s)	333
Fsp4HI	GCNGC	8 cut(s)	8, 324, 327, 330, 425, 480, 648, 849
GluI	GCNGC	8 cut(s)	8, 324, 327, 330, 425, 480, 648, 849
GsaI	CCCAGC	2 cut(s)	687, 824
GsuI	CTGGAG	2 cut(s)	213, 315
HaeIII	GGCC	7 cut(s)	183, 424, 436, 466, 533, 588, 1003
HapII	CCGG	1 cut(s)	1004
Hin1II	CATG	2 cut(s)	583, 1018
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	3 cut(s)	41, 115, 518
HpaII	CCGG	1 cut(s)	1004
HphI	GGTGA	3 cut(s)	67, 584, 734
Hpy166II	GTNNAC	3 cut(s)	396, 418, 517
Hpy188I	TCNGA	4 cut(s)	16, 40, 101, 1062
Hpy188III	TCNNGA	2 cut(s)	350, 802
Hpy8I	GTNNAC	3 cut(s)	396, 418, 517
HpyAV	CCTTC	3 cut(s)	46, 621, 854
HpyCH4V	TGCA	5 cut(s)	332, 406, 851, 929, 1046
HpyF10VI	GCNNNNNNNGC	5 cut(s)	329, 433, 485, 494, 870
HpyF3I	CTNAG	6 cut(s)	13, 37, 98, 459, 827, 1061
Hsp92II	CATG	2 cut(s)	583, 1018
KroI	GCCGGC	1 cut(s)	1003
KroNI	GCCGGC	1 cut(s)	1005
KspI	CCGCGG	2 cut(s)	630, 937
Kzo9I	GATC	8 cut(s)	16, 57, 83, 238, 564, 669, 703, 1018
LmnI	GCTCC	1 cut(s)	734
Lsp1109I	GCAGC	6 cut(s)	310, 313, 316, 466, 634, 835
LweI	GCATC	2 cut(s)	268, 558
MaeIII	GTNAC	4 cut(s)	134, 506, 653, 1030
MalI	GATC	8 cut(s)	18, 59, 85, 240, 566, 671, 705, 1020
MboI	GATC	8 cut(s)	16, 57, 83, 238, 564, 669, 703, 1018
MboII	GAAGA	2 cut(s)	209, 969
MfeI	CAATTG	1 cut(s)	810
MflI	RGATCY	4 cut(s)	16, 83, 238, 1018
MhlI	GDGCHC	1 cut(s)	745
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	6 cut(s)	160, 303, 596, 751, 769, 810
MluNI	TGGCCA	1 cut(s)	183
MlyI	GAGTC	3 cut(s)	35, 109, 512
MmeI	TCCRAC	2 cut(s)	332, 934
Mox20I	TGGCCA	1 cut(s)	183
MroNI	GCCGGC	1 cut(s)	1003
MroXI	GAANNNNTTC	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	1 cut(s)	878
MslI	CAYNNNNRTG	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	183
MspA1I	CMGCKG	4 cut(s)	293, 629, 899, 936
MspI	CCGG	1 cut(s)	1004
MspR9I	CCNGG	6 cut(s)	123, 192, 373, 453, 585, 719
MunI	CAATTG	1 cut(s)	810
MvaI	CCWGG	6 cut(s)	123, 192, 373, 453, 585, 719
MvnI	CGCG	2 cut(s)	629, 936
MwoI	GCNNNNNNNGC	5 cut(s)	329, 433, 485, 494, 870
NaeI	GCCGGC	1 cut(s)	1005
NdeI	CATATG	3 cut(s)	71, 853, 1024
NdeII	GATC	8 cut(s)	16, 57, 83, 238, 564, 669, 703, 1018
NgoMIV	GCCGGC	1 cut(s)	1003
NlaIII	CATG	2 cut(s)	583, 1018
NlaIV	GGNNCC	6 cut(s)	127, 172, 240, 465, 940, 1020
NmuCI	GTSAC	3 cut(s)	134, 506, 1030
NspV	TTCGAA	1 cut(s)	1010
PceI	AGGCCT	1 cut(s)	533
PdiI	GCCGGC	1 cut(s)	1005
PdmI	GAANNNNTTC	1 cut(s)	303
PfoI	TCCNGGA	1 cut(s)	451
PkrI	GCNGC	8 cut(s)	9, 325, 328, 331, 426, 481, 649, 850
PleI	GAGTC	3 cut(s)	35, 109, 512
PpsI	GAGTC	3 cut(s)	35, 109, 512
PpuMI	RGGWCCY	2 cut(s)	125, 455
Psp5II	RGGWCCY	2 cut(s)	125, 455
Psp6I	CCWGG	6 cut(s)	121, 190, 371, 451, 583, 717
PspFI	CCCAGC	2 cut(s)	683, 820
PspGI	CCWGG	6 cut(s)	121, 190, 371, 451, 583, 717
PspN4I	GGNNCC	6 cut(s)	127, 172, 240, 465, 940, 1020
PspPI	GGNCC	5 cut(s)	94, 125, 455, 464, 608
PspPPI	RGGWCCY	2 cut(s)	125, 455
PsuI	RGATCY	4 cut(s)	16, 83, 238, 1018
PvuII	CAGCTG	1 cut(s)	899
RsaI	GTAC	5 cut(s)	68, 369, 377, 395, 542
RsaNI	GTAC	5 cut(s)	67, 368, 376, 394, 541
RseI	CAYNNNNRTG	1 cut(s)	351
SacII	CCGCGG	2 cut(s)	630, 937
SaqAI	TTAA	1 cut(s)	878
SatI	GCNGC	8 cut(s)	8, 324, 327, 330, 425, 480, 648, 849
Sau3AI	GATC	8 cut(s)	16, 57, 83, 238, 564, 669, 703, 1018
Sau96I	GGNCC	5 cut(s)	94, 125, 455, 464, 608
SchI	GAGTC	3 cut(s)	35, 109, 512
ScrFI	CCNGG	6 cut(s)	123, 192, 373, 453, 585, 719
SduI	GDGCHC	1 cut(s)	745
SfaNI	GCATC	2 cut(s)	268, 558
Sfr303I	CCGCGG	2 cut(s)	630, 937
SfuI	TTCGAA	1 cut(s)	1010
SgrBI	CCGCGG	2 cut(s)	630, 937
SinI	GGWCC	4 cut(s)	94, 125, 455, 608
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	6 cut(s)	160, 303, 596, 751, 769, 810
SseBI	AGGCCT	1 cut(s)	533
SsiI	CCGC	6 cut(s)	291, 425, 627, 629, 934, 936
SspI	AATATT	1 cut(s)	262
StuI	AGGCCT	1 cut(s)	533
StyD4I	CCNGG	6 cut(s)	121, 190, 371, 451, 583, 717
TaqI	TCGA	1 cut(s)	1010
TasI	AATT	6 cut(s)	160, 303, 596, 751, 769, 810
TatI	WGTACW	2 cut(s)	66, 393
TauI	GCSGC	1 cut(s)	427
Tru1I	TTAA	1 cut(s)	878
Tru9I	TTAA	1 cut(s)	878
TscAI	CASTG	3 cut(s)	184, 425, 596
TseFI	GTSAC	3 cut(s)	134, 506, 1030
TseI	GCWGC	7 cut(s)	7, 323, 326, 329, 479, 647, 848
Tsp45I	GTSAC	3 cut(s)	134, 506, 1030
TspDTI	ATGAA	3 cut(s)	651, 807, 882
TspGWI	ACGGA	2 cut(s)	747, 938
TspRI	CASTG	3 cut(s)	184, 425, 596
VpaK11BI	GGWCC	4 cut(s)	94, 125, 455, 608
XapI	RAATTY	1 cut(s)	596
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.