Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001207

Physical Location & Seq

Genomic Coordinates Forward (+)

64356181 .. 64359732

Gene Structure 3552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG442300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTCTCTCCTCTCTGATATCATCAACCTCAACCTCTCGGAATCCACCCAGAAGATCATCGCAGAATACATATGGATAGGTGGATCTGGTACGGACTTGAGAAGCAAAGCCAGGACCCTGCCTGGGCCGGTTGAAGACCCAGCAAAGCTACCAAAGTGGAACTACGACGGTTCGAGCACAAACCAAGCTCCAGGGGACGATAGTGAAGTGATCTTATATCCCCAGGCTATTTTCAAGGACCCATTCAGAAGAGGGAGCAATATCTTGGTGATATGCGATGCGTATACGCCGGCCGGAGAGCCGATCCCTACCAACAAGAGGGCAGCTGCTGCCAAGATATTCAGCCACCCCGACGTTGCCAAAGAAGAGCCTTGGTATGGAATTGAGCAGGAGTATACTCTTCTTCAGAAGGATACAAATTGGCCGCTTGGGTGGCCTATTGGTGGCTTCCCTGGTCCACAGGGGCCCTACTACTGTGGTGCAGGAGCAGACAAGGCCTTCGGGCGTGATATAGTTGATGCTCACTACAAGGCCTGCCTCTATGCTGGAATCAATATCAGTGGCATCAATGCCGAGGTTATGCCAGGCCAGTGGGAATTTCAAGTTGGTCCTACTGAAGGTATTGCTGCTGGTGATCAAATATGGGCTGCTCGATACATCCTTGAGAGAATCACAGAAATTGCAGGAGTTGTTCTTTCTTTGGACCCTAAACCAATCAAGGGTGACTGGAACGGTGCCGGTGCTCACTGTAACTACAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Gln-synt_C Gln-synt_N

Protein Analysis

253

Amino Acids

27.55

Weight (kDa)

4.94

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gln-synt_N	PF03951	31 - 97	2.9e-08	Glutamine synthetase, beta-Grasp domain
Gln-synt_C	PF00120	123 - 251	5.3e-10	Glutamine synthetase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48470 AT1G66200 AT1G66200 AT1G66200 AT3G17820 AT5G16570 AT5G16570 AT5G37600
fragaria_vesca	FvH4_1g30220 FvH4_3g32400 FvH4_4g36850 FvH4_5g17650
malus_domestica	MD09G1270600.v1.1 MD13G1006600.v1.1 MD14G1238700.v1.1 MD16G1001400.v1.1 MD17G1268700.v1.1
prunus_persica	Prupe.1G346600_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.5G236300_v2.0.a1
pyrus_communis	pycom09g18170 pycom14g19980 pycom17g26730
rosa_chinensis	RchiOBHm_Chr3g0491191 RchiOBHm_Chr4g0446601 RchiOBHm_Chr7g0178021
rosa_laevigata	RLG00000005481 RLG00000005647 RLG00000022854
rosa_multiflora	Rmu_sc0014162.1_g000003 Rmu_sc0015729.1_g000003 Rmu_sc0019011.1_g000005 Rmu_ssc0000144.1_g000004
rosa_roxburghii	Rroxscaffold_3G00275280 Rroxscaffold_5G00386990 Rroxscaffold_6G00393090
rosa_rugosa	Rorug03G0247600 Rorug04G0372700 Rorug06G0412400 Rorug06G0412400
rosa_samantha	Rh3BG333800 Rh3DG331200 Rh4AG434300 Rh4BG443500 Rh4CG460800 Rh4DG442300 Rh7AG011900 Rh7BG011300 Rh7CG011900 Rh7DG011900
rosa_wichuraiana	Rw3G026210 Rw3G026250 Rw4G037130 Rw7G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	734
AccI	GTMKAC	2 cut(s)	284, 395
AciI	CCGC	1 cut(s)	425
AclWI	GGATC	2 cut(s)	91, 298
AcoI	YGGCCR	2 cut(s)	291, 422
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	2 cut(s)	389, 636
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	6 cut(s)	123, 318, 377, 443, 617, 719
AgsI	TTSAA	3 cut(s)	134, 235, 602
AjnI	CCWGG	6 cut(s)	110, 121, 190, 222, 451, 583
AjuI	GAANNNNNNNTTGG	2 cut(s)	588, 620
AluBI	AGCT	3 cut(s)	148, 188, 326
AluI	AGCT	3 cut(s)	148, 188, 326
Alw21I	GWGCWC	2 cut(s)	179, 745
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	91, 298
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	8 cut(s)	125, 291, 422, 434, 464, 495, 531, 586
ApaI	GGGCCC	1 cut(s)	468
ApeKI	GCWGC	5 cut(s)	323, 326, 329, 626, 647
ApoI	RAATTY	1 cut(s)	596
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
AspS9I	GGNCC	8 cut(s)	114, 125, 238, 455, 464, 465, 608, 703
AsuHPI	GGTGA	3 cut(s)	280, 644, 734
AvaII	GGWCC	5 cut(s)	114, 238, 455, 608, 703
BaeGI	GKGCMC	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	734
BanII	GRGCYC	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	2 cut(s)	179, 745
BbvI	GCAGC	5 cut(s)	313, 316, 335, 613, 634
BciT130I	CCWGG	6 cut(s)	112, 123, 192, 224, 453, 585
BciVI	GTATCC	1 cut(s)	406
BclI	TGATCA	1 cut(s)	634
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	754
BfuI	GTATCC	1 cut(s)	406
BisI	GCNGC	6 cut(s)	324, 327, 330, 425, 627, 648
BlsI	GCNGC	6 cut(s)	325, 328, 331, 426, 628, 649
Bme1390I	CCNGG	6 cut(s)	112, 123, 192, 224, 453, 585
Bme18I	GGWCC	5 cut(s)	114, 238, 455, 608, 703
BmgT120I	GGNCC	8 cut(s)	114, 125, 238, 455, 464, 465, 608, 703
BmiI	GGNNCC	6 cut(s)	116, 240, 465, 466, 705, 736
BmrFI	CCNGG	6 cut(s)	112, 123, 192, 224, 453, 585
BmsI	GCATC	3 cut(s)	268, 508, 573
BpiI	GAAGAC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	174
BpuEI	CTTGAG	2 cut(s)	118, 683
BsaJI	CCNNGG	6 cut(s)	122, 191, 222, 371, 451, 573
Bsc4I	CCNNNNNNNGG	6 cut(s)	123, 318, 377, 443, 617, 719
Bse118I	RCCGGY	3 cut(s)	127, 289, 737
Bse1I	ACTGG	2 cut(s)	589, 731
BseBI	CCWGG	6 cut(s)	112, 123, 192, 224, 453, 585
BseDI	CCNNGG	6 cut(s)	122, 191, 222, 371, 451, 573
BseGI	GGATG	1 cut(s)	657
BseLI	CCNNNNNNNGG	6 cut(s)	123, 318, 377, 443, 617, 719
BseNI	ACTGG	2 cut(s)	589, 731
BseSI	GKGCMC	1 cut(s)	468
BseX3I	CGGCCG	1 cut(s)	291
BseXI	GCAGC	5 cut(s)	313, 316, 335, 613, 634
BseYI	CCCAGC	1 cut(s)	139
BsgI	GTGCAG	1 cut(s)	501
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	8 cut(s)	127, 293, 424, 436, 466, 497, 533, 588
BshNI	GGYRCC	1 cut(s)	734
BsiEI	CGRYCG	1 cut(s)	294
BsiHKAI	GWGCWC	2 cut(s)	179, 745
BsiSI	CCGG	4 cut(s)	128, 290, 294, 738
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	6 cut(s)	123, 318, 377, 443, 617, 719
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	8 cut(s)	127, 293, 424, 436, 466, 497, 533, 588
Bsp120I	GGGCCC	1 cut(s)	464
Bsp1286I	GDGCHC	3 cut(s)	179, 468, 745
Bsp143I	GATC	5 cut(s)	54, 83, 210, 303, 634
BspACI	CCGC	1 cut(s)	425
BspANI	GGCC	8 cut(s)	127, 293, 424, 436, 466, 497, 533, 588
BspLI	GGNNCC	6 cut(s)	116, 240, 465, 466, 705, 736
BspPI	GGATC	2 cut(s)	91, 298
BspQI	GCTCTTC	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	734
BsrFI	RCCGGY	3 cut(s)	127, 289, 737
BsrI	ACTGG	2 cut(s)	589, 731
BssAI	RCCGGY	3 cut(s)	127, 289, 737
BssECI	CCNNGG	6 cut(s)	122, 191, 222, 371, 451, 573
BssMI	GATC	5 cut(s)	54, 83, 210, 303, 634
BssNAI	GTATAC	2 cut(s)	285, 396
BssT1I	CCWWGG	1 cut(s)	371
Bst1107I	GTATAC	2 cut(s)	285, 396
Bst2UI	CCWGG	6 cut(s)	112, 123, 192, 224, 453, 585
Bst4CI	ACNGT	4 cut(s)	170, 476, 734, 749
Bst6I	CTCTTC	3 cut(s)	244, 360, 405
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	291, 535
BstENI	CCTNNNNNAGG	1 cut(s)	615
BstF5I	GGATG	1 cut(s)	657
BstKTI	GATC	5 cut(s)	57, 86, 213, 306, 637
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	5 cut(s)	54, 83, 210, 303, 634
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 433, 494
BstNI	CCWGG	6 cut(s)	112, 123, 192, 224, 453, 585
BstSCI	CCNGG	6 cut(s)	110, 121, 190, 222, 451, 583
BstSFI	CTRYAG	1 cut(s)	754
BstSLI	GKGCMC	1 cut(s)	468
BstV1I	GCAGC	5 cut(s)	313, 316, 335, 613, 634
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	83
BstXI	CCANNNNNNTGG	1 cut(s)	591
BstYI	RGATCY	1 cut(s)	83
BstZ17I	GTATAC	2 cut(s)	285, 396
BstZI	CGGCCG	1 cut(s)	291
BsuI	GTATCC	1 cut(s)	406
BsuRI	GGCC	8 cut(s)	127, 293, 424, 436, 466, 497, 533, 588
BtgZI	GCGATG	2 cut(s)	43, 291
BtsCI	GGATG	1 cut(s)	657
BtsIMutI	CAGTG	3 cut(s)	565, 596, 745
Cac8I	GCNNGC	2 cut(s)	291, 535
CaiI	CAGNNNCTG	1 cut(s)	329
Cfr10I	RCCGGY	3 cut(s)	127, 289, 737
Cfr13I	GGNCC	8 cut(s)	114, 125, 238, 455, 464, 465, 608, 703
Csp6I	GTAC	1 cut(s)	90
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviQI	GTAC	1 cut(s)	90
DpnI	GATC	5 cut(s)	56, 85, 212, 305, 636
DpnII	GATC	5 cut(s)	54, 83, 210, 303, 634
EaeI	YGGCCR	2 cut(s)	291, 422
EagI	CGGCCG	1 cut(s)	291
Eam1104I	CTCTTC	3 cut(s)	244, 360, 405
EarI	CTCTTC	3 cut(s)	244, 360, 405
EclXI	CGGCCG	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	371
Eco147I	AGGCCT	2 cut(s)	497, 533
Eco24I	GRGCYC	1 cut(s)	468
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	5 cut(s)	114, 238, 455, 608, 703
Eco52I	CGGCCG	1 cut(s)	291
Eco57I	CTGAAG	2 cut(s)	389, 636
EcoNI	CCTNNNNNAGG	1 cut(s)	615
EcoO109I	RGGNCCY	4 cut(s)	114, 238, 464, 465
EcoRII	CCWGG	6 cut(s)	110, 121, 190, 222, 451, 583
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	371
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	371
FaqI	GGGAC	1 cut(s)	209
FauNDI	CATATG	1 cut(s)	71
FbaI	TGATCA	1 cut(s)	634
FblI	GTMKAC	2 cut(s)	284, 395
Fnu4HI	GCNGC	6 cut(s)	324, 327, 330, 425, 627, 648
FokI	GGATG	1 cut(s)	644
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	6 cut(s)	324, 327, 330, 425, 627, 648
GluI	GCNGC	6 cut(s)	324, 327, 330, 425, 627, 648
GsaI	CCCAGC	1 cut(s)	143
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	8 cut(s)	127, 293, 424, 436, 466, 497, 533, 588
HapII	CCGG	4 cut(s)	128, 290, 294, 738
HinfI	GANTC	3 cut(s)	41, 549, 669
HpaII	CCGG	4 cut(s)	128, 290, 294, 738
HphI	GGTGA	3 cut(s)	280, 644, 734
Hpy166II	GTNNAC	3 cut(s)	285, 396, 458
Hpy188I	TCNGA	4 cut(s)	16, 40, 248, 408
Hpy8I	GTNNAC	3 cut(s)	285, 396, 458
Hpy99I	CGWCG	2 cut(s)	170, 356
HpyAV	CCTTC	3 cut(s)	403, 508, 611
HpyCH4III	ACNGT	4 cut(s)	170, 476, 734, 749
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	2 cut(s)	482, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 433, 494
HpySE526I	ACGT	1 cut(s)	354
KroI	GCCGGC	1 cut(s)	289
KroNI	GCCGGC	1 cut(s)	291
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	5 cut(s)	54, 83, 210, 303, 634
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	3 cut(s)	193, 255, 485
Lsp1109I	GCAGC	5 cut(s)	313, 316, 335, 613, 634
LweI	GCATC	3 cut(s)	268, 508, 573
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	2 cut(s)	722, 749
MalI	GATC	5 cut(s)	56, 85, 212, 305, 636
MboI	GATC	5 cut(s)	54, 83, 210, 303, 634
MboII	GAAGA	6 cut(s)	64, 146, 261, 377, 392, 395
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	3 cut(s)	179, 468, 745
MluCI	AATT	4 cut(s)	381, 418, 596, 678
MnlI	CCTC	7 cut(s)	20, 38, 44, 245, 312, 548, 568
MroNI	GCCGGC	1 cut(s)	289
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	4 cut(s)	128, 290, 294, 738
MspR9I	CCNGG	6 cut(s)	112, 123, 192, 224, 453, 585
MvaI	CCWGG	6 cut(s)	112, 123, 192, 224, 453, 585
MwoI	GCNNNNNNNGC	3 cut(s)	329, 433, 494
NaeI	GCCGGC	1 cut(s)	291
NdeI	CATATG	1 cut(s)	71
NdeII	GATC	5 cut(s)	54, 83, 210, 303, 634
NgoMIV	GCCGGC	1 cut(s)	289
NlaIV	GGNNCC	6 cut(s)	116, 240, 465, 466, 705, 736
NmeAIII	GCCGAG	1 cut(s)	598
NmuCI	GTSAC	1 cut(s)	722
PceI	AGGCCT	2 cut(s)	497, 533
PciSI	GCTCTTC	1 cut(s)	360
PdiI	GCCGGC	1 cut(s)	291
PfeI	GAWTC	3 cut(s)	41, 549, 669
PkrI	GCNGC	6 cut(s)	325, 328, 331, 426, 628, 649
PpuMI	RGGWCCY	2 cut(s)	114, 238
Psp5II	RGGWCCY	2 cut(s)	114, 238
Psp6I	CCWGG	6 cut(s)	110, 121, 190, 222, 451, 583
PspFI	CCCAGC	1 cut(s)	139
PspGI	CCWGG	6 cut(s)	110, 121, 190, 222, 451, 583
PspN4I	GGNNCC	6 cut(s)	116, 240, 465, 466, 705, 736
PspOMI	GGGCCC	1 cut(s)	464
PspPI	GGNCC	8 cut(s)	114, 125, 238, 455, 464, 465, 608, 703
PspPPI	RGGWCCY	2 cut(s)	114, 238
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	360
SatI	GCNGC	6 cut(s)	324, 327, 330, 425, 627, 648
Sau3AI	GATC	5 cut(s)	54, 83, 210, 303, 634
Sau96I	GGNCC	8 cut(s)	114, 125, 238, 455, 464, 465, 608, 703
ScrFI	CCNGG	6 cut(s)	112, 123, 192, 224, 453, 585
SduI	GDGCHC	3 cut(s)	179, 468, 745
SfaNI	GCATC	3 cut(s)	268, 508, 573
SfcI	CTRYAG	1 cut(s)	754
SinI	GGWCC	5 cut(s)	114, 238, 455, 608, 703
SmlI	CTYRAG	2 cut(s)	97, 662
SmoI	CTYRAG	2 cut(s)	97, 662
Sse9I	AATT	4 cut(s)	381, 418, 596, 678
SseBI	AGGCCT	2 cut(s)	497, 533
SsiI	CCGC	1 cut(s)	425
StuI	AGGCCT	2 cut(s)	497, 533
StyD4I	CCNGG	6 cut(s)	110, 121, 190, 222, 451, 583
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	4 cut(s)	170, 476, 734, 749
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	2 cut(s)	173, 652
TasI	AATT	4 cut(s)	381, 418, 596, 678
TauI	GCSGC	1 cut(s)	427
TfiI	GAWTC	3 cut(s)	41, 549, 669
TscAI	CASTG	3 cut(s)	565, 596, 752
TseFI	GTSAC	1 cut(s)	722
TseI	GCWGC	5 cut(s)	323, 326, 329, 626, 647
Tsp45I	GTSAC	1 cut(s)	722
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	3 cut(s)	565, 596, 752
VpaK11BI	GGWCC	5 cut(s)	114, 238, 455, 608, 703
XagI	CCTNNNNNAGG	1 cut(s)	615
XapI	RAATTY	1 cut(s)	596
XmiI	GTMKAC	2 cut(s)	284, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.