Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001207

Physical Location & Seq

Genomic Coordinates Forward (+)

27678788 .. 27679979

Gene Structure 1192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g32400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGACAAGATCATCGCCGAGTACATATGGATCTGGCATGGACCTCAGAAGCAAAGCAAGAACTCTACCGGGACCTGTTAGTGACCCCTCGAAGCTTTCCAAATGGAATTATGACGGGTCCAGCACTGGCCAAGCTCCCGGAGAAGACAGTGAAGTCATCCTATACCCTCAGGCCATTTTCAAGGACCCATTTAGAAGAGGCAACAATATCTTGGTTATGTGTGATGCTTATACTCCGGCTGGAGAACCAATTCCAACCAACAAGAGATGTGCAGCAGCAAAGATATTCAGCCATCCTGATGTTGTTGCTGAAGTGCCCTGGTATGGTCTGGAGCAAGAGTACACCTTGCTGCAGAAAGATGTGAAATGGCCCATTGGATGGCCAATTGGTGGTTATCCTGGTCCTCAGGGACCTTACTACTGCGCTGTCGGAGCTGACAAGGCATTTGGGCGTGACATTGTTGATGCTCATTACAAGGCCAGCTTGTATGCAGGCATCGACATCAGTGGCATCAACGGTGAAGTCATGCCAGGCCAGTGGGAGTTTCAAGTTGGTCCTTCAGTTGGCATCTCTGCCGGTGATGAATTATGGGTTGCTCGTTATATTTTGGAGAGGATCACGGAGATTGCTGGAGTGGTTCTTTCTTTTGATCCCAAGCCAATCCCTGGTGATTGGAACGGAGCTGGGGCTCACACAAATTACAGTACTAAATCCATGAGACACGAAGGAGGCTATGAAATCATCAAGAAAGCAATTGAGAAATTGGGACTAAGGCACAAAGAACACATTGCGGTATATGGAGAAGGCAATGAACGCCGTTTGACGGGAAAGCATGAAACAGCTGACATTAACACCTTCAAATGGGGTGTTGCAAACCGTGGTGCCTCCATTCGTGTTGGTCGTGAAACAGAGAAAGAAGGAAAGGGCTACTTTGAGGACAGGAGGCCTGCTTCGAACATGGATCCATATGTGGTAACTTCTATGATTGCTGACACCACTATTTTGTGGAGGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Gln-synt_C Gln-synt_N

Protein Analysis

339

Amino Acids

37.2

Weight (kDa)

6.41

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gln-synt_N	PF03951	35 - 79	1.8e-08	Glutamine synthetase, beta-Grasp domain
Gln-synt_C	PF00120	109 - 236	1.3e-09	Glutamine synthetase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48470 AT1G66200 AT1G66200 AT1G66200 AT3G17820 AT5G16570 AT5G16570 AT5G37600
fragaria_vesca	FvH4_1g30220 FvH4_3g32400 FvH4_4g36850 FvH4_5g17650
malus_domestica	MD09G1270600.v1.1 MD13G1006600.v1.1 MD14G1238700.v1.1 MD16G1001400.v1.1 MD17G1268700.v1.1
prunus_persica	Prupe.1G346600_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.5G236300_v2.0.a1
pyrus_communis	pycom09g18170 pycom14g19980 pycom17g26730
rosa_chinensis	RchiOBHm_Chr3g0491191 RchiOBHm_Chr4g0446601 RchiOBHm_Chr7g0178021
rosa_laevigata	RLG00000005481 RLG00000005647 RLG00000022854
rosa_multiflora	Rmu_sc0014162.1_g000003 Rmu_sc0015729.1_g000003 Rmu_sc0019011.1_g000005 Rmu_ssc0000144.1_g000004
rosa_roxburghii	Rroxscaffold_3G00275280 Rroxscaffold_5G00386990 Rroxscaffold_6G00393090
rosa_rugosa	Rorug03G0247600 Rorug04G0372700 Rorug06G0412400 Rorug06G0412400
rosa_samantha	Rh3BG333800 Rh3DG331200 Rh4AG434300 Rh4BG443500 Rh4CG460800 Rh4DG442300 Rh7AG011900 Rh7BG011300 Rh7CG011900 Rh7DG011900
rosa_wichuraiana	Rw3G026210 Rw3G026250 Rw4G037130 Rw7G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	881
AccB7I	CCANNNNNTGG	3 cut(s)	378, 389, 665
AciI	CCGC	1 cut(s)	791
AclWI	GGATC	5 cut(s)	37, 623, 644, 956, 969
AcoI	YGGCCR	2 cut(s)	127, 380
AcuI	CTGAAG	2 cut(s)	330, 543
AfaI	GTAC	3 cut(s)	22, 341, 706
AfiI	CCNNNNNNNGG	7 cut(s)	323, 378, 389, 563, 665, 823, 861
AgsI	TTSAA	3 cut(s)	181, 548, 859
AjnI	CCWGG	4 cut(s)	317, 397, 529, 664
AluBI	AGCT	6 cut(s)	94, 134, 434, 483, 683, 842
AluI	AGCT	6 cut(s)	94, 134, 434, 483, 683, 842
Alw26I	GTCTC	1 cut(s)	712
AlwI	GGATC	5 cut(s)	37, 623, 644, 956, 969
AoxI	GGCC	8 cut(s)	127, 171, 368, 380, 477, 532, 944, 1010
ApeKI	GCWGC	3 cut(s)	272, 275, 349
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
Asp700I	GAANNNNTTC	1 cut(s)	249
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	8 cut(s)	40, 71, 117, 184, 369, 401, 410, 554
AsuC2I	CCSGG	2 cut(s)	69, 138
AsuHPI	GGTGA	3 cut(s)	530, 590, 680
AsuII	TTCGAA	1 cut(s)	953
AvaII	GGWCC	7 cut(s)	40, 71, 117, 184, 401, 410, 554
AxyI	CCTNAGG	2 cut(s)	168, 405
BaeGI	GKGCMC	1 cut(s)	318
BalI	TGGCCA	2 cut(s)	129, 382
BamHI	GGATCC	1 cut(s)	961
BanI	GGYRCC	1 cut(s)	881
BanII	GRGCYC	1 cut(s)	691
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	284, 287, 336
BccI	CCATC	2 cut(s)	300, 372
BceAI	ACGGC	1 cut(s)	801
BciT130I	CCWGG	4 cut(s)	319, 399, 531, 666
BcnI	CCSGG	2 cut(s)	69, 138
BcoDI	GTCTC	1 cut(s)	712
BfmI	CTRYAG	1 cut(s)	350
BisI	GCNGC	3 cut(s)	273, 276, 350
BlsI	GCNGC	3 cut(s)	274, 277, 351
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	6 cut(s)	69, 138, 319, 399, 531, 666
Bme18I	GGWCC	7 cut(s)	40, 71, 117, 184, 401, 410, 554
BmgT120I	GGNCC	8 cut(s)	40, 71, 117, 184, 369, 401, 410, 554
BmiI	GGNNCC	6 cut(s)	72, 118, 186, 411, 883, 963
BmrFI	CCNGG	6 cut(s)	69, 138, 319, 399, 531, 666
BmsI	GCATC	5 cut(s)	214, 454, 504, 519, 576
BpiI	GAAGAC	1 cut(s)	150
BpmI	CTGGAG	3 cut(s)	261, 350, 651
Bpu14I	TTCGAA	1 cut(s)	953
BpuMI	CCSGG	2 cut(s)	69, 138
BsaJI	CCNNGG	3 cut(s)	317, 664, 877
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	7 cut(s)	323, 378, 389, 563, 665, 823, 861
Bse118I	RCCGGY	1 cut(s)	575
Bse1I	ACTGG	2 cut(s)	130, 535
Bse21I	CCTNAGG	2 cut(s)	168, 405
Bse3DI	GCAATG	2 cut(s)	786, 814
BseBI	CCWGG	4 cut(s)	319, 399, 531, 666
BseDI	CCNNGG	3 cut(s)	317, 664, 877
BseGI	GGATG	3 cut(s)	156, 292, 383
BseLI	CCNNNNNNNGG	7 cut(s)	323, 378, 389, 563, 665, 823, 861
BseMI	GCAATG	2 cut(s)	786, 814
BseMII	CTCAG	3 cut(s)	58, 182, 419
BseNI	ACTGG	2 cut(s)	130, 535
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	3 cut(s)	284, 287, 336
BseYI	CCCAGC	1 cut(s)	683
BsgI	GTGCAG	1 cut(s)	291
BshFI	GGCC	8 cut(s)	129, 173, 370, 382, 479, 534, 946, 1012
BshNI	GGYRCC	1 cut(s)	881
BsiSI	CCGG	4 cut(s)	68, 138, 236, 576
BslFI	GGGAC	3 cut(s)	84, 423, 780
BslI	CCNNNNNNNGG	7 cut(s)	323, 378, 389, 563, 665, 823, 861
BsmAI	GTCTC	1 cut(s)	712
BsmFI	GGGAC	3 cut(s)	84, 423, 780
BsnI	GGCC	8 cut(s)	129, 173, 370, 382, 479, 534, 946, 1012
Bsp119I	TTCGAA	1 cut(s)	953
Bsp1286I	GDGCHC	2 cut(s)	318, 691
Bsp143I	GATC	5 cut(s)	8, 29, 615, 649, 961
BspACI	CCGC	1 cut(s)	791
BspANI	GGCC	8 cut(s)	129, 173, 370, 382, 479, 534, 946, 1012
BspCNI	CTCAG	3 cut(s)	57, 181, 418
BspLI	GGNNCC	6 cut(s)	72, 118, 186, 411, 883, 963
BspMAI	CTGCAG	1 cut(s)	354
BspPI	GGATC	5 cut(s)	37, 623, 644, 956, 969
BspT104I	TTCGAA	1 cut(s)	953
BspT107I	GGYRCC	1 cut(s)	881
BsrDI	GCAATG	2 cut(s)	786, 814
BsrFI	RCCGGY	1 cut(s)	575
BsrI	ACTGG	2 cut(s)	130, 535
BssAI	RCCGGY	1 cut(s)	575
BssECI	CCNNGG	3 cut(s)	317, 664, 877
BssMI	GATC	5 cut(s)	8, 29, 615, 649, 961
Bst2UI	CCWGG	4 cut(s)	319, 399, 531, 666
Bst4CI	ACNGT	4 cut(s)	149, 518, 704, 878
Bst6I	CTCTTC	1 cut(s)	190
BstBI	TTCGAA	1 cut(s)	953
BstC8I	GCNNGC	3 cut(s)	481, 493, 948
BstDEI	CTNAG	4 cut(s)	44, 168, 405, 770
BstDSI	CCRYGG	1 cut(s)	877
BstF5I	GGATG	3 cut(s)	156, 292, 383
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	5 cut(s)	11, 32, 618, 652, 964
BstMAI	GTCTC	1 cut(s)	712
BstMBI	GATC	5 cut(s)	8, 29, 615, 649, 961
BstMWI	GCNNNNNNNGC	3 cut(s)	431, 440, 813
BstNI	CCWGG	4 cut(s)	319, 399, 531, 666
BstSCI	CCNGG	6 cut(s)	67, 136, 317, 397, 529, 664
BstSFI	CTRYAG	1 cut(s)	350
BstSLI	GKGCMC	1 cut(s)	318
BstV1I	GCAGC	3 cut(s)	284, 287, 336
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	2 cut(s)	29, 961
BstXI	CCANNNNNNTGG	1 cut(s)	537
BstYI	RGATCY	2 cut(s)	29, 961
Bsu36I	CCTNAGG	2 cut(s)	168, 405
BsuRI	GGCC	8 cut(s)	129, 173, 370, 382, 479, 534, 946, 1012
BtgI	CCRYGG	1 cut(s)	877
BtsCI	GGATG	3 cut(s)	156, 292, 383
BtsIMutI	CAGTG	4 cut(s)	123, 154, 511, 542
Cac8I	GCNNGC	3 cut(s)	481, 493, 948
CfoI	GCGC	1 cut(s)	425
Cfr10I	RCCGGY	1 cut(s)	575
Cfr13I	GGNCC	8 cut(s)	40, 71, 117, 184, 369, 401, 410, 554
Csp6I	GTAC	3 cut(s)	21, 340, 705
CviAII	CATG	5 cut(s)	37, 526, 715, 833, 958
CviQI	GTAC	3 cut(s)	21, 340, 705
DdeI	CTNAG	4 cut(s)	44, 168, 405, 770
DpnI	GATC	5 cut(s)	10, 31, 617, 651, 963
DpnII	GATC	5 cut(s)	8, 29, 615, 649, 961
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
EaeI	YGGCCR	2 cut(s)	127, 380
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Eco147I	AGGCCT	1 cut(s)	946
Eco24I	GRGCYC	1 cut(s)	691
Eco47I	GGWCC	7 cut(s)	40, 71, 117, 184, 401, 410, 554
Eco57I	CTGAAG	2 cut(s)	330, 543
Eco81I	CCTNAGG	2 cut(s)	168, 405
EcoO109I	RGGNCCY	3 cut(s)	71, 184, 410
EcoRII	CCWGG	4 cut(s)	317, 397, 529, 664
EcoT38I	GRGCYC	1 cut(s)	691
FaeI	CATG	5 cut(s)	40, 529, 718, 836, 961
FalI	AAGNNNNNCTT	4 cut(s)	467, 499, 914, 946
FaqI	GGGAC	3 cut(s)	84, 423, 780
FatI	CATG	5 cut(s)	36, 525, 714, 832, 957
FauNDI	CATATG	2 cut(s)	25, 967
Fnu4HI	GCNGC	3 cut(s)	273, 276, 350
FokI	GGATG	3 cut(s)	143, 279, 390
FriOI	GRGCYC	1 cut(s)	691
Fsp4HI	GCNGC	3 cut(s)	273, 276, 350
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	3 cut(s)	273, 276, 350
GsaI	CCCAGC	1 cut(s)	687
GsuI	CTGGAG	3 cut(s)	261, 350, 651
HaeIII	GGCC	8 cut(s)	129, 173, 370, 382, 479, 534, 946, 1012
HapII	CCGG	4 cut(s)	68, 138, 236, 576
HhaI	GCGC	1 cut(s)	425
Hin1II	CATG	5 cut(s)	40, 529, 718, 836, 961
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HindIII	AAGCTT	1 cut(s)	92
HpaII	CCGG	4 cut(s)	68, 138, 236, 576
HphI	GGTGA	3 cut(s)	530, 590, 680
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	2 cut(s)	47, 431
Hpy188III	TCNNGA	4 cut(s)	296, 329, 745, 902
Hpy8I	GTNNAC	1 cut(s)	342
HpyAV	CCTTC	5 cut(s)	567, 719, 797, 865, 911
HpyCH4III	ACNGT	4 cut(s)	149, 518, 704, 878
HpyCH4V	TGCA	4 cut(s)	272, 352, 491, 872
HpyF10VI	GCNNNNNNNGC	3 cut(s)	431, 440, 813
HpyF3I	CTNAG	4 cut(s)	44, 168, 405, 770
Hsp92II	CATG	5 cut(s)	40, 529, 718, 836, 961
HspAI	GCGC	1 cut(s)	423
Kzo9I	GATC	5 cut(s)	8, 29, 615, 649, 961
LmnI	GCTCC	4 cut(s)	139, 331, 431, 680
Lsp1109I	GCAGC	3 cut(s)	284, 287, 336
LweI	GCATC	5 cut(s)	214, 454, 504, 519, 576
MaeIII	GTNAC	3 cut(s)	80, 452, 973
MalI	GATC	5 cut(s)	10, 31, 617, 651, 963
MboI	GATC	5 cut(s)	8, 29, 615, 649, 961
MboII	GAAGA	2 cut(s)	155, 207
MfeI	CAATTG	2 cut(s)	384, 753
MflI	RGATCY	2 cut(s)	29, 961
MhlI	GDGCHC	2 cut(s)	318, 691
MlsI	TGGCCA	2 cut(s)	129, 382
MluCI	AATT	7 cut(s)	106, 249, 384, 584, 697, 753, 761
MluNI	TGGCCA	2 cut(s)	129, 382
MmeI	TCCRAC	2 cut(s)	278, 409
Mox20I	TGGCCA	2 cut(s)	129, 382
MroXI	GAANNNNTTC	1 cut(s)	249
MscI	TGGCCA	2 cut(s)	129, 382
MseI	TTAA	1 cut(s)	849
MslI	CAYNNNNRTG	1 cut(s)	297
Msp20I	TGGCCA	2 cut(s)	129, 382
MspA1I	CMGCKG	1 cut(s)	842
MspI	CCGG	4 cut(s)	68, 138, 236, 576
MspR9I	CCNGG	6 cut(s)	69, 138, 319, 399, 531, 666
MunI	CAATTG	2 cut(s)	384, 753
MvaI	CCWGG	4 cut(s)	319, 399, 531, 666
MwoI	GCNNNNNNNGC	3 cut(s)	431, 440, 813
NciI	CCSGG	2 cut(s)	69, 138
NdeI	CATATG	2 cut(s)	25, 967
NdeII	GATC	5 cut(s)	8, 29, 615, 649, 961
NlaIII	CATG	5 cut(s)	40, 529, 718, 836, 961
NlaIV	GGNNCC	6 cut(s)	72, 118, 186, 411, 883, 963
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	2 cut(s)	80, 452
NspV	TTCGAA	1 cut(s)	953
PceI	AGGCCT	1 cut(s)	946
PcsI	WCGNNNNNNNCGW	1 cut(s)	898
PdmI	GAANNNNTTC	1 cut(s)	249
PflMI	CCANNNNNTGG	3 cut(s)	378, 389, 665
PfoI	TCCNGGA	1 cut(s)	136
PkrI	GCNGC	3 cut(s)	274, 277, 351
PpuMI	RGGWCCY	3 cut(s)	71, 184, 410
Psp5II	RGGWCCY	3 cut(s)	71, 184, 410
Psp6I	CCWGG	4 cut(s)	317, 397, 529, 664
PspFI	CCCAGC	1 cut(s)	683
PspGI	CCWGG	4 cut(s)	317, 397, 529, 664
PspN4I	GGNNCC	6 cut(s)	72, 118, 186, 411, 883, 963
PspPI	GGNCC	8 cut(s)	40, 71, 117, 184, 369, 401, 410, 554
PspPPI	RGGWCCY	3 cut(s)	71, 184, 410
PstI	CTGCAG	1 cut(s)	354
PsuI	RGATCY	2 cut(s)	29, 961
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	3 cut(s)	22, 341, 706
RsaNI	GTAC	3 cut(s)	21, 340, 705
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	849
SatI	GCNGC	3 cut(s)	273, 276, 350
Sau3AI	GATC	5 cut(s)	8, 29, 615, 649, 961
Sau96I	GGNCC	8 cut(s)	40, 71, 117, 184, 369, 401, 410, 554
ScaI	AGTACT	1 cut(s)	706
ScrFI	CCNGG	6 cut(s)	69, 138, 319, 399, 531, 666
SduI	GDGCHC	2 cut(s)	318, 691
SfaNI	GCATC	5 cut(s)	214, 454, 504, 519, 576
SfcI	CTRYAG	1 cut(s)	350
SfuI	TTCGAA	1 cut(s)	953
SinI	GGWCC	7 cut(s)	40, 71, 117, 184, 401, 410, 554
SmiMI	CAYNNNNRTG	1 cut(s)	297
Sse9I	AATT	7 cut(s)	106, 249, 384, 584, 697, 753, 761
SseBI	AGGCCT	1 cut(s)	946
SsiI	CCGC	1 cut(s)	791
StuI	AGGCCT	1 cut(s)	946
StyD4I	CCNGG	6 cut(s)	67, 136, 317, 397, 529, 664
TaaI	ACNGT	4 cut(s)	149, 518, 704, 878
TaqI	TCGA	3 cut(s)	89, 498, 953
TasI	AATT	7 cut(s)	106, 249, 384, 584, 697, 753, 761
TatI	WGTACW	3 cut(s)	20, 339, 704
Tru1I	TTAA	1 cut(s)	849
Tru9I	TTAA	1 cut(s)	849
TscAI	CASTG	4 cut(s)	130, 154, 511, 542
TseFI	GTSAC	2 cut(s)	80, 452
TseI	GCWGC	3 cut(s)	272, 275, 349
Tsp45I	GTSAC	2 cut(s)	80, 452
TspDTI	ATGAA	4 cut(s)	597, 750, 825, 849
TspGWI	ACGGA	2 cut(s)	635, 693
TspRI	CASTG	4 cut(s)	130, 154, 511, 542
Van91I	CCANNNNNTGG	3 cut(s)	378, 389, 665
VpaK11BI	GGWCC	7 cut(s)	40, 71, 117, 184, 401, 410, 554
XmnI	GAANNNNTTC	1 cut(s)	249
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.