Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001207

Physical Location & Seq

Genomic Coordinates Reverse (-)

10093978 .. 10096546

Gene Structure 2569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTCTTTGCTCACTGATCTTATCAACCTCAACCTCTCCGATATCACTGATAAAATTATCGCTGAGTACATATGGGTTGGAGGATCTGGTATGGATGTTAGAAGTAAAGCCAGGACTCTTCCTGGACCAGTAAGTGATCCTTCAAAACTACCGAAATGGAACTATGATGGTTCTAGCACTGGCCAAGCTCCTGGAGAAGACAGTGAAGTGATCCTATACCCACAAGCAATCTTTAGGGACCCATTCAGGAGAGGAAACAACATCCTGGTGATATGTGATGCTTACACACCAGCTGGAGAGCCAATTCCAACCAACAAGAGGGCTAAGGCTGCAAAGATCTTCAACCACCCTGATGTTGTTGCTGAAGTGCCCTGGTATGGCTTAGAGCAAGAGTACACTCTGTTGCAGAAAGATGTACAGTGGCCAATTGGGTGGCCTCTGGGTGGATATCCTGGAGCACAGGGACCTTACTACTGTGGAGCTGGTGCTGATAAGGCCTTTGGCCGTGACATTGTAGATTCTCACTACAAAGCTTGTCTGTATGCCGGCATCGACATCAGTGGCATTAATGGTGAAGTTATGCCTGGTCAGTGGGAATTCCAAGTTGGACCTACAGTTGGCATATCTGCCGGAGATCAGTTATGGGCAGCGCGTTACATTTTGGAGAGGATCACTGAGATAGCTGGAGTGGTGGTTTCGTTTGATCCGAAACCAATTCCAGGTGACTGGAATGGTGCTGGTGCTCATACTAATTTCAGCACCAAGTCAATGAGAAAGGAAGGAGGCTATGAAGTGATCAAGAAGGCAATTGAGAAGCTTGGATTGAGGCACAAAGAACACATCGCCGCTTATGGCGAAGGCAATGAGCGCCGCCTTACCGGAAAACATGAAACAGCAGATATCGACACATTCATATGGGGTGTGGCGAACCGCGGAGCTTCGATAAGAGTTGGGAGGGACACTGAGAAAGAAGGAAAGGGATATTTTGAGGACCGGAGGCCAGCTTCTAACATGGATCCATATGTTGTCACCTCCATGATTGCTGAAACTACACTGCTCTGGAAACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Gln-synt_C Gln-synt_N

Protein Analysis

357

Amino Acids

39.12

Weight (kDa)

5.64

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gln-synt_N	PF03951	49 - 97	1.8e-08	Glutamine synthetase, beta-Grasp domain
Gln-synt_C	PF00120	126 - 254	7e-11	Glutamine synthetase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48470 AT1G66200 AT1G66200 AT1G66200 AT3G17820 AT5G16570 AT5G16570 AT5G37600
fragaria_vesca	FvH4_1g30220 FvH4_3g32400 FvH4_4g36850 FvH4_5g17650
malus_domestica	MD09G1270600.v1.1 MD13G1006600.v1.1 MD14G1238700.v1.1 MD16G1001400.v1.1 MD17G1268700.v1.1
prunus_persica	Prupe.1G346600_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.3G166500_v2.0.a1 Prupe.5G236300_v2.0.a1
pyrus_communis	pycom09g18170 pycom14g19980 pycom17g26730
rosa_chinensis	RchiOBHm_Chr3g0491191 RchiOBHm_Chr4g0446601 RchiOBHm_Chr7g0178021
rosa_laevigata	RLG00000005481 RLG00000005647 RLG00000022854
rosa_multiflora	Rmu_sc0014162.1_g000003 Rmu_sc0015729.1_g000003 Rmu_sc0019011.1_g000005 Rmu_ssc0000144.1_g000004
rosa_roxburghii	Rroxscaffold_3G00275280 Rroxscaffold_5G00386990 Rroxscaffold_6G00393090
rosa_rugosa	Rorug03G0247600 Rorug04G0372700 Rorug06G0412400 Rorug06G0412400
rosa_samantha	Rh3BG333800 Rh3DG331200 Rh4AG434300 Rh4BG443500 Rh4CG460800 Rh4DG442300 Rh7AG011900 Rh7BG011300 Rh7CG011900 Rh7DG011900
rosa_wichuraiana	Rw3G026210 Rw3G026250 Rw4G037130 Rw7G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	652, 933
AciI	CCGC	4 cut(s)	846, 871, 931, 933
AclWI	GGATC	7 cut(s)	91, 131, 205, 677, 698, 1010, 1023
AcoI	YGGCCR	3 cut(s)	181, 422, 502
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	3 cut(s)	68, 395, 417
AfiI	CCNNNNNNNGG	5 cut(s)	318, 377, 443, 617, 719
AgsI	TTSAA	2 cut(s)	144, 343
AjnI	CCWGG	8 cut(s)	110, 121, 190, 264, 371, 451, 583, 718
AjuI	GAANNNNNNNTTGG	2 cut(s)	588, 620
AluBI	AGCT	8 cut(s)	188, 293, 482, 533, 683, 817, 938, 1004
AluI	AGCT	8 cut(s)	188, 293, 482, 533, 683, 817, 938, 1004
Alw21I	GWGCWC	2 cut(s)	460, 745
AlwI	GGATC	7 cut(s)	91, 131, 205, 677, 698, 1010, 1023
AoxI	GGCC	6 cut(s)	181, 422, 434, 495, 502, 998
ApeKI	GCWGC	2 cut(s)	329, 647
ApoI	RAATTY	1 cut(s)	596
AseI	ATTAAT	1 cut(s)	567
AspLEI	GCGC	2 cut(s)	652, 870
AspS9I	GGNCC	5 cut(s)	125, 238, 464, 608, 991
AsuHPI	GGTGA	4 cut(s)	280, 584, 734, 1021
AvaII	GGWCC	5 cut(s)	125, 238, 464, 608, 991
BaeGI	GKGCMC	1 cut(s)	372
BalI	TGGCCA	2 cut(s)	183, 424
BamHI	GGATCC	1 cut(s)	1015
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	2 cut(s)	460, 745
BbvI	GCAGC	2 cut(s)	316, 659
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	1 cut(s)	489
BciT130I	CCWGG	8 cut(s)	112, 123, 192, 266, 373, 453, 585, 720
BclI	TGATCA	1 cut(s)	795
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	612
BfoI	RGCGCY	1 cut(s)	871
BglII	AGATCT	1 cut(s)	336
BisI	GCNGC	4 cut(s)	330, 648, 846, 871
BlsI	GCNGC	4 cut(s)	331, 649, 847, 872
Bme1390I	CCNGG	8 cut(s)	112, 123, 192, 266, 373, 453, 585, 720
Bme18I	GGWCC	5 cut(s)	125, 238, 464, 608, 991
BmgT120I	GGNCC	5 cut(s)	125, 238, 464, 608, 991
BmiI	GGNNCC	4 cut(s)	239, 240, 465, 1017
BmrFI	CCNGG	8 cut(s)	112, 123, 192, 266, 373, 453, 585, 720
BmsI	GCATC	2 cut(s)	268, 558
BpiI	GAAGAC	1 cut(s)	204
BpmI	CTGGAG	4 cut(s)	213, 315, 474, 705
Bpu10I	CCTNAGC	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	371, 931
BsaWI	WCCGGW	2 cut(s)	878, 993
BsaXI	ACNNNNNCTCC	2 cut(s)	678, 708
Bsc4I	CCNNNNNNNGG	5 cut(s)	318, 377, 443, 617, 719
Bse118I	RCCGGY	1 cut(s)	545
Bse1I	ACTGG	3 cut(s)	128, 184, 731
Bse3DI	GCAATG	1 cut(s)	868
BseBI	CCWGG	8 cut(s)	112, 123, 192, 266, 373, 453, 585, 720
BseDI	CCNNGG	2 cut(s)	371, 931
BseGI	GGATG	2 cut(s)	100, 261
BseLI	CCNNNNNNNGG	5 cut(s)	318, 377, 443, 617, 719
BseMI	GCAATG	1 cut(s)	868
BseMII	CTCAG	3 cut(s)	54, 666, 954
BseNI	ACTGG	3 cut(s)	128, 184, 731
BseSI	GKGCMC	1 cut(s)	372
BseXI	GCAGC	2 cut(s)	316, 659
Bsh1236I	CGCG	2 cut(s)	652, 933
BshFI	GGCC	6 cut(s)	183, 424, 436, 497, 504, 1000
BsiHKAI	GWGCWC	2 cut(s)	460, 745
BsiSI	CCGG	4 cut(s)	546, 630, 879, 994
BslFI	GGGAC	3 cut(s)	251, 477, 971
BslI	CCNNNNNNNGG	5 cut(s)	318, 377, 443, 617, 719
BsmFI	GGGAC	3 cut(s)	251, 477, 971
BsnI	GGCC	6 cut(s)	183, 424, 436, 497, 504, 1000
Bsp1286I	GDGCHC	3 cut(s)	372, 460, 745
Bsp1407I	TGTACA	1 cut(s)	415
BspACI	CCGC	4 cut(s)	846, 871, 931, 933
BspANI	GGCC	6 cut(s)	183, 424, 436, 497, 504, 1000
BspCNI	CTCAG	3 cut(s)	55, 667, 955
BspFNI	CGCG	2 cut(s)	652, 933
BspLI	GGNNCC	4 cut(s)	239, 240, 465, 1017
BspPI	GGATC	7 cut(s)	91, 131, 205, 677, 698, 1010, 1023
BsrDI	GCAATG	1 cut(s)	868
BsrFI	RCCGGY	1 cut(s)	545
BsrGI	TGTACA	1 cut(s)	415
BsrI	ACTGG	3 cut(s)	128, 184, 731
BssAI	RCCGGY	1 cut(s)	545
BssECI	CCNNGG	2 cut(s)	371, 931
Bst2UI	CCWGG	8 cut(s)	112, 123, 192, 266, 373, 453, 585, 720
Bst4CI	ACNGT	4 cut(s)	203, 420, 476, 616
Bst6I	CTCTTC	1 cut(s)	123
BstAUI	TGTACA	1 cut(s)	415
BstC8I	GCNNGC	2 cut(s)	547, 1002
BstDEI	CTNAG	5 cut(s)	63, 324, 382, 675, 963
BstDSI	CCRYGG	1 cut(s)	931
BstF5I	GGATG	2 cut(s)	100, 261
BstFNI	CGCG	2 cut(s)	652, 933
BstH2I	RGCGCY	1 cut(s)	871
BstHHI	GCGC	2 cut(s)	652, 870
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 494, 867
BstNI	CCWGG	8 cut(s)	112, 123, 192, 266, 373, 453, 585, 720
BstSCI	CCNGG	8 cut(s)	110, 121, 190, 264, 371, 451, 583, 718
BstSFI	CTRYAG	1 cut(s)	612
BstSLI	GKGCMC	1 cut(s)	372
BstUI	CGCG	2 cut(s)	652, 933
BstV1I	GCAGC	2 cut(s)	316, 659
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	3 cut(s)	83, 336, 1015
BstXI	CCANNNNNNTGG	3 cut(s)	191, 432, 726
BstYI	RGATCY	3 cut(s)	83, 336, 1015
BsuRI	GGCC	6 cut(s)	183, 424, 436, 497, 504, 1000
BtgI	CCRYGG	1 cut(s)	931
BtgZI	GCGATG	1 cut(s)	826
BtsCI	GGATG	2 cut(s)	100, 261
BtsI	GCAGTG	1 cut(s)	1052
Cac8I	GCNNGC	2 cut(s)	547, 1002
CfoI	GCGC	2 cut(s)	652, 870
Cfr10I	RCCGGY	1 cut(s)	545
Cfr13I	GGNCC	5 cut(s)	125, 238, 464, 608, 991
Cfr42I	CCGCGG	1 cut(s)	934
Csp6I	GTAC	3 cut(s)	67, 394, 416
CviAII	CATG	3 cut(s)	887, 1012, 1036
CviQI	GTAC	3 cut(s)	67, 394, 416
DdeI	CTNAG	5 cut(s)	63, 324, 382, 675, 963
EaeI	YGGCCR	3 cut(s)	181, 422, 502
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco147I	AGGCCT	1 cut(s)	497
Eco32I	GATATC	3 cut(s)	43, 449, 901
Eco47I	GGWCC	5 cut(s)	125, 238, 464, 608, 991
Eco57I	CTGAAG	1 cut(s)	384
EcoO109I	RGGNCCY	2 cut(s)	238, 464
EcoRI	GAATTC	1 cut(s)	596
EcoRII	CCWGG	8 cut(s)	110, 121, 190, 264, 371, 451, 583, 718
EcoRV	GATATC	3 cut(s)	43, 449, 901
FaeI	CATG	3 cut(s)	890, 1015, 1039
FalI	AAGNNNNNCTT	2 cut(s)	124, 156
FaqI	GGGAC	3 cut(s)	251, 477, 971
FatI	CATG	3 cut(s)	886, 1011, 1035
FauNDI	CATATG	3 cut(s)	71, 914, 1021
FbaI	TGATCA	1 cut(s)	795
Fnu4HI	GCNGC	4 cut(s)	330, 648, 846, 871
FokI	GGATG	2 cut(s)	107, 248
Fsp4HI	GCNGC	4 cut(s)	330, 648, 846, 871
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	2 cut(s)	651, 869
GluI	GCNGC	4 cut(s)	330, 648, 846, 871
GsuI	CTGGAG	4 cut(s)	213, 315, 474, 705
HaeII	RGCGCY	1 cut(s)	871
HaeIII	GGCC	6 cut(s)	183, 424, 436, 497, 504, 1000
HapII	CCGG	4 cut(s)	546, 630, 879, 994
HhaI	GCGC	2 cut(s)	652, 870
Hin1II	CATG	3 cut(s)	890, 1015, 1039
Hin6I	GCGC	2 cut(s)	650, 868
HinP1I	GCGC	2 cut(s)	650, 868
HindIII	AAGCTT	2 cut(s)	531, 815
HinfI	GANTC	2 cut(s)	115, 518
HpaII	CCGG	4 cut(s)	546, 630, 879, 994
HphI	GGTGA	4 cut(s)	280, 584, 734, 1021
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	2 cut(s)	40, 708
Hpy188III	TCNNGA	3 cut(s)	247, 799, 1060
Hpy8I	GTNNAC	1 cut(s)	396
HpyAV	CCTTC	5 cut(s)	150, 773, 796, 851, 965
HpyCH4III	ACNGT	4 cut(s)	203, 420, 476, 616
HpyCH4V	TGCA	2 cut(s)	332, 406
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 494, 867
HpyF3I	CTNAG	5 cut(s)	63, 324, 382, 675, 963
Hsp92II	CATG	3 cut(s)	890, 1015, 1039
HspAI	GCGC	2 cut(s)	650, 868
KflI	GGGWCCC	1 cut(s)	238
KroI	GCCGGC	1 cut(s)	545
KroNI	GCCGGC	1 cut(s)	547
Ksp22I	TGATCA	1 cut(s)	795
KspI	CCGCGG	1 cut(s)	934
LmnI	GCTCC	4 cut(s)	193, 455, 479, 935
Lsp1109I	GCAGC	2 cut(s)	316, 659
LweI	GCATC	2 cut(s)	268, 558
MaeI	CTAG	1 cut(s)	174
MaeIII	GTNAC	4 cut(s)	506, 653, 722, 1027
MboII	GAAGA	3 cut(s)	110, 209, 331
MfeI	CAATTG	2 cut(s)	426, 807
MflI	RGATCY	3 cut(s)	83, 336, 1015
MhlI	GDGCHC	3 cut(s)	372, 460, 745
MlsI	TGGCCA	2 cut(s)	183, 424
MluCI	AATT	7 cut(s)	54, 303, 426, 596, 714, 751, 807
MluNI	TGGCCA	2 cut(s)	183, 424
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	3 cut(s)	58, 332, 586
Mox20I	TGGCCA	2 cut(s)	183, 424
MroNI	GCCGGC	1 cut(s)	545
MscI	TGGCCA	2 cut(s)	183, 424
MseI	TTAA	1 cut(s)	567
MslI	CAYNNNNRTG	4 cut(s)	266, 351, 913, 1034
Msp20I	TGGCCA	2 cut(s)	183, 424
MspA1I	CMGCKG	2 cut(s)	293, 933
MspI	CCGG	4 cut(s)	546, 630, 879, 994
MspR9I	CCNGG	8 cut(s)	112, 123, 192, 266, 373, 453, 585, 720
MunI	CAATTG	2 cut(s)	426, 807
MvaI	CCWGG	8 cut(s)	112, 123, 192, 266, 373, 453, 585, 720
MvnI	CGCG	2 cut(s)	652, 933
MwoI	GCNNNNNNNGC	3 cut(s)	329, 494, 867
NaeI	GCCGGC	1 cut(s)	547
NdeI	CATATG	3 cut(s)	71, 914, 1021
NgoMIV	GCCGGC	1 cut(s)	545
NlaIII	CATG	3 cut(s)	890, 1015, 1039
NlaIV	GGNNCC	4 cut(s)	239, 240, 465, 1017
NmuCI	GTSAC	3 cut(s)	506, 722, 1027
PceI	AGGCCT	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	1 cut(s)	704
PdiI	GCCGGC	1 cut(s)	547
PfeI	GAWTC	1 cut(s)	518
PfoI	TCCNGGA	3 cut(s)	121, 190, 451
PkrI	GCNGC	4 cut(s)	331, 649, 847, 872
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PpuMI	RGGWCCY	2 cut(s)	238, 464
PshBI	ATTAAT	1 cut(s)	567
Psp5II	RGGWCCY	2 cut(s)	238, 464
Psp6I	CCWGG	8 cut(s)	110, 121, 190, 264, 371, 451, 583, 718
PspGI	CCWGG	8 cut(s)	110, 121, 190, 264, 371, 451, 583, 718
PspN4I	GGNNCC	4 cut(s)	239, 240, 465, 1017
PspPI	GGNCC	5 cut(s)	125, 238, 464, 608, 991
PspPPI	RGGWCCY	2 cut(s)	238, 464
PsuI	RGATCY	3 cut(s)	83, 336, 1015
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	3 cut(s)	68, 395, 417
RsaNI	GTAC	3 cut(s)	67, 394, 416
RseI	CAYNNNNRTG	4 cut(s)	266, 351, 913, 1034
SacII	CCGCGG	1 cut(s)	934
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	4 cut(s)	330, 648, 846, 871
Sau96I	GGNCC	5 cut(s)	125, 238, 464, 608, 991
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	8 cut(s)	112, 123, 192, 266, 373, 453, 585, 720
SduI	GDGCHC	3 cut(s)	372, 460, 745
SfaNI	GCATC	2 cut(s)	268, 558
SfcI	CTRYAG	1 cut(s)	612
Sfr303I	CCGCGG	1 cut(s)	934
SgrBI	CCGCGG	1 cut(s)	934
SinI	GGWCC	5 cut(s)	125, 238, 464, 608, 991
SmiMI	CAYNNNNRTG	4 cut(s)	266, 351, 913, 1034
Sse9I	AATT	7 cut(s)	54, 303, 426, 596, 714, 751, 807
SseBI	AGGCCT	1 cut(s)	497
SsiI	CCGC	4 cut(s)	846, 871, 931, 933
SspMI	CTAG	1 cut(s)	174
StuI	AGGCCT	1 cut(s)	497
StyD4I	CCNGG	8 cut(s)	110, 121, 190, 264, 371, 451, 583, 718
TaaI	ACNGT	4 cut(s)	203, 420, 476, 616
TaqI	TCGA	3 cut(s)	552, 903, 941
TasI	AATT	7 cut(s)	54, 303, 426, 596, 714, 751, 807
TatI	WGTACW	3 cut(s)	66, 393, 415
TauI	GCSGC	2 cut(s)	848, 873
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TseFI	GTSAC	3 cut(s)	506, 722, 1027
TseI	GCWGC	2 cut(s)	329, 647
Tsp45I	GTSAC	3 cut(s)	506, 722, 1027
TspDTI	ATGAA	3 cut(s)	804, 901, 903
VpaK11BI	GGWCC	5 cut(s)	125, 238, 464, 608, 991
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	1 cut(s)	596
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.