pycom09g18170

glutamine synthetase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
18761154 .. 18763632
2479 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g18170.9

Sequence Viewer

Length: 1104 bp
ATGTCGCTAGTCTCAGATCTCATCAACCTCGACCTCTCAGACAGCACTAAGAAGATCATCGCAGAGTACATATGGATTGGTGGATCTGGAATGGATATCAGAAGCAAAGCAAGGGTAATTAATCTTCTCCTTCTCTTTGATCTTGTTATCTTGATTGGACCAGTGAGTGATCCTTCAAAGCTTCCCAAGTGGAATTATGATGGTTCCAGCACAAATCAAGCTCCTGGAGAAGATAGTGAAGTTATTTTATACCCTCAAGCCATTTTCAAGGATCCATTCAGGAGAGGCAACAACATTTTGGTGATATGCGATACCTACACACCCGCTGGGGAACCAATTCCAACTAACAAGAGGGCTGCAGCTGCAAAGATTTTCAGCCATCCTGATGTTGTTGCTGAAGTAACCTGGTATGGAATTGAACAGGAGTACACCTTGCTGCAGAAAGATGTCAAATGGCCACTCGGCTGGCCCGTTGGTGGTTTCCCAGGCCCTCAGGGACCGTACTATTGTGCGGCTGGCGCTGACAAGGCCTTCGGGCGCGACATTGTTGACGCACACTACAAGGCCTGCCTTTATGCTGGCATCAACATTAGTGGAATCAACGGTGAAGTGATGCCTGGCCAGTGGGAATTTCAAGTTGGCCCTTCTGTCGGCATATCCGCTGGAGATGAACTGTGGGCTGCTCGTTATATTTTGGAGAGGATCACCGAGATTGCTGGGGTGGTTCTGTCATTTGATCCCAAGCCAATCCAGGGTGATTGGAACGGGGCTGGTGCTCACACAAACTACAGCACCAAGTCCATGAGAGAAGATGGAGGCTATGAAGTTATCAAGAAGGCAATTAACAAGCTGGGACTCAGGCACAAGGAGCACATTGCTGCCTATGGAGAAGGCAATGAACGCCGTTTGACAGGAAGGCATGAAACAGCTGATATCAACACATTCAAATGGGGTGTTGCCAACCGCGGTGCTTCTATCCGTGTTGGTAGAGACACAGAACAAGCTGGCAAGGGCTATTTCGAGGACAGGAGGCCTGCATCGAACATGGATCCATATGTTGTCACATCGATGGTTGCAGAAACCACCCTTCTGTTGAAGCCATAA

Protein Analysis

368

Amino Acids

40.28

Weight (kDa)

5.78

Isoelectric Point (pI)

35.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 540, 966
AciI CCGC 5 cut(s) 324, 512, 660, 964, 966
AclWI GGATC 8 cut(s) 91, 164, 266, 279, 710, 731, 1043, 1056
AcoI YGGCCR 2 cut(s) 455, 619
AcsI RAATTY 1 cut(s) 629
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 3 cut(s) 68, 428, 503
AfiI CCNNNNNNNGG 3 cut(s) 476, 650, 752
AgsI TTSAA 6 cut(s) 177, 268, 419, 635, 946, 1096
AjnI CCWGG 5 cut(s) 223, 404, 484, 616, 750
AjuI GAANNNNNNNTTGG 2 cut(s) 621, 653
AluBI AGCT 6 cut(s) 181, 221, 362, 850, 929, 1004
AluI AGCT 6 cut(s) 181, 221, 362, 850, 929, 1004
Alw21I GWGCWC 2 cut(s) 778, 873
Alw26I GTCTC 2 cut(s) 16, 984
AlwI GGATC 8 cut(s) 91, 164, 266, 279, 710, 731, 1043, 1056
AoxI GGCC 8 cut(s) 455, 467, 487, 528, 564, 619, 640, 1031
ApeKI GCWGC 6 cut(s) 356, 359, 362, 436, 680, 878
ApoI RAATTY 1 cut(s) 629
ArsI GACNNNNNNTTYG 2 cut(s) 515, 547
AseI ATTAAT 1 cut(s) 120
Asp700I GAANNNNTTC 1 cut(s) 336
AspLEI GCGC 2 cut(s) 521, 540
AspS9I GGNCC 5 cut(s) 158, 468, 488, 497, 641
AsuHPI GGTGA 4 cut(s) 313, 617, 697, 767
AvaII GGWCC 2 cut(s) 158, 497
AxyI CCTNAGG 1 cut(s) 492
BalI TGGCCA 2 cut(s) 457, 621
BamHI GGATCC 2 cut(s) 271, 1048
BarI GAAGNNNNNNTAC 2 cut(s) 108, 140
Bbv12I GWGCWC 2 cut(s) 778, 873
BbvI GCAGC 6 cut(s) 343, 349, 371, 423, 667, 865
BccI CCATC 4 cut(s) 194, 387, 806, 1063
BceAI ACGGC 1 cut(s) 888
BciT130I CCWGG 5 cut(s) 225, 406, 486, 618, 752
BcoDI GTCTC 2 cut(s) 16, 984
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 3 cut(s) 357, 437, 787
BfoI RGCGCY 1 cut(s) 522
BglII AGATCT 1 cut(s) 16
BisI GCNGC 7 cut(s) 357, 360, 363, 437, 513, 681, 879
BlsI GCNGC 7 cut(s) 358, 361, 364, 438, 514, 682, 880
Bme1390I CCNGG 5 cut(s) 225, 406, 486, 618, 752
Bme18I GGWCC 2 cut(s) 158, 497
BmgT120I GGNCC 5 cut(s) 158, 468, 488, 497, 641
BmiI GGNNCC 5 cut(s) 205, 273, 333, 498, 1050
BmrFI CCNGG 5 cut(s) 225, 406, 486, 618, 752
BmsI GCATC 3 cut(s) 591, 603, 1046
BpmI CTGGAG 2 cut(s) 246, 684
BpuEI CTTGAG 1 cut(s) 240
Bsa29I ATCGAT 1 cut(s) 1067
BsaJI CCNNGG 3 cut(s) 484, 751, 964
Bsc4I CCNNNNNNNGG 3 cut(s) 476, 650, 752
Bse1I ACTGG 2 cut(s) 161, 622
Bse21I CCTNAGG 1 cut(s) 492
Bse3DI GCAATG 2 cut(s) 873, 901
BseBI CCWGG 5 cut(s) 225, 406, 486, 618, 752
BseCI ATCGAT 1 cut(s) 1067
BseDI CCNNGG 3 cut(s) 484, 751, 964
BseGI GGATG 1 cut(s) 379
BseLI CCNNNNNNNGG 3 cut(s) 476, 650, 752
BseMI GCAATG 2 cut(s) 873, 901
BseMII CTCAG 4 cut(s) 27, 51, 506, 871
BseNI ACTGG 2 cut(s) 161, 622
BseXI GCAGC 6 cut(s) 343, 349, 371, 423, 667, 865
BseYI CCCAGC 3 cut(s) 326, 716, 850
Bsh1236I CGCG 2 cut(s) 540, 966
BshFI GGCC 8 cut(s) 457, 469, 489, 530, 566, 621, 642, 1033
BshVI ATCGAT 1 cut(s) 1067
BsiHKAI GWGCWC 2 cut(s) 778, 873
BslFI GGGAC 2 cut(s) 510, 867
BslI CCNNNNNNNGG 3 cut(s) 476, 650, 752
BsmAI GTCTC 2 cut(s) 16, 984
BsmFI GGGAC 2 cut(s) 510, 867
BsnI GGCC 8 cut(s) 457, 469, 489, 530, 566, 621, 642, 1033
Bsp1286I GDGCHC 2 cut(s) 778, 873
Bsp143I GATC 9 cut(s) 16, 54, 83, 139, 169, 271, 702, 736, 1048
BspACI CCGC 5 cut(s) 324, 512, 660, 964, 966
BspANI GGCC 8 cut(s) 457, 469, 489, 530, 566, 621, 642, 1033
BspCNI CTCAG 4 cut(s) 26, 50, 505, 870
BspDI ATCGAT 1 cut(s) 1067
BspFNI CGCG 2 cut(s) 540, 966
BspLI GGNNCC 5 cut(s) 205, 273, 333, 498, 1050
BspMAI CTGCAG 2 cut(s) 361, 441
BspPI GGATC 8 cut(s) 91, 164, 266, 279, 710, 731, 1043, 1056
BsrDI GCAATG 2 cut(s) 873, 901
BsrI ACTGG 2 cut(s) 161, 622
BssECI CCNNGG 3 cut(s) 484, 751, 964
BssMI GATC 9 cut(s) 16, 54, 83, 139, 169, 271, 702, 736, 1048
Bst2UI CCWGG 5 cut(s) 225, 406, 486, 618, 752
Bst4CI ACNGT 3 cut(s) 501, 605, 675
BstC8I GCNNGC 6 cut(s) 467, 517, 568, 580, 1006, 1035
BstDEI CTNAG 5 cut(s) 13, 37, 48, 492, 857
BstDSI CCRYGG 1 cut(s) 964
BstF5I GGATG 1 cut(s) 379
BstFNI CGCG 2 cut(s) 540, 966
BstH2I RGCGCY 1 cut(s) 522
BstHHI GCGC 2 cut(s) 521, 540
BstKTI GATC 9 cut(s) 19, 57, 86, 142, 172, 274, 705, 739, 1051
BstMAI GTCTC 2 cut(s) 16, 984
BstMBI GATC 9 cut(s) 16, 54, 83, 139, 169, 271, 702, 736, 1048
BstMWI GCNNNNNNNGC 5 cut(s) 362, 518, 527, 868, 900
BstNI CCWGG 5 cut(s) 225, 406, 486, 618, 752
BstSCI CCNGG 5 cut(s) 223, 404, 484, 616, 750
BstSFI CTRYAG 3 cut(s) 357, 437, 787
BstUI CGCG 2 cut(s) 540, 966
BstV1I GCAGC 6 cut(s) 343, 349, 371, 423, 667, 865
BstX2I RGATCY 4 cut(s) 16, 83, 271, 1048
BstXI CCANNNNNNTGG 1 cut(s) 465
BstYI RGATCY 4 cut(s) 16, 83, 271, 1048
Bsu15I ATCGAT 1 cut(s) 1067
Bsu36I CCTNAGG 1 cut(s) 492
BsuRI GGCC 8 cut(s) 457, 469, 489, 530, 566, 621, 642, 1033
BsuTUI ATCGAT 1 cut(s) 1067
BtgI CCRYGG 1 cut(s) 964
BtgZI GCGATG 1 cut(s) 43
BtsCI GGATG 1 cut(s) 379
BtsIMutI CAGTG 2 cut(s) 168, 629
Cac8I GCNNGC 6 cut(s) 467, 517, 568, 580, 1006, 1035
CfoI GCGC 2 cut(s) 521, 540
Cfr13I GGNCC 5 cut(s) 158, 468, 488, 497, 641
Cfr42I CCGCGG 1 cut(s) 967
ClaI ATCGAT 1 cut(s) 1067
CseI GACGC 1 cut(s) 560
CsiI ACCWGGT 1 cut(s) 404
Csp6I GTAC 3 cut(s) 67, 427, 502
CspCI CAANNNNNGTGG 2 cut(s) 574, 609
CviAII CATG 3 cut(s) 802, 920, 1045
CviQI GTAC 3 cut(s) 67, 427, 502
DdeI CTNAG 5 cut(s) 13, 37, 48, 492, 857
DpnI GATC 9 cut(s) 18, 56, 85, 141, 171, 273, 704, 738, 1050
DpnII GATC 9 cut(s) 16, 54, 83, 139, 169, 271, 702, 736, 1048
EaeI YGGCCR 2 cut(s) 455, 619
Eco147I AGGCCT 3 cut(s) 530, 566, 1033
Eco32I GATATC 2 cut(s) 97, 934
Eco47I GGWCC 2 cut(s) 158, 497
Eco57I CTGAAG 1 cut(s) 417
Eco81I CCTNAGG 1 cut(s) 492
EcoO109I RGGNCCY 1 cut(s) 488
EcoRII CCWGG 5 cut(s) 223, 404, 484, 616, 750
EcoRV GATATC 2 cut(s) 97, 934
FaeI CATG 3 cut(s) 805, 923, 1048
FaqI GGGAC 2 cut(s) 510, 867
FatI CATG 3 cut(s) 801, 919, 1044
FauI CCCGC 1 cut(s) 331
FauNDI CATATG 2 cut(s) 71, 1054
Fnu4HI GCNGC 7 cut(s) 357, 360, 363, 437, 513, 681, 879
FokI GGATG 1 cut(s) 366
Fsp4HI GCNGC 7 cut(s) 357, 360, 363, 437, 513, 681, 879
FspBI CTAG 1 cut(s) 8
GlaI GCGC 2 cut(s) 520, 539
GluI GCNGC 7 cut(s) 357, 360, 363, 437, 513, 681, 879
GsaI CCCAGC 3 cut(s) 330, 720, 854
GsuI CTGGAG 2 cut(s) 246, 684
HaeII RGCGCY 1 cut(s) 522
HaeIII GGCC 8 cut(s) 457, 469, 489, 530, 566, 621, 642, 1033
HgaI GACGC 1 cut(s) 560
HhaI GCGC 2 cut(s) 521, 540
Hin1II CATG 3 cut(s) 805, 923, 1048
Hin6I GCGC 2 cut(s) 519, 538
HinP1I GCGC 2 cut(s) 519, 538
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 2 cut(s) 597, 855
HphI GGTGA 4 cut(s) 313, 617, 697, 767
Hpy166II GTNNAC 2 cut(s) 429, 550
Hpy188I TCNGA 3 cut(s) 16, 40, 101
Hpy188III TCNNGA 5 cut(s) 87, 151, 280, 383, 832
Hpy8I GTNNAC 2 cut(s) 429, 550
HpyAV CCTTC 8 cut(s) 140, 183, 541, 654, 829, 884, 909, 1097
HpyCH4III ACNGT 3 cut(s) 501, 605, 675
HpyCH4V TGCA 5 cut(s) 359, 365, 439, 1037, 1076
HpyF10VI GCNNNNNNNGC 5 cut(s) 362, 518, 527, 868, 900
HpyF3I CTNAG 5 cut(s) 13, 37, 48, 492, 857
Hsp92II CATG 3 cut(s) 805, 923, 1048
HspAI GCGC 2 cut(s) 519, 538
KspI CCGCGG 1 cut(s) 967
Kzo9I GATC 9 cut(s) 16, 54, 83, 139, 169, 271, 702, 736, 1048
LmnI GCTCC 2 cut(s) 226, 868
Lsp1109I GCAGC 6 cut(s) 343, 349, 371, 423, 667, 865
LweI GCATC 3 cut(s) 591, 603, 1046
MabI ACCWGGT 1 cut(s) 404
MaeI CTAG 1 cut(s) 8
MaeIII GTNAC 2 cut(s) 400, 1060
MalI GATC 9 cut(s) 18, 56, 85, 141, 171, 273, 704, 738, 1050
MboI GATC 9 cut(s) 16, 54, 83, 139, 169, 271, 702, 736, 1048
MboII GAAGA 4 cut(s) 64, 116, 242, 821
MflI RGATCY 4 cut(s) 16, 83, 271, 1048
MhlI GDGCHC 2 cut(s) 778, 873
MlsI TGGCCA 2 cut(s) 457, 621
MluCI AATT 6 cut(s) 117, 193, 336, 414, 629, 840
MluNI TGGCCA 2 cut(s) 457, 621
MlyI GAGTC 1 cut(s) 849
MmeI TCCRAC 1 cut(s) 365
Mox20I TGGCCA 2 cut(s) 457, 621
MroXI GAANNNNTTC 1 cut(s) 336
MscI TGGCCA 2 cut(s) 457, 621
MseI TTAA 2 cut(s) 120, 843
MslI CAYNNNNRTG 4 cut(s) 299, 384, 946, 1067
Msp20I TGGCCA 2 cut(s) 457, 621
MspA1I CMGCKG 5 cut(s) 326, 362, 662, 929, 966
MspR9I CCNGG 5 cut(s) 225, 406, 486, 618, 752
MvaI CCWGG 5 cut(s) 225, 406, 486, 618, 752
MvnI CGCG 2 cut(s) 540, 966
MwoI GCNNNNNNNGC 5 cut(s) 362, 518, 527, 868, 900
NdeI CATATG 2 cut(s) 71, 1054
NdeII GATC 9 cut(s) 16, 54, 83, 139, 169, 271, 702, 736, 1048
NlaIII CATG 3 cut(s) 805, 923, 1048
NlaIV GGNNCC 5 cut(s) 205, 273, 333, 498, 1050
NmeAIII GCCGAG 1 cut(s) 441
NmuCI GTSAC 1 cut(s) 1060
PceI AGGCCT 3 cut(s) 530, 566, 1033
PcsI WCGNNNNNNNCGW 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 597
PfoI TCCNGGA 1 cut(s) 223
PkrI GCNGC 7 cut(s) 358, 361, 364, 438, 514, 682, 880
PleI GAGTC 1 cut(s) 849
PpsI GAGTC 1 cut(s) 849
PshBI ATTAAT 1 cut(s) 120
Psp6I CCWGG 5 cut(s) 223, 404, 484, 616, 750
PspFI CCCAGC 3 cut(s) 326, 716, 850
PspGI CCWGG 5 cut(s) 223, 404, 484, 616, 750
PspN4I GGNNCC 5 cut(s) 205, 273, 333, 498, 1050
PspPI GGNCC 5 cut(s) 158, 468, 488, 497, 641
PstI CTGCAG 2 cut(s) 361, 441
PsuI RGATCY 4 cut(s) 16, 83, 271, 1048
PvuII CAGCTG 2 cut(s) 362, 929
RsaI GTAC 3 cut(s) 68, 428, 503
RsaNI GTAC 3 cut(s) 67, 427, 502
RseI CAYNNNNRTG 4 cut(s) 299, 384, 946, 1067
SacII CCGCGG 1 cut(s) 967
SaqAI TTAA 2 cut(s) 120, 843
SatI GCNGC 7 cut(s) 357, 360, 363, 437, 513, 681, 879
Sau3AI GATC 9 cut(s) 16, 54, 83, 139, 169, 271, 702, 736, 1048
Sau96I GGNCC 5 cut(s) 158, 468, 488, 497, 641
SchI GAGTC 1 cut(s) 849
ScrFI CCNGG 5 cut(s) 225, 406, 486, 618, 752
SduI GDGCHC 2 cut(s) 778, 873
SexAI ACCWGGT 1 cut(s) 404
SfaNI GCATC 3 cut(s) 591, 603, 1046
SfcI CTRYAG 3 cut(s) 357, 437, 787
Sfr303I CCGCGG 1 cut(s) 967
SgrBI CCGCGG 1 cut(s) 967
SinI GGWCC 2 cut(s) 158, 497
SmiMI CAYNNNNRTG 4 cut(s) 299, 384, 946, 1067
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
Sse9I AATT 6 cut(s) 117, 193, 336, 414, 629, 840
SseBI AGGCCT 3 cut(s) 530, 566, 1033
SsiI CCGC 5 cut(s) 324, 512, 660, 964, 966
SspMI CTAG 1 cut(s) 8
StuI AGGCCT 3 cut(s) 530, 566, 1033
StyD4I CCNGG 5 cut(s) 223, 404, 484, 616, 750
TaaI ACNGT 3 cut(s) 501, 605, 675
TaqI TCGA 4 cut(s) 30, 1020, 1040, 1067
TasI AATT 6 cut(s) 117, 193, 336, 414, 629, 840
TatI WGTACW 2 cut(s) 66, 426
TauI GCSGC 1 cut(s) 515
TfiI GAWTC 1 cut(s) 597
Tru1I TTAA 2 cut(s) 120, 843
Tru9I TTAA 2 cut(s) 120, 843
TscAI CASTG 2 cut(s) 168, 629
TseFI GTSAC 1 cut(s) 1060
TseI GCWGC 6 cut(s) 356, 359, 362, 436, 680, 878
Tsp45I GTSAC 1 cut(s) 1060
TspDTI ATGAA 4 cut(s) 684, 837, 912, 936
TspGWI ACGGA 1 cut(s) 968
TspRI CASTG 2 cut(s) 168, 629
VpaK11BI GGWCC 2 cut(s) 158, 497
VspI ATTAAT 1 cut(s) 120
XapI RAATTY 1 cut(s) 629
XmnI GAANNNNTTC 1 cut(s) 336
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.