Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001504

Physical Location & Seq

Genomic Coordinates Forward (+)

18926811 .. 18927746

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCGGGTCGTGGTAAAACACTCGGATCTGGGTCTGCGAAGAAGGCAACAACAAGAAGCAGCAAAGCCGGTCTCCAATTCCCTGTGGGTCGTATCGCTCGTTTCTTGAAGAAAGGCAAATACGCCGAACGTGTTGGTGCCGGAGCTCCGGTTTACTTAGCCGCCGTTCTCGAATACCTCGCCGCTGAGGTATTGGAATTGGCTGGAAACGCAGCGAGGGATAACAAGAAGACGAGGATTGTTCCAAGGCATATTCAATTGGCGGTGAGGAACGATGAAGAATTGAGCAAATTGCTTGGAGATGTGACTATTGCTAATGGAGGTGTGATGCCTAACATTCACAATCTTCTTCTTCCTAAGAAGACCGGTGCTTCCAAGCCATCTGCTGAAGACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006950 GO:0006996 GO:0008150 GO:0009292 GO:0009294 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

132

Amino Acids

13.93

Weight (kDa)

10.1

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	13 - 90	1.6e-14	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	93 - 126	5.3e-19	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51060 AT3G20670 AT4G27230 AT4G27230 AT5G54640
fragaria_vesca	FvH4_3g02940 FvH4_3g21650
malus_domestica	MD03G1213800.v1.1 MD03G1238000.v1.1 MD05G1335800.v1.1 MD10G1311400.v1.1
prunus_persica	Prupe.4G029500_v2.0.a1 Prupe.4G200700_v2.0.a1
pyrus_communis	pycom03g16220 pycom05g30720 pycom10g26260 pycom11g20100
rosa_chinensis	RchiOBHm_Chr1g0369691 RchiOBHm_Chr5g0004551 RchiOBHm_Chr5g0031581 RchiOBHm_Chr5g0037131 RchiOBHm_Chr5g0054271 RchiOBHm_Chr6g0246221 RchiOBHm_Chr6g0272401
rosa_laevigata	RLG00000031239 RLG00000033752
rosa_multiflora	Rmu_co8073734.1_g000001 Rmu_sc0002354.1_g000017 Rmu_sc0003758.1_g000011 Rmu_sc0004802.1_g000002 Rmu_sc0018628.1_g000004 Rmu_sc0042798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043850 Rroxscaffold_1G00070980
rosa_rugosa	Rorug04G0412200 Rorug05G0160900 Rorug05G0310600 Rorug05G0519700
rosa_samantha	Rh4BG384100 Rh4CG398800 Rh5BG039700 Rh5BG254500 Rh5CG043400 Rh5CG287000 Rh5DG039200 Rh5DG262900 Rh6AG354100 Rh6CG397000
rosa_wichuraiana	Rw4G018680 Rw5G003870 Rw5G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AciI	CCGC	4 cut(s)	5, 162, 183, 263
AclWI	GGATC	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	130
AgeI	ACCGGT	1 cut(s)	365
AgsI	TTSAA	2 cut(s)	109, 257
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	60, 212
AsiGI	ACCGGT	1 cut(s)	365
AsuHPI	GGTGA	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	148
BbsI	GAAGAC	2 cut(s)	236, 368
Bbv12I	GWGCWC	1 cut(s)	148
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	72, 224
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	77
BisI	GCNGC	4 cut(s)	61, 162, 183, 213
BlsI	GCNGC	4 cut(s)	62, 163, 184, 214
BmiI	GGNNCC	1 cut(s)	139
BmsI	GCATC	1 cut(s)	318
BpiI	GAAGAC	2 cut(s)	236, 368
Bpu10I	CCTNAGC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	245
BsaWI	WCCGGW	2 cut(s)	148, 365
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bse118I	RCCGGY	2 cut(s)	68, 365
BseDI	CCNNGG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	72, 224
BshNI	GGYRCC	1 cut(s)	137
BshTI	ACCGGT	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	4 cut(s)	69, 141, 149, 366
BsmAI	GTCTC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	26
BspACI	CCGC	4 cut(s)	5, 162, 183, 263
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	77
BsrFI	RCCGGY	2 cut(s)	68, 365
BssAI	RCCGGY	2 cut(s)	68, 365
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	245
BstDEI	CTNAG	3 cut(s)	157, 186, 357
BstKTI	GATC	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 209
BstV1I	GCAGC	2 cut(s)	72, 224
BstV2I	GAAGAC	2 cut(s)	236, 368
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
Cfr10I	RCCGGY	2 cut(s)	68, 365
CspAI	ACCGGT	1 cut(s)	365
CviJI	RGCY	5 cut(s)	68, 146, 161, 203, 379
CviKI_1	RGCY	5 cut(s)	68, 146, 161, 203, 379
DdeI	CTNAG	3 cut(s)	157, 186, 357
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	245
FaiI	YATR	1 cut(s)	252
Fnu4HI	GCNGC	4 cut(s)	61, 162, 183, 213
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	4 cut(s)	61, 162, 183, 213
GluI	GCNGC	4 cut(s)	61, 162, 183, 213
HapII	CCGG	4 cut(s)	69, 141, 149, 366
HpaII	CCGG	4 cut(s)	69, 141, 149, 366
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	2 cut(s)	106, 170
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 209
HpyF3I	CTNAG	3 cut(s)	157, 186, 357
HpySE526I	ACGT	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	26
LmnI	GCTCC	2 cut(s)	143, 151
LpnPI	CCDG	7 cut(s)	15, 82, 96, 154, 162, 189, 379
Lsp1109I	GCAGC	2 cut(s)	72, 224
LweI	GCATC	1 cut(s)	318
MaeII	ACGT	1 cut(s)	130
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	8 cut(s)	52, 121, 241, 290, 338, 341, 344, 373
MfeI	CAATTG	1 cut(s)	257
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	5 cut(s)	77, 197, 257, 281, 290
MnlI	CCTC	6 cut(s)	181, 188, 210, 228, 261, 314
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	4 cut(s)	69, 141, 149, 366
MunI	CAATTG	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	44, 209
NdeII	GATC	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PinAI	ACCGGT	1 cut(s)	365
PkrI	GCNGC	4 cut(s)	62, 163, 184, 214
Psp124BI	GAGCTC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	148
SatI	GCNGC	4 cut(s)	61, 162, 183, 213
Sau3AI	GATC	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	5 cut(s)	133, 148, 180, 192, 325
SfaNI	GCATC	1 cut(s)	318
Sse9I	AATT	5 cut(s)	77, 197, 257, 281, 290
SsiI	CCGC	4 cut(s)	5, 162, 183, 263
SstI	GAGCTC	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	245
TaiI	ACGT	1 cut(s)	133
TaqI	TCGA	1 cut(s)	171
TasI	AATT	5 cut(s)	77, 197, 257, 281, 290
TauI	GCSGC	2 cut(s)	164, 185
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	2 cut(s)	60, 212
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.