Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001504

Physical Location & Seq

Genomic Coordinates Forward (+)

56765902 .. 56766770

Gene Structure 869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33145

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTGCCATGTTGGCAATCCGTGTGACCTTGCTCTTAACCAATCAGTGCACAACATCGGGTCCTATAGATTAGAACTCCACTGCTTTTCTAATTCCATCACAGAGCAACTCCCAACCCACACTCTCTCTCAAATCAGGTCTGTGTCCAGGTCAAGCAAAACTGGGCTTCAATTTCCGGTAGGTAGGATCGCCTGGTTTCTTAAGTCCTGCCAATACGCCGAGCGTGTCGGCGCTAGAGCTCTGGTGTATCTTTCGGCTGTCCTTGAATACCTGGCTGCCGAGCTAAAGATTGGAAATTTGATTTTGGGTTTAAGGTTTGTGCTGATTTGGTTTATGAATTTGAGAATTTTGGTTTTGGAGCTTGCTGGCAACACAGCTAGGGACAACAAGAAGAACCGTATTGTACTGAGGTGTACAATCTCAAATCAGCTATGGTTTCTTGTAGAACCACCCTATATACTCACAGATGTAATATGTATACAAAGGCTATGTTGGCCGTTTCTATCTAAATTATGCATCATAAAATATCAGAATTTGCCCTTTTCTATTCTCAACATTACGAGTTTTACTTTGTTCTTTGATGAACTTGCAATTGCCCAAGGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

202

Amino Acids

23.02

Weight (kDa)

9.11

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51060 AT3G20670 AT4G27230 AT4G27230 AT5G54640
fragaria_vesca	FvH4_3g02940 FvH4_3g21650
malus_domestica	MD03G1213800.v1.1 MD03G1238000.v1.1 MD05G1335800.v1.1 MD10G1311400.v1.1
prunus_persica	Prupe.4G029500_v2.0.a1 Prupe.4G200700_v2.0.a1
pyrus_communis	pycom03g16220 pycom05g30720 pycom10g26260 pycom11g20100
rosa_chinensis	RchiOBHm_Chr1g0369691 RchiOBHm_Chr5g0004551 RchiOBHm_Chr5g0031581 RchiOBHm_Chr5g0037131 RchiOBHm_Chr5g0054271 RchiOBHm_Chr6g0246221 RchiOBHm_Chr6g0272401
rosa_laevigata	RLG00000031239 RLG00000033752
rosa_multiflora	Rmu_co8073734.1_g000001 Rmu_sc0002354.1_g000017 Rmu_sc0003758.1_g000011 Rmu_sc0004802.1_g000002 Rmu_sc0018628.1_g000004 Rmu_sc0042798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043850 Rroxscaffold_1G00070980
rosa_rugosa	Rorug04G0412200 Rorug05G0160900 Rorug05G0310600 Rorug05G0519700
rosa_samantha	Rh4BG384100 Rh4CG398800 Rh5BG039700 Rh5BG254500 Rh5CG043400 Rh5CG287000 Rh5DG039200 Rh5DG262900 Rh6AG354100 Rh6CG397000
rosa_wichuraiana	Rw4G018680 Rw5G003870 Rw5G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	478
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	494
AcsI	RAATTY	4 cut(s)	295, 337, 345, 532
AfaI	GTAC	2 cut(s)	405, 415
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	2 cut(s)	170, 266
AjnI	CCWGG	3 cut(s)	146, 191, 270
AluBI	AGCT	5 cut(s)	239, 283, 361, 377, 430
AluI	AGCT	5 cut(s)	239, 283, 361, 377, 430
Alw21I	GWGCWC	2 cut(s)	51, 241
Alw44I	GTGCAC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	494
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	4 cut(s)	295, 337, 345, 532
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	241
Bbv12I	GWGCWC	2 cut(s)	51, 241
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	481
BciT130I	CCWGG	3 cut(s)	148, 193, 272
BfaI	CTAG	2 cut(s)	234, 378
BfmI	CTRYAG	1 cut(s)	64
BfoI	RGCGCY	1 cut(s)	234
BfrI	CTTAAG	1 cut(s)	200
BglI	GCCNNNNNGGC	1 cut(s)	12
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	3 cut(s)	148, 193, 272
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	3 cut(s)	148, 193, 272
BmrI	ACTGGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	525
BmuI	ACTGGG	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	598
BsaWI	WCCGGW	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	166
BseBI	CCWGG	3 cut(s)	148, 193, 272
BseDI	CCNNGG	1 cut(s)	598
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	1 cut(s)	166
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	262
BshFI	GGCC	1 cut(s)	496
BsiHKAI	GWGCWC	2 cut(s)	51, 241
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	496
Bsp1286I	GDGCHC	2 cut(s)	51, 241
Bsp1407I	TGTACA	1 cut(s)	413
Bsp143I	GATC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	496
BspCNI	CTCAG	1 cut(s)	399
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	1 cut(s)	194
BspTI	CTTAAG	1 cut(s)	200
BsrGI	TGTACA	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	598
BssMI	GATC	1 cut(s)	186
BssNAI	GTATAC	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	598
Bst1107I	GTATAC	1 cut(s)	479
Bst2UI	CCWGG	3 cut(s)	148, 193, 272
Bst4CI	ACNGT	1 cut(s)	398
BstAFI	CTTAAG	1 cut(s)	200
BstAUI	TGTACA	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	363, 367
BstDEI	CTNAG	1 cut(s)	407
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 493
BstNI	CCWGG	3 cut(s)	148, 193, 272
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	3 cut(s)	146, 191, 270
BstSFI	CTRYAG	1 cut(s)	64
BstSLI	GKGCMC	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	262
BstZ17I	GTATAC	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	496
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	51, 79
Cac8I	GCNNGC	2 cut(s)	363, 367
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	60
Csp6I	GTAC	2 cut(s)	404, 414
CviAII	CATG	2 cut(s)	8, 604
CviQI	GTAC	2 cut(s)	404, 414
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	494
Ecl136II	GAGCTC	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	598
Eco24I	GRGCYC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	60
EcoRII	CCWGG	3 cut(s)	146, 191, 270
EcoT14I	CCWWGG	1 cut(s)	598
EcoT22I	ATGCAT	1 cut(s)	518
EcoT38I	GRGCYC	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	598
FaeI	CATG	2 cut(s)	11, 607
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	2 cut(s)	7, 603
FblI	GTMKAC	1 cut(s)	478
Fnu4HI	GCNGC	1 cut(s)	276
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	2 cut(s)	234, 378
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	1 cut(s)	276
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	496
HapII	CCGG	1 cut(s)	176
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	2 cut(s)	11, 607
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HpaII	CCGG	1 cut(s)	176
Hpy166II	GTNNAC	3 cut(s)	49, 414, 479
Hpy188I	TCNGA	1 cut(s)	531
Hpy8I	GTNNAC	3 cut(s)	49, 414, 479
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4V	TGCA	3 cut(s)	49, 516, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 493
HpyF3I	CTNAG	1 cut(s)	407
Hsp92II	CATG	2 cut(s)	11, 607
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	358
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	1 cut(s)	525
MaeI	CTAG	2 cut(s)	234, 378
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	1 cut(s)	403
MfeI	CAATTG	1 cut(s)	591
MhlI	GDGCHC	2 cut(s)	51, 241
MluCI	AATT	8 cut(s)	91, 170, 295, 337, 345, 509, 532, 591
MnlI	CCTC	1 cut(s)	402
Mph1103I	ATGCAT	1 cut(s)	518
MseI	TTAA	3 cut(s)	36, 201, 311
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	3 cut(s)	148, 193, 272
MunI	CAATTG	1 cut(s)	591
MvaI	CCWGG	3 cut(s)	148, 193, 272
MwoI	GCNNNNNNNGC	2 cut(s)	12, 493
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	2 cut(s)	11, 607
NlaIV	GGNNCC	1 cut(s)	61
NmeAIII	GCCGAG	2 cut(s)	244, 304
NmuCI	GTSAC	1 cut(s)	23
NsiI	ATGCAT	1 cut(s)	518
NspI	RCATGY	1 cut(s)	607
PkrI	GCNGC	1 cut(s)	277
PpuMI	RGGWCCY	1 cut(s)	60
Psp124BI	GAGCTC	1 cut(s)	241
Psp5II	RGGWCCY	1 cut(s)	60
Psp6I	CCWGG	3 cut(s)	146, 191, 270
PspGI	CCWGG	3 cut(s)	146, 191, 270
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	60
PspPPI	RGGWCCY	1 cut(s)	60
RsaI	GTAC	2 cut(s)	405, 415
RsaNI	GTAC	2 cut(s)	404, 414
SacI	GAGCTC	1 cut(s)	241
SaqAI	TTAA	3 cut(s)	36, 201, 311
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	1 cut(s)	60
ScrFI	CCNGG	3 cut(s)	148, 193, 272
SduI	GDGCHC	2 cut(s)	51, 241
SfaNI	GCATC	1 cut(s)	525
SfcI	CTRYAG	1 cut(s)	64
SinI	GGWCC	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	8 cut(s)	91, 170, 295, 337, 345, 509, 532, 591
SspMI	CTAG	2 cut(s)	234, 378
SstI	GAGCTC	1 cut(s)	241
StyD4I	CCNGG	3 cut(s)	146, 191, 270
StyI	CCWWGG	1 cut(s)	598
TaaI	ACNGT	1 cut(s)	398
TasI	AATT	8 cut(s)	91, 170, 295, 337, 345, 509, 532, 591
TatI	WGTACW	2 cut(s)	403, 413
Tru1I	TTAA	3 cut(s)	36, 201, 311
Tru9I	TTAA	3 cut(s)	36, 201, 311
TscAI	CASTG	2 cut(s)	51, 86
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	350, 597
TspGWI	ACGGA	1 cut(s)	9
TspRI	CASTG	2 cut(s)	51, 86
Vha464I	CTTAAG	1 cut(s)	200
VneI	GTGCAC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	4 cut(s)	295, 337, 345, 532
XceI	RCATGY	1 cut(s)	607
XmiI	GTMKAC	1 cut(s)	478
XspI	CTAG	2 cut(s)	234, 378
Zsp2I	ATGCAT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.