Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001504

Physical Location & Seq

Genomic Coordinates Reverse (-)

91936596 .. 91937302

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00070980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCCGGAAGAGGCAAATCGCTCGGCTCCGGCGCCGCCAAGAAGGCCACCTCCCGCAGCAGCAAAGCCGGCCTCCAATTCCCCGTCGGCCGTATCGCTCGCTTCCTCAAATCCGGCAAGTACGCCGAGCGCGTCGGCGCCGGCGCTCCCGTCTACCTCGCTGCCGTCCTCGAATACCTCGCCGCCGAGGTTTTGGAACTGGCCGGAAATGCAGCCAGGGACAACAAGAAGACTCGGATTGTGCCACGTCACATCCAATTGGCCGTCCGGAATGACGAGGAGCTCGGCAGGCTTCTCGGTTCAGTCACCATCGCAAACGGCGGCGTTTTGCCCAACATCCACAACATGCTTCTTCCCAAGAAGACCTCCAAGAGCGCTCCGGCCGACGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

131

Amino Acids

13.76

Weight (kDa)

10.23

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	13 - 90	1.6e-14	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	93 - 126	9.4e-19	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51060 AT3G20670 AT4G27230 AT4G27230 AT5G54640
fragaria_vesca	FvH4_3g02940 FvH4_3g21650
malus_domestica	MD03G1213800.v1.1 MD03G1238000.v1.1 MD05G1335800.v1.1 MD10G1311400.v1.1
prunus_persica	Prupe.4G029500_v2.0.a1 Prupe.4G200700_v2.0.a1
pyrus_communis	pycom03g16220 pycom05g30720 pycom10g26260 pycom11g20100
rosa_chinensis	RchiOBHm_Chr1g0369691 RchiOBHm_Chr5g0004551 RchiOBHm_Chr5g0031581 RchiOBHm_Chr5g0037131 RchiOBHm_Chr5g0054271 RchiOBHm_Chr6g0246221 RchiOBHm_Chr6g0272401
rosa_laevigata	RLG00000031239 RLG00000033752
rosa_multiflora	Rmu_co8073734.1_g000001 Rmu_sc0002354.1_g000017 Rmu_sc0003758.1_g000011 Rmu_sc0004802.1_g000002 Rmu_sc0018628.1_g000004 Rmu_sc0042798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043850 Rroxscaffold_1G00070980
rosa_rugosa	Rorug04G0412200 Rorug05G0160900 Rorug05G0310600 Rorug05G0519700
rosa_samantha	Rh4BG384100 Rh4CG398800 Rh5BG039700 Rh5BG254500 Rh5CG043400 Rh5CG287000 Rh5DG039200 Rh5DG262900 Rh6AG354100 Rh6CG397000
rosa_wichuraiana	Rw4G018680 Rw5G003870 Rw5G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	32, 137
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	132
AccIII	TCCGGA	1 cut(s)	267
AciI	CCGC	4 cut(s)	36, 55, 183, 321
AcoI	YGGCCR	5 cut(s)	3, 88, 201, 261, 381
AcyI	GRCGYC	2 cut(s)	33, 138
AfaI	GTAC	1 cut(s)	122
AfeI	AGCGCT	1 cut(s)	376
AjiI	CACGTC	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	215
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw21I	GWGCWC	1 cut(s)	285
Aor13HI	TCCGGA	1 cut(s)	267
Aor51HI	AGCGCT	1 cut(s)	376
AoxI	GGCC	7 cut(s)	3, 45, 70, 88, 201, 261, 381
ApeKI	GCWGC	4 cut(s)	57, 60, 161, 212
AspLEI	GCGC	5 cut(s)	35, 132, 140, 146, 377
AsuHPI	GGTGA	1 cut(s)	298
BanI	GGYRCC	2 cut(s)	32, 137
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	2 cut(s)	236, 368
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	4 cut(s)	69, 72, 148, 224
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	4 cut(s)	75, 149, 248, 334
BcgI	CGANNNNNNTGC	4 cut(s)	4, 38, 277, 311
BciT130I	CCWGG	1 cut(s)	217
BfoI	RGCGCY	4 cut(s)	36, 141, 147, 378
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	7 cut(s)	36, 58, 61, 162, 183, 213, 322
BlsI	GCNGC	7 cut(s)	37, 59, 62, 163, 184, 214, 323
Bme1390I	CCNGG	1 cut(s)	217
BmgBI	CACGTC	1 cut(s)	248
BmiI	GGNNCC	3 cut(s)	28, 34, 139
BmrFI	CCNGG	1 cut(s)	217
BpiI	GAAGAC	2 cut(s)	236, 368
BsaHI	GRCGYC	2 cut(s)	33, 138
BsaJI	CCNNGG	2 cut(s)	186, 216
BsaWI	WCCGGW	1 cut(s)	267
Bse118I	RCCGGY	2 cut(s)	68, 140
Bse1I	ACTGG	1 cut(s)	204
BseAI	TCCGGA	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	2 cut(s)	186, 216
BseGI	GGATG	2 cut(s)	252, 336
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	293
BseX3I	CGGCCG	2 cut(s)	88, 381
BseXI	GCAGC	4 cut(s)	69, 72, 148, 224
Bsh1236I	CGCG	1 cut(s)	132
Bsh1285I	CGRYCG	2 cut(s)	91, 384
BshFI	GGCC	7 cut(s)	5, 47, 72, 90, 203, 263, 383
BshNI	GGYRCC	2 cut(s)	32, 137
BsiEI	CGRYCG	2 cut(s)	91, 384
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	8 cut(s)	6, 30, 69, 114, 141, 204, 268, 380
BslFI	GGGAC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	7 cut(s)	5, 47, 72, 90, 203, 263, 383
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp13I	TCCGGA	1 cut(s)	267
BspACI	CCGC	4 cut(s)	36, 55, 183, 321
BspANI	GGCC	7 cut(s)	5, 47, 72, 90, 203, 263, 383
BspEI	TCCGGA	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	3 cut(s)	28, 34, 139
BspT107I	GGYRCC	2 cut(s)	32, 137
BsrFI	RCCGGY	2 cut(s)	68, 140
BsrI	ACTGG	1 cut(s)	204
BssAI	RCCGGY	2 cut(s)	68, 140
BssECI	CCNNGG	2 cut(s)	186, 216
BssNI	GRCGYC	2 cut(s)	33, 138
Bst2UI	CCWGG	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	4
BstACI	GRCGYC	2 cut(s)	33, 138
BstC8I	GCNNGC	4 cut(s)	70, 100, 142, 290
BstF5I	GGATG	2 cut(s)	252, 336
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	4 cut(s)	36, 141, 147, 378
BstHHI	GCGC	5 cut(s)	35, 132, 140, 146, 377
BstMCI	CGRYCG	2 cut(s)	91, 384
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 69, 209, 289
BstNI	CCWGG	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	215
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	4 cut(s)	69, 72, 148, 224
BstV2I	GAAGAC	2 cut(s)	236, 368
BstZI	CGGCCG	2 cut(s)	88, 381
BsuRI	GGCC	7 cut(s)	5, 47, 72, 90, 203, 263, 383
BtgZI	GCGATG	1 cut(s)	295
BtrI	CACGTC	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	252, 336
Cac8I	GCNNGC	4 cut(s)	70, 100, 142, 290
CfoI	GCGC	5 cut(s)	35, 132, 140, 146, 377
Cfr10I	RCCGGY	2 cut(s)	68, 140
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	346
CviQI	GTAC	1 cut(s)	121
DinI	GGCGCC	2 cut(s)	34, 139
EaeI	YGGCCR	5 cut(s)	3, 88, 201, 261, 381
EagI	CGGCCG	2 cut(s)	88, 381
Eam1104I	CTCTTC	1 cut(s)	4
EarI	CTCTTC	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	283
EclXI	CGGCCG	2 cut(s)	88, 381
Eco24I	GRGCYC	1 cut(s)	285
Eco47III	AGCGCT	1 cut(s)	376
Eco52I	CGGCCG	2 cut(s)	88, 381
Eco53kI	GAGCTC	1 cut(s)	283
EcoICRI	GAGCTC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	215
EcoT38I	GRGCYC	1 cut(s)	285
EgeI	GGCGCC	2 cut(s)	34, 139
EheI	GGCGCC	2 cut(s)	34, 139
FaeI	CATG	1 cut(s)	349
FaiI	YATR	1 cut(s)	347
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	1 cut(s)	345
FauI	CCCGC	1 cut(s)	62
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	7 cut(s)	36, 58, 61, 162, 183, 213, 322
FokI	GGATG	2 cut(s)	239, 323
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	7 cut(s)	36, 58, 61, 162, 183, 213, 322
GlaI	GCGC	5 cut(s)	34, 131, 139, 145, 376
GluI	GCNGC	7 cut(s)	36, 58, 61, 162, 183, 213, 322
HaeII	RGCGCY	4 cut(s)	36, 141, 147, 378
HaeIII	GGCC	7 cut(s)	5, 47, 72, 90, 203, 263, 383
HapII	CCGG	8 cut(s)	6, 30, 69, 114, 141, 204, 268, 380
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	5 cut(s)	35, 132, 140, 146, 377
Hin1I	GRCGYC	2 cut(s)	33, 138
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	5 cut(s)	33, 130, 138, 144, 375
HinP1I	GCGC	5 cut(s)	33, 130, 138, 144, 375
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	8 cut(s)	6, 30, 69, 114, 141, 204, 268, 380
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	1 cut(s)	268
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	3 cut(s)	89, 137, 389
HpyAV	CCTTC	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 69, 209, 289
HpySE526I	ACGT	1 cut(s)	247
Hsp92I	GRCGYC	2 cut(s)	33, 138
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	5 cut(s)	33, 130, 138, 144, 375
KasI	GGCGCC	2 cut(s)	32, 137
Kpn2I	TCCGGA	1 cut(s)	267
KroI	GCCGGC	2 cut(s)	68, 140
KroNI	GCCGGC	2 cut(s)	70, 142
LmnI	GCTCC	4 cut(s)	32, 151, 280, 382
Lsp1109I	GCAGC	4 cut(s)	69, 72, 148, 224
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	2 cut(s)	248, 304
MboII	GAAGA	4 cut(s)	21, 241, 344, 373
MfeI	CAATTG	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	2 cut(s)	77, 257
Mly113I	GGCGCC	2 cut(s)	33, 138
MlyI	GAGTC	1 cut(s)	226
MreI	CGCCGGCG	1 cut(s)	140
MroI	TCCGGA	1 cut(s)	267
MroNI	GCCGGC	2 cut(s)	68, 140
MspI	CCGG	8 cut(s)	6, 30, 69, 114, 141, 204, 268, 380
MspR9I	CCNGG	1 cut(s)	217
MunI	CAATTG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	217
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	4 cut(s)	44, 69, 209, 289
NaeI	GCCGGC	2 cut(s)	70, 142
NarI	GGCGCC	2 cut(s)	33, 138
NgoMIV	GCCGGC	2 cut(s)	68, 140
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	3 cut(s)	28, 34, 139
NmeAIII	GCCGAG	3 cut(s)	151, 211, 264
NmuCI	GTSAC	2 cut(s)	248, 304
NspI	RCATGY	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PdiI	GCCGGC	2 cut(s)	70, 142
PkrI	GCNGC	7 cut(s)	37, 59, 62, 163, 184, 214, 323
PleI	GAGTC	1 cut(s)	226
PluTI	GGCGCC	2 cut(s)	36, 141
PpsI	GAGTC	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	3 cut(s)	28, 34, 139
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	285
SatI	GCNGC	7 cut(s)	36, 58, 61, 162, 183, 213, 322
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	7 cut(s)	53, 159, 180, 192, 250, 285, 368
SfoI	GGCGCC	2 cut(s)	34, 139
SgrAI	CRCCGGYG	1 cut(s)	140
Sse9I	AATT	2 cut(s)	77, 257
SsiI	CCGC	4 cut(s)	36, 55, 183, 321
SspDI	GGCGCC	2 cut(s)	32, 137
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	215
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	171
TasI	AATT	2 cut(s)	77, 257
TauI	GCSGC	3 cut(s)	38, 185, 324
TseFI	GTSAC	2 cut(s)	248, 304
TseI	GCWGC	4 cut(s)	57, 60, 161, 212
Tsp45I	GTSAC	2 cut(s)	248, 304
XceI	RCATGY	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.