Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001504

Physical Location & Seq

Genomic Coordinates Reverse (-)

17370354 .. 17371477

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCGGGTCGTGGCAAAGCTTTGGGATCCGGAGCCGCTAAGAAGGCCACATCGCGGTCCAGCAAGGCCGGTTTGCAATTCCCTGTCGGTCGTATTGCTCGTTTCCTGAAAGCAGGAAAGTACGCCGAACGTGTCGGTGCCGGAGCTCCGGTATACCTCGCCGCTGTCCTTGAATACCTTGCCGCTGAGGTTCTGGAATTGGCTGGTAATGCTGCAAGAGACAACAAGAAGACTCGCATTGTACCTCGCCACATTCAGCTCGCTGTGCGCAATGACGAGGAGCTCAGCAAGCTTCTTGGTGATGTGACAATTGCAAATGGTGGTGTGATGCCCAACATTCACAACCTTCTGCTCCCAAAGAAGACCGGTGCCTCATCCAAGAACGTCGGTGGTGATGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

135

Amino Acids

13.96

Weight (kDa)

10.05

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51060 AT3G20670 AT4G27230 AT4G27230 AT5G54640
fragaria_vesca	FvH4_3g02940 FvH4_3g21650
malus_domestica	MD03G1213800.v1.1 MD03G1238000.v1.1 MD05G1335800.v1.1 MD10G1311400.v1.1
prunus_persica	Prupe.4G029500_v2.0.a1 Prupe.4G200700_v2.0.a1
pyrus_communis	pycom03g16220 pycom05g30720 pycom10g26260 pycom11g20100
rosa_chinensis	RchiOBHm_Chr1g0369691 RchiOBHm_Chr5g0004551 RchiOBHm_Chr5g0031581 RchiOBHm_Chr5g0037131 RchiOBHm_Chr5g0054271 RchiOBHm_Chr6g0246221 RchiOBHm_Chr6g0272401
rosa_laevigata	RLG00000031239 RLG00000033752
rosa_multiflora	Rmu_co8073734.1_g000001 Rmu_sc0002354.1_g000017 Rmu_sc0003758.1_g000011 Rmu_sc0004802.1_g000002 Rmu_sc0018628.1_g000004 Rmu_sc0042798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043850 Rroxscaffold_1G00070980
rosa_rugosa	Rorug04G0412200 Rorug05G0160900 Rorug05G0310600 Rorug05G0519700
rosa_samantha	Rh4BG384100 Rh4CG398800 Rh5BG039700 Rh5BG254500 Rh5CG043400 Rh5CG287000 Rh5DG039200 Rh5DG262900 Rh6AG354100 Rh6CG397000
rosa_wichuraiana	Rw4G018680 Rw5G003870 Rw5G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	269
AccB1I	GGYRCC	2 cut(s)	137, 368
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	55
AccIII	TCCGGA	1 cut(s)	29
AciI	CCGC	5 cut(s)	5, 36, 55, 162, 183
AclWI	GGATC	2 cut(s)	21, 34
AfaI	GTAC	2 cut(s)	122, 243
AfiI	CCNNNNNNNGG	1 cut(s)	54
AflIII	ACRYGT	1 cut(s)	130
AgeI	ACCGGT	1 cut(s)	365
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	5 cut(s)	20, 146, 259, 283, 292
AluI	AGCT	5 cut(s)	20, 146, 259, 283, 292
Alw21I	GWGCWC	2 cut(s)	148, 285
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	2 cut(s)	21, 34
Aor13HI	TCCGGA	1 cut(s)	29
AoxI	GGCC	2 cut(s)	45, 66
ApeKI	GCWGC	1 cut(s)	212
AsiGI	ACCGGT	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	311, 404
AvaII	GGWCC	1 cut(s)	57
BamHI	GGATCC	1 cut(s)	26
BanI	GGYRCC	2 cut(s)	137, 368
BanII	GRGCYC	2 cut(s)	148, 285
BbsI	GAAGAC	2 cut(s)	236, 368
Bbv12I	GWGCWC	2 cut(s)	148, 285
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	213
BisI	GCNGC	4 cut(s)	36, 162, 183, 213
BlpI	GCTNAGC	1 cut(s)	284
BlsI	GCNGC	4 cut(s)	37, 163, 184, 214
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	4 cut(s)	28, 34, 139, 370
BmsI	GCATC	1 cut(s)	318
BpiI	GAAGAC	2 cut(s)	236, 368
Bpu10I	CCTNAGC	1 cut(s)	186
Bpu1102I	GCTNAGC	1 cut(s)	284
BsaWI	WCCGGW	3 cut(s)	29, 148, 365
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse118I	RCCGGY	2 cut(s)	68, 365
Bse3DI	GCAATG	1 cut(s)	277
BseAI	TCCGGA	1 cut(s)	29
BseGI	GGATG	1 cut(s)	374
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	2 cut(s)	177, 298
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	55
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	2 cut(s)	47, 68
BshNI	GGYRCC	2 cut(s)	137, 368
BshTI	ACCGGT	1 cut(s)	365
BsiEI	CGRYCG	1 cut(s)	91
BsiHKAI	GWGCWC	2 cut(s)	148, 285
BsiSI	CCGG	5 cut(s)	30, 69, 141, 149, 366
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	213
BsnI	GGCC	2 cut(s)	47, 68
Bsp1286I	GDGCHC	2 cut(s)	148, 285
Bsp13I	TCCGGA	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	26
Bsp1720I	GCTNAGC	1 cut(s)	284
BspACI	CCGC	5 cut(s)	5, 36, 55, 162, 183
BspANI	GGCC	2 cut(s)	47, 68
BspCNI	CTCAG	2 cut(s)	178, 297
BspEI	TCCGGA	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	55
BspLI	GGNNCC	4 cut(s)	28, 34, 139, 370
BspPI	GGATC	2 cut(s)	21, 34
BspT107I	GGYRCC	2 cut(s)	137, 368
BsrDI	GCAATG	1 cut(s)	277
BsrFI	RCCGGY	2 cut(s)	68, 365
BssAI	RCCGGY	2 cut(s)	68, 365
BssMI	GATC	1 cut(s)	26
BssNAI	GTATAC	1 cut(s)	154
Bst1107I	GTATAC	1 cut(s)	154
BstC8I	GCNNGC	2 cut(s)	261, 290
BstDEI	CTNAG	3 cut(s)	39, 186, 284
BstF5I	GGATG	1 cut(s)	374
BstFNI	CGCG	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	26
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 209, 265, 289
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	2 cut(s)	236, 368
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BstZ17I	GTATAC	1 cut(s)	154
BsuRI	GGCC	2 cut(s)	47, 68
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	374
Cac8I	GCNNGC	2 cut(s)	261, 290
CfoI	GCGC	1 cut(s)	270
Cfr10I	RCCGGY	2 cut(s)	68, 365
Cfr13I	GGNCC	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	121, 242
CspAI	ACCGGT	1 cut(s)	365
CviJI	RGCY	9 cut(s)	20, 35, 47, 68, 146, 203, 259, 283, 292
CviKI_1	RGCY	9 cut(s)	20, 35, 47, 68, 146, 203, 259, 283, 292
CviQI	GTAC	2 cut(s)	121, 242
DdeI	CTNAG	3 cut(s)	39, 186, 284
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
Ecl136II	GAGCTC	2 cut(s)	146, 283
Eco24I	GRGCYC	2 cut(s)	148, 285
Eco47I	GGWCC	1 cut(s)	57
Eco53kI	GAGCTC	2 cut(s)	146, 283
EcoICRI	GAGCTC	2 cut(s)	146, 283
EcoT38I	GRGCYC	2 cut(s)	148, 285
FaiI	YATR	1 cut(s)	154
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	4 cut(s)	36, 162, 183, 213
FokI	GGATG	1 cut(s)	361
FriOI	GRGCYC	2 cut(s)	148, 285
Fsp4HI	GCNGC	4 cut(s)	36, 162, 183, 213
FspI	TGCGCA	1 cut(s)	269
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	4 cut(s)	36, 162, 183, 213
HaeIII	GGCC	2 cut(s)	47, 68
HapII	CCGG	5 cut(s)	30, 69, 141, 149, 366
HhaI	GCGC	1 cut(s)	270
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HindIII	AAGCTT	2 cut(s)	18, 290
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	5 cut(s)	30, 69, 141, 149, 366
HphI	GGTGA	2 cut(s)	311, 404
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188III	TCNNGA	3 cut(s)	30, 106, 194
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	2 cut(s)	37, 356
HpyCH4IV	ACGT	2 cut(s)	130, 384
HpyCH4V	TGCA	3 cut(s)	76, 215, 314
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 209, 265, 289
HpyF3I	CTNAG	3 cut(s)	39, 186, 284
HpySE526I	ACGT	2 cut(s)	130, 384
HspAI	GCGC	1 cut(s)	268
Kpn2I	TCCGGA	1 cut(s)	29
Kzo9I	GATC	1 cut(s)	26
LmnI	GCTCC	5 cut(s)	32, 143, 151, 280, 357
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	318
MaeII	ACGT	2 cut(s)	130, 384
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	2 cut(s)	241, 373
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	2 cut(s)	148, 285
MluCI	AATT	3 cut(s)	77, 197, 309
MlyI	GAGTC	1 cut(s)	226
MnlI	CCTC	5 cut(s)	167, 181, 255, 271, 382
MroI	TCCGGA	1 cut(s)	29
MspA1I	CMGCKG	2 cut(s)	164, 185
MspI	CCGG	5 cut(s)	30, 69, 141, 149, 366
MunI	CAATTG	1 cut(s)	309
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	4 cut(s)	44, 209, 265, 289
NdeII	GATC	1 cut(s)	26
NlaIV	GGNNCC	4 cut(s)	28, 34, 139, 370
NmuCI	GTSAC	1 cut(s)	304
NsbI	TGCGCA	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PinAI	ACCGGT	1 cut(s)	365
PkrI	GCNGC	4 cut(s)	37, 163, 184, 214
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Psp124BI	GAGCTC	2 cut(s)	148, 285
PspN4I	GGNNCC	4 cut(s)	28, 34, 139, 370
PspPI	GGNCC	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	26
RsaI	GTAC	2 cut(s)	122, 243
RsaNI	GTAC	2 cut(s)	121, 242
SacI	GAGCTC	2 cut(s)	148, 285
SatI	GCNGC	4 cut(s)	36, 162, 183, 213
Sau3AI	GATC	1 cut(s)	26
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	1 cut(s)	226
SduI	GDGCHC	2 cut(s)	148, 285
SfaNI	GCATC	1 cut(s)	318
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	3 cut(s)	77, 197, 309
SsiI	CCGC	5 cut(s)	5, 36, 55, 162, 183
SstI	GAGCTC	2 cut(s)	148, 285
TaiI	ACGT	2 cut(s)	133, 387
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	3 cut(s)	77, 197, 309
TauI	GCSGC	3 cut(s)	38, 164, 185
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	57
XmiI	GTMKAC	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.