Rh6AG354100

histone H2A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001504
Physical Location & Seq
Reverse (-)
55416478 .. 55417497
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG354100.1

Sequence Viewer

Length: 405 bp
ATGTCCAGGTCAAGCAACACTGGGCTTCAATTTCAGGTGGGTAGGATCGCCCAGTTTCTTAAGTCCGGCCAGTACGCCGAGCTTGTCGGCGCCGAAGCTCCGGTGTATCTTTTGGTTGTCCTTGAATACCTGGCTGCCGAGGTTTTGGAGCTTGCTGGCAACGCAGCTAGGGACAACAAGAAGAACCGTATTGTACCGAGGTGTACAATCTCAAATCAGCTATGGTTTTTTGTCGAACCAACCTCATACTATATACACACAGATGTAATATGTATACAAAGGCTATGTTGGCCTTTTCTATCTAAATTATGCATCATAAAATATCAGAAATTGCCATTTTCTGTTCTCAACATTATGAGTTTTGCTTTGTTCTCTGATGAACTTGCCATTGGCCAAGGCATGTAG

Protein Analysis

134

Amino Acids

15.14

Weight (kDa)

8.37

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 89
AccI GTMKAC 1 cut(s) 274
AclWI GGATC 1 cut(s) 53
AcoI YGGCCR 2 cut(s) 67, 391
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 3 cut(s) 74, 195, 205
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 2 cut(s) 29, 125
AjnI CCWGG 2 cut(s) 5, 129
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AluBI AGCT 5 cut(s) 82, 98, 151, 167, 220
AluI AGCT 5 cut(s) 82, 98, 151, 167, 220
AlwI GGATC 1 cut(s) 53
AoxI GGCC 3 cut(s) 67, 290, 391
ApeKI GCWGC 2 cut(s) 134, 164
AspLEI GCGC 1 cut(s) 92
BalI TGGCCA 1 cut(s) 393
BanI GGYRCC 1 cut(s) 89
BbvI GCAGC 2 cut(s) 121, 176
BciT130I CCWGG 2 cut(s) 7, 131
BfaI CTAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 93
BfrI CTTAAG 1 cut(s) 59
BisI GCNGC 2 cut(s) 135, 165
BlsI GCNGC 2 cut(s) 136, 166
Bme1390I CCNGG 2 cut(s) 7, 131
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 2 cut(s) 7, 131
BmrI ACTGGG 2 cut(s) 30, 46
BmsI GCATC 1 cut(s) 321
BmuI ACTGGG 2 cut(s) 30, 46
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 3 cut(s) 138, 197, 394
BsaWI WCCGGW 1 cut(s) 100
Bse1I ACTGG 3 cut(s) 25, 52, 70
BseBI CCWGG 2 cut(s) 7, 131
BseDI CCNNGG 3 cut(s) 138, 197, 394
BseNI ACTGG 3 cut(s) 25, 52, 70
BseXI GCAGC 2 cut(s) 121, 176
BshFI GGCC 3 cut(s) 69, 292, 393
BshNI GGYRCC 1 cut(s) 89
BsiSI CCGG 2 cut(s) 66, 101
BslFI GGGAC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 3 cut(s) 69, 292, 393
Bsp1407I TGTACA 1 cut(s) 203
Bsp143I GATC 1 cut(s) 45
BspANI GGCC 3 cut(s) 69, 292, 393
BspLI GGNNCC 1 cut(s) 91
BspPI GGATC 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 89
BspTI CTTAAG 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 203
BsrI ACTGG 3 cut(s) 25, 52, 70
BssECI CCNNGG 3 cut(s) 138, 197, 394
BssMI GATC 1 cut(s) 45
BssNAI GTATAC 1 cut(s) 275
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 394
Bst1107I GTATAC 1 cut(s) 275
Bst2UI CCWGG 2 cut(s) 7, 131
Bst4CI ACNGT 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 90
BstAFI CTTAAG 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 153, 157
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 2 cut(s) 161, 289
BstNI CCWGG 2 cut(s) 7, 131
BstNSI RCATGY 1 cut(s) 403
BstSCI CCNGG 2 cut(s) 5, 129
BstV1I GCAGC 2 cut(s) 121, 176
BstZ17I GTATAC 1 cut(s) 275
BsuRI GGCC 3 cut(s) 69, 292, 393
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 2 cut(s) 153, 157
CfoI GCGC 1 cut(s) 92
Csp6I GTAC 3 cut(s) 73, 194, 204
CviAII CATG 1 cut(s) 400
CviQI GTAC 3 cut(s) 73, 194, 204
DinI GGCGCC 1 cut(s) 91
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
EaeI YGGCCR 2 cut(s) 67, 391
Eco130I CCWWGG 1 cut(s) 394
EcoRII CCWGG 2 cut(s) 5, 129
EcoT14I CCWWGG 1 cut(s) 394
EcoT22I ATGCAT 1 cut(s) 314
EgeI GGCGCC 1 cut(s) 91
EheI GGCGCC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 1 cut(s) 403
FaqI GGGAC 1 cut(s) 185
FatI CATG 1 cut(s) 399
FblI GTMKAC 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 135, 165
Fsp4HI GCNGC 2 cut(s) 135, 165
FspBI CTAG 1 cut(s) 168
GlaI GCGC 1 cut(s) 91
GluI GCNGC 2 cut(s) 135, 165
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 3 cut(s) 69, 292, 393
HapII CCGG 2 cut(s) 66, 101
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 1 cut(s) 403
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HpaII CCGG 2 cut(s) 66, 101
Hpy166II GTNNAC 2 cut(s) 204, 275
Hpy188I TCNGA 2 cut(s) 327, 376
Hpy8I GTNNAC 2 cut(s) 204, 275
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4V TGCA 1 cut(s) 312
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 289
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 1 cut(s) 403
HspAI GCGC 1 cut(s) 90
KasI GGCGCC 1 cut(s) 89
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 103, 148
Lsp1109I GCAGC 2 cut(s) 121, 176
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 168
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 1 cut(s) 193
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 3 cut(s) 29, 305, 329
MluNI TGGCCA 1 cut(s) 393
Mly113I GGCGCC 1 cut(s) 90
MnlI CCTC 3 cut(s) 133, 192, 253
Mox20I TGGCCA 1 cut(s) 393
Mph1103I ATGCAT 1 cut(s) 314
MscI TGGCCA 1 cut(s) 393
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 261
Msp20I TGGCCA 1 cut(s) 393
MspCI CTTAAG 1 cut(s) 59
MspI CCGG 2 cut(s) 66, 101
MspR9I CCNGG 2 cut(s) 7, 131
MvaI CCWGG 2 cut(s) 7, 131
MwoI GCNNNNNNNGC 2 cut(s) 161, 289
NarI GGCGCC 1 cut(s) 90
NdeII GATC 1 cut(s) 45
NlaIII CATG 1 cut(s) 403
NlaIV GGNNCC 1 cut(s) 91
NmeAIII GCCGAG 2 cut(s) 103, 163
NsiI ATGCAT 1 cut(s) 314
NspI RCATGY 1 cut(s) 403
PkrI GCNGC 2 cut(s) 136, 166
PluTI GGCGCC 1 cut(s) 93
Psp6I CCWGG 2 cut(s) 5, 129
PspGI CCWGG 2 cut(s) 5, 129
PspN4I GGNNCC 1 cut(s) 91
RsaI GTAC 3 cut(s) 74, 195, 205
RsaNI GTAC 3 cut(s) 73, 194, 204
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 2 cut(s) 135, 165
Sau3AI GATC 1 cut(s) 45
ScrFI CCNGG 2 cut(s) 7, 131
SfaNI GCATC 1 cut(s) 321
SfoI GGCGCC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 3 cut(s) 29, 305, 329
SspDI GGCGCC 1 cut(s) 89
SspMI CTAG 1 cut(s) 168
StyD4I CCNGG 2 cut(s) 5, 129
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 188
TaqI TCGA 1 cut(s) 234
TasI AATT 3 cut(s) 29, 305, 329
TatI WGTACW 1 cut(s) 203
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 1 cut(s) 25
TseI GCWGC 2 cut(s) 134, 164
TspDTI ATGAA 1 cut(s) 393
TspRI CASTG 1 cut(s) 25
Vha464I CTTAAG 1 cut(s) 59
XceI RCATGY 1 cut(s) 403
XmiI GTMKAC 1 cut(s) 274
XspI CTAG 1 cut(s) 168
Zsp2I ATGCAT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.