RchiOBHm_Chr6g0246221

histone H2A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001504
Physical Location & Seq
Forward (+)
1967409 .. 1967994
586 bp
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UTR
Exon/CDS
Intron
PRQ22070

Sequence Viewer

Length: 258 bp
ATGTCCAGGTCAAGCAACGCTGGGCTTCAATTTCTGGTGGGTAGGATCGCCCAGTTTCTTAAGTCCGGCCAGTATGCCGAGCGTGTCGGCGCCAGAGCTCCGGTGTATCTTTCGGTTGTCCTTAAATACCTAGCTGCCGAGGTTTTGGAGCTTGCTGGCAACGCAGCTAGGGACAATAAGAAGAACCGTATTGTATCGAGTTGTACAATCTCAAATCAGCTATGGTTTTTTGTCGAACCAACCCTTCATACAATATAA

Protein Analysis

85

Amino Acids

9.39

Weight (kDa)

9.89

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 89
AclWI GGATC 1 cut(s) 53
AcoI YGGCCR 1 cut(s) 67
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 1 cut(s) 205
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 1 cut(s) 29
AjnI CCWGG 1 cut(s) 5
AluBI AGCT 5 cut(s) 98, 134, 151, 167, 220
AluI AGCT 5 cut(s) 98, 134, 151, 167, 220
Alw21I GWGCWC 1 cut(s) 100
AlwI GGATC 1 cut(s) 53
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 2 cut(s) 134, 164
AspLEI GCGC 1 cut(s) 92
BanI GGYRCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 100
BbvI GCAGC 2 cut(s) 121, 176
BciT130I CCWGG 1 cut(s) 7
BfaI CTAG 2 cut(s) 131, 168
BfoI RGCGCY 1 cut(s) 93
BfrI CTTAAG 1 cut(s) 59
BisI GCNGC 2 cut(s) 135, 165
BlsI GCNGC 2 cut(s) 136, 166
Bme1390I CCNGG 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 7
BmrI ACTGGG 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 100
Bse1I ACTGG 2 cut(s) 52, 70
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 138
BseNI ACTGG 2 cut(s) 52, 70
BseXI GCAGC 2 cut(s) 121, 176
BseYI CCCAGC 1 cut(s) 20
BshFI GGCC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 100
BsiSI CCGG 2 cut(s) 66, 101
BslFI GGGAC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 100
Bsp1407I TGTACA 1 cut(s) 203
Bsp143I GATC 1 cut(s) 45
BspANI GGCC 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 91
BspPI GGATC 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 89
BspTI CTTAAG 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 203
BsrI ACTGG 2 cut(s) 52, 70
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 45
BssNI GRCGYC 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 90
BstAFI CTTAAG 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 153, 157
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstV1I GCAGC 2 cut(s) 121, 176
BsuRI GGCC 1 cut(s) 69
Cac8I GCNNGC 2 cut(s) 153, 157
CfoI GCGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 204
CviJI RGCY 7 cut(s) 25, 69, 98, 134, 151, 167, 220
CviKI_1 RGCY 7 cut(s) 25, 69, 98, 134, 151, 167, 220
CviQI GTAC 1 cut(s) 204
DinI GGCGCC 1 cut(s) 91
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
EaeI YGGCCR 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 5
EcoT38I GRGCYC 1 cut(s) 100
EgeI GGCGCC 1 cut(s) 91
EheI GGCGCC 1 cut(s) 91
FaiI YATR 4 cut(s) 75, 223, 249, 256
FaqI GGGAC 1 cut(s) 185
Fnu4HI GCNGC 2 cut(s) 135, 165
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 2 cut(s) 135, 165
FspBI CTAG 2 cut(s) 131, 168
GlaI GCGC 1 cut(s) 91
GluI GCNGC 2 cut(s) 135, 165
GsaI CCCAGC 1 cut(s) 24
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 1 cut(s) 69
HapII CCGG 2 cut(s) 66, 101
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 90
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HpaII CCGG 2 cut(s) 66, 101
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
Hsp92I GRCGYC 1 cut(s) 90
HspAI GCGC 1 cut(s) 90
KasI GGCGCC 1 cut(s) 89
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 103, 148
LpnPI CCDG 9 cut(s) 6, 19, 20, 65, 79, 83, 106, 114, 141
Lsp1109I GCAGC 2 cut(s) 121, 176
MaeI CTAG 2 cut(s) 131, 168
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 100
MluCI AATT 1 cut(s) 29
Mly113I GGCGCC 1 cut(s) 90
MnlI CCTC 1 cut(s) 133
MseI TTAA 2 cut(s) 60, 123
MspCI CTTAAG 1 cut(s) 59
MspI CCGG 2 cut(s) 66, 101
MspR9I CCNGG 1 cut(s) 7
MvaI CCWGG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 161
NarI GGCGCC 1 cut(s) 90
NdeII GATC 1 cut(s) 45
NlaIV GGNNCC 1 cut(s) 91
NmeAIII GCCGAG 2 cut(s) 103, 163
PkrI GCNGC 2 cut(s) 136, 166
PluTI GGCGCC 1 cut(s) 93
Psp124BI GAGCTC 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 5
PspFI CCCAGC 1 cut(s) 20
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 91
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SacI GAGCTC 1 cut(s) 100
SaqAI TTAA 2 cut(s) 60, 123
SatI GCNGC 2 cut(s) 135, 165
Sau3AI GATC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 1 cut(s) 100
SetI ASST 8 cut(s) 11, 100, 132, 136, 144, 153, 169, 222
SfoI GGCGCC 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 1 cut(s) 29
SspDI GGCGCC 1 cut(s) 89
SspMI CTAG 2 cut(s) 131, 168
SstI GAGCTC 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 5
TaaI ACNGT 1 cut(s) 188
TaqI TCGA 2 cut(s) 197, 234
TasI AATT 1 cut(s) 29
TatI WGTACW 1 cut(s) 203
Tru1I TTAA 2 cut(s) 60, 123
Tru9I TTAA 2 cut(s) 60, 123
TseI GCWGC 2 cut(s) 134, 164
TspDTI ATGAA 1 cut(s) 236
Vha464I CTTAAG 1 cut(s) 59
XspI CTAG 2 cut(s) 131, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.