Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001504

Physical Location & Seq

Genomic Coordinates Forward (+)

41456446 .. 41457040

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G018680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGTCCAGGGGAAGCAATGCTGGGCTTCAATTTCCGGTGAGTAAGATCGCCCAGTTTCGTAAGTCCGGCCAGTACGCCGAGCATGTCGGCGCCGGAGCTCCGGTGTATGTTTCGGTTGTCCTTGAATACCTGGCTGCTAAGGTTTTGGAGCTTGCTGGCAACGTAGCTAGGGACAACAAGAAGAACTGTATTGTACCGAGGTGTACAATCTCAAATCAGCTATGGTTTTTTGTCGAACCAACCCTTCGTACTATATACTCACAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

89

Amino Acids

9.84

Weight (kDa)

9.56

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51060 AT3G20670 AT4G27230 AT4G27230 AT5G54640
fragaria_vesca	FvH4_3g02940 FvH4_3g21650
malus_domestica	MD03G1213800.v1.1 MD03G1238000.v1.1 MD05G1335800.v1.1 MD10G1311400.v1.1
prunus_persica	Prupe.4G029500_v2.0.a1 Prupe.4G200700_v2.0.a1
pyrus_communis	pycom03g16220 pycom05g30720 pycom10g26260 pycom11g20100
rosa_chinensis	RchiOBHm_Chr1g0369691 RchiOBHm_Chr5g0004551 RchiOBHm_Chr5g0031581 RchiOBHm_Chr5g0037131 RchiOBHm_Chr5g0054271 RchiOBHm_Chr6g0246221 RchiOBHm_Chr6g0272401
rosa_laevigata	RLG00000031239 RLG00000033752
rosa_multiflora	Rmu_co8073734.1_g000001 Rmu_sc0002354.1_g000017 Rmu_sc0003758.1_g000011 Rmu_sc0004802.1_g000002 Rmu_sc0018628.1_g000004 Rmu_sc0042798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043850 Rroxscaffold_1G00070980
rosa_rugosa	Rorug04G0412200 Rorug05G0160900 Rorug05G0310600 Rorug05G0519700
rosa_samantha	Rh4BG384100 Rh4CG398800 Rh5BG039700 Rh5BG254500 Rh5CG043400 Rh5CG287000 Rh5DG039200 Rh5DG262900 Rh6AG354100 Rh6CG397000
rosa_wichuraiana	Rw4G018680 Rw5G003870 Rw5G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	4 cut(s)	74, 195, 205, 250
AgsI	TTSAA	2 cut(s)	29, 125
AjnI	CCWGG	2 cut(s)	5, 129
AluBI	AGCT	4 cut(s)	98, 151, 167, 220
AluI	AGCT	4 cut(s)	98, 151, 167, 220
Alw21I	GWGCWC	1 cut(s)	100
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	121
BciT130I	CCWGG	2 cut(s)	7, 131
BfaI	CTAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	2 cut(s)	7, 131
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	2 cut(s)	7, 131
BmrI	ACTGGG	1 cut(s)	46
BmuI	ACTGGG	1 cut(s)	46
Bpu10I	CCTNAGC	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	6, 197
BsaWI	WCCGGW	2 cut(s)	34, 100
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bse1I	ACTGG	2 cut(s)	52, 70
Bse3DI	GCAATG	1 cut(s)	22
BseBI	CCWGG	2 cut(s)	7, 131
BseDI	CCNNGG	2 cut(s)	6, 197
BseMI	GCAATG	1 cut(s)	22
BseNI	ACTGG	2 cut(s)	52, 70
BseXI	GCAGC	1 cut(s)	121
BseYI	CCCAGC	1 cut(s)	20
BshFI	GGCC	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	100
BsiSI	CCGG	4 cut(s)	35, 66, 93, 101
BslFI	GGGAC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp1407I	TGTACA	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	22
BsrGI	TGTACA	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	52, 70
BssECI	CCNNGG	2 cut(s)	6, 197
BssMI	GATC	1 cut(s)	45
BssNI	GRCGYC	1 cut(s)	90
Bst2UI	CCWGG	2 cut(s)	7, 131
Bst4CI	ACNGT	1 cut(s)	188
BstACI	GRCGYC	1 cut(s)	90
BstAUI	TGTACA	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	153, 157
BstDEI	CTNAG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	45
BstNI	CCWGG	2 cut(s)	7, 131
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	2 cut(s)	5, 129
BstV1I	GCAGC	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	69
Cac8I	GCNNGC	2 cut(s)	153, 157
CfoI	GCGC	1 cut(s)	92
Csp6I	GTAC	4 cut(s)	73, 194, 204, 249
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	7 cut(s)	25, 69, 98, 134, 151, 167, 220
CviKI_1	RGCY	7 cut(s)	25, 69, 98, 134, 151, 167, 220
CviQI	GTAC	4 cut(s)	73, 194, 204, 249
DdeI	CTNAG	1 cut(s)	138
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	5, 129
EcoT38I	GRGCYC	1 cut(s)	100
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
FaeI	CATG	1 cut(s)	86
FaiI	YATR	5 cut(s)	84, 108, 223, 254, 256
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	135
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	135
GsaI	CCCAGC	1 cut(s)	24
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	4 cut(s)	35, 66, 93, 101
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HpaII	CCGG	4 cut(s)	35, 66, 93, 101
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	204
Hpy8I	GTNNAC	1 cut(s)	204
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	1 cut(s)	162
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	86
HspAI	GCGC	1 cut(s)	90
KasI	GGCGCC	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	45
LmnI	GCTCC	3 cut(s)	95, 103, 148
Lsp1109I	GCAGC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	162
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	1 cut(s)	29
Mly113I	GGCGCC	1 cut(s)	90
MnlI	CCTC	1 cut(s)	192
MspI	CCGG	4 cut(s)	35, 66, 93, 101
MspR9I	CCNGG	2 cut(s)	7, 131
MvaI	CCWGG	2 cut(s)	7, 131
NarI	GGCGCC	1 cut(s)	90
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	1 cut(s)	86
NlaIV	GGNNCC	1 cut(s)	91
NmeAIII	GCCGAG	1 cut(s)	103
NspI	RCATGY	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	136
PluTI	GGCGCC	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	100
Psp6I	CCWGG	2 cut(s)	5, 129
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	2 cut(s)	5, 129
PspN4I	GGNNCC	1 cut(s)	91
RsaI	GTAC	4 cut(s)	74, 195, 205, 250
RsaNI	GTAC	4 cut(s)	73, 194, 204, 249
SacI	GAGCTC	1 cut(s)	100
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	1 cut(s)	45
ScrFI	CCNGG	2 cut(s)	7, 131
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	8 cut(s)	100, 132, 144, 153, 165, 169, 203, 222
SfoI	GGCGCC	1 cut(s)	91
Sse9I	AATT	1 cut(s)	29
SspDI	GGCGCC	1 cut(s)	89
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	100
StyD4I	CCNGG	2 cut(s)	5, 129
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	29
TatI	WGTACW	1 cut(s)	203
TseI	GCWGC	1 cut(s)	134
XceI	RCATGY	1 cut(s)	86
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.