Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001504

Physical Location & Seq

Genomic Coordinates Reverse (-)

22633176 .. 22634338

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g20100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCGGGTCGTGGGAAGGCTTTGGGATCCGGAGCCGCTAAGAAGGCCACATCGCGGTCCAGCAAGGCCGGTCTGCAATTTCCGGTCGGTCGTATTGCCCGTTTCCTGAAAGCCGGAAAGTACGCCGAGCGTGTCGGTGCCGGAGCTCCGGTCTACCTCGCAGCTGTCCTTGAATACCTTGCCGCTGAGGTTCTGGAATTGGCTGGCAATGCAGCAAGAGACAACAAGAAGACTCGCATTGTGCCGCGCCACATTCAGCTAGCTGTGCGGAATGACGAGGAGCTCAGCAAGCTTCTTGGGGATGTGACAATTGCAAATGGTGGTGTGATGCCCAACATTCACAACCTTCTGCTCCCAAAGAAGACCGGTGCCTCCTCCAAGAACGTCGGTGGTGATGACGACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

136

Amino Acids

14.05

Weight (kDa)

10.05

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	14 - 90	4.5e-14	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	93 - 127	2.5e-19	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51060 AT3G20670 AT4G27230 AT4G27230 AT5G54640
fragaria_vesca	FvH4_3g02940 FvH4_3g21650
malus_domestica	MD03G1213800.v1.1 MD03G1238000.v1.1 MD05G1335800.v1.1 MD10G1311400.v1.1
prunus_persica	Prupe.4G029500_v2.0.a1 Prupe.4G200700_v2.0.a1
pyrus_communis	pycom03g16220 pycom05g30720 pycom10g26260 pycom11g20100
rosa_chinensis	RchiOBHm_Chr1g0369691 RchiOBHm_Chr5g0004551 RchiOBHm_Chr5g0031581 RchiOBHm_Chr5g0037131 RchiOBHm_Chr5g0054271 RchiOBHm_Chr6g0246221 RchiOBHm_Chr6g0272401
rosa_laevigata	RLG00000031239 RLG00000033752
rosa_multiflora	Rmu_co8073734.1_g000001 Rmu_sc0002354.1_g000017 Rmu_sc0003758.1_g000011 Rmu_sc0004802.1_g000002 Rmu_sc0018628.1_g000004 Rmu_sc0042798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043850 Rroxscaffold_1G00070980
rosa_rugosa	Rorug04G0412200 Rorug05G0160900 Rorug05G0310600 Rorug05G0519700
rosa_samantha	Rh4BG384100 Rh4CG398800 Rh5BG039700 Rh5BG254500 Rh5CG043400 Rh5CG287000 Rh5DG039200 Rh5DG262900 Rh6AG354100 Rh6CG397000
rosa_wichuraiana	Rw4G018680 Rw5G003870 Rw5G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	137, 368
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	2 cut(s)	55, 247
AccIII	TCCGGA	1 cut(s)	29
AciI	CCGC	6 cut(s)	5, 36, 55, 183, 245, 268
AclWI	GGATC	2 cut(s)	21, 34
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgeI	ACCGGT	1 cut(s)	365
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	6 cut(s)	146, 164, 259, 263, 283, 292
AluI	AGCT	6 cut(s)	146, 164, 259, 263, 283, 292
Alw21I	GWGCWC	2 cut(s)	148, 285
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	2 cut(s)	21, 34
Aor13HI	TCCGGA	1 cut(s)	29
AoxI	GGCC	2 cut(s)	45, 66
ApeKI	GCWGC	2 cut(s)	161, 212
AsiGI	ACCGGT	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	404
AsuNHI	GCTAGC	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	57
BamHI	GGATCC	1 cut(s)	26
BanI	GGYRCC	2 cut(s)	137, 368
BanII	GRGCYC	2 cut(s)	148, 285
BbsI	GAAGAC	2 cut(s)	236, 368
Bbv12I	GWGCWC	2 cut(s)	148, 285
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	173, 224
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	260
BisI	GCNGC	5 cut(s)	36, 162, 183, 213, 245
BlpI	GCTNAGC	1 cut(s)	284
BlsI	GCNGC	5 cut(s)	37, 163, 184, 214, 246
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	4 cut(s)	28, 34, 139, 370
BmsI	GCATC	1 cut(s)	318
BmtI	GCTAGC	1 cut(s)	263
BpiI	GAAGAC	2 cut(s)	236, 368
Bpu10I	CCTNAGC	1 cut(s)	186
Bpu1102I	GCTNAGC	1 cut(s)	284
BsaWI	WCCGGW	4 cut(s)	29, 82, 148, 365
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse118I	RCCGGY	2 cut(s)	68, 365
Bse3DI	GCAATG	1 cut(s)	214
BseAI	TCCGGA	1 cut(s)	29
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	2 cut(s)	177, 298
BseRI	GAGGAG	2 cut(s)	293, 364
BseXI	GCAGC	2 cut(s)	173, 224
Bsh1236I	CGCG	2 cut(s)	55, 247
Bsh1285I	CGRYCG	2 cut(s)	87, 91
BshFI	GGCC	2 cut(s)	47, 68
BshNI	GGYRCC	2 cut(s)	137, 368
BshTI	ACCGGT	1 cut(s)	365
BsiEI	CGRYCG	2 cut(s)	87, 91
BsiHKAI	GWGCWC	2 cut(s)	148, 285
BsiSI	CCGG	7 cut(s)	30, 69, 83, 114, 141, 149, 366
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	213
BsnI	GGCC	2 cut(s)	47, 68
Bsp1286I	GDGCHC	2 cut(s)	148, 285
Bsp13I	TCCGGA	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	26
Bsp1720I	GCTNAGC	1 cut(s)	284
BspACI	CCGC	6 cut(s)	5, 36, 55, 183, 245, 268
BspANI	GGCC	2 cut(s)	47, 68
BspCNI	CTCAG	2 cut(s)	178, 297
BspEI	TCCGGA	1 cut(s)	29
BspFNI	CGCG	2 cut(s)	55, 247
BspLI	GGNNCC	4 cut(s)	28, 34, 139, 370
BspOI	GCTAGC	1 cut(s)	263
BspPI	GGATC	2 cut(s)	21, 34
BspT107I	GGYRCC	2 cut(s)	137, 368
BsrDI	GCAATG	1 cut(s)	214
BsrFI	RCCGGY	2 cut(s)	68, 365
BssAI	RCCGGY	2 cut(s)	68, 365
BssMI	GATC	1 cut(s)	26
BstC8I	GCNNGC	3 cut(s)	205, 261, 290
BstDEI	CTNAG	4 cut(s)	39, 186, 284, 405
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	2 cut(s)	55, 247
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	26
BstMCI	CGRYCG	2 cut(s)	87, 91
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 209, 265, 289
BstUI	CGCG	2 cut(s)	55, 247
BstV1I	GCAGC	2 cut(s)	173, 224
BstV2I	GAAGAC	2 cut(s)	236, 368
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	47, 68
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	307
Cac8I	GCNNGC	3 cut(s)	205, 261, 290
CfoI	GCGC	1 cut(s)	249
Cfr10I	RCCGGY	2 cut(s)	68, 365
Cfr13I	GGNCC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	121
CspAI	ACCGGT	1 cut(s)	365
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	4 cut(s)	39, 186, 284, 405
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
Ecl136II	GAGCTC	2 cut(s)	146, 283
Eco24I	GRGCYC	2 cut(s)	148, 285
Eco47I	GGWCC	1 cut(s)	57
Eco53kI	GAGCTC	2 cut(s)	146, 283
EcoICRI	GAGCTC	2 cut(s)	146, 283
EcoT38I	GRGCYC	2 cut(s)	148, 285
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	5 cut(s)	36, 162, 183, 213, 245
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	2 cut(s)	148, 285
Fsp4HI	GCNGC	5 cut(s)	36, 162, 183, 213, 245
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	5 cut(s)	36, 162, 183, 213, 245
HaeIII	GGCC	2 cut(s)	47, 68
HapII	CCGG	7 cut(s)	30, 69, 83, 114, 141, 149, 366
HhaI	GCGC	1 cut(s)	249
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	2 cut(s)	232, 401
HpaII	CCGG	7 cut(s)	30, 69, 83, 114, 141, 149, 366
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188III	TCNNGA	3 cut(s)	30, 106, 194
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	3 cut(s)	10, 37, 356
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	3 cut(s)	76, 212, 314
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 209, 265, 289
HpyF3I	CTNAG	4 cut(s)	39, 186, 284, 405
HpySE526I	ACGT	1 cut(s)	384
HspAI	GCGC	1 cut(s)	247
Kpn2I	TCCGGA	1 cut(s)	29
Kzo9I	GATC	1 cut(s)	26
LmnI	GCTCC	5 cut(s)	32, 143, 151, 280, 357
Lsp1109I	GCAGC	2 cut(s)	173, 224
LweI	GCATC	1 cut(s)	318
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	2 cut(s)	241, 373
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	2 cut(s)	148, 285
MluCI	AATT	3 cut(s)	77, 197, 309
MlyI	GAGTC	2 cut(s)	226, 395
MnlI	CCTC	5 cut(s)	167, 181, 271, 382, 385
MroI	TCCGGA	1 cut(s)	29
MspA1I	CMGCKG	2 cut(s)	164, 185
MspI	CCGG	7 cut(s)	30, 69, 83, 114, 141, 149, 366
MunI	CAATTG	1 cut(s)	309
MvnI	CGCG	2 cut(s)	55, 247
MwoI	GCNNNNNNNGC	4 cut(s)	44, 209, 265, 289
NdeII	GATC	1 cut(s)	26
NheI	GCTAGC	1 cut(s)	259
NlaIV	GGNNCC	4 cut(s)	28, 34, 139, 370
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PinAI	ACCGGT	1 cut(s)	365
PkrI	GCNGC	5 cut(s)	37, 163, 184, 214, 246
PleI	GAGTC	2 cut(s)	226, 395
PpsI	GAGTC	2 cut(s)	226, 395
Psp124BI	GAGCTC	2 cut(s)	148, 285
PspN4I	GGNNCC	4 cut(s)	28, 34, 139, 370
PspPI	GGNCC	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	164
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacI	GAGCTC	2 cut(s)	148, 285
SatI	GCNGC	5 cut(s)	36, 162, 183, 213, 245
Sau3AI	GATC	1 cut(s)	26
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	2 cut(s)	226, 395
SduI	GDGCHC	2 cut(s)	148, 285
SfaNI	GCATC	1 cut(s)	318
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	3 cut(s)	77, 197, 309
SsiI	CCGC	6 cut(s)	5, 36, 55, 183, 245, 268
SspMI	CTAG	1 cut(s)	260
SstI	GAGCTC	2 cut(s)	148, 285
TaiI	ACGT	1 cut(s)	387
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	3 cut(s)	77, 197, 309
TauI	GCSGC	3 cut(s)	38, 185, 247
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	2 cut(s)	161, 212
Tsp45I	GTSAC	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	57
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.