Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001504

Physical Location & Seq

Genomic Coordinates Reverse (-)

14966547 .. 14968524

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0160900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGAATCCCATAGTTTCTTTGCTCTTTGTCCTCCTCGTTGTTGTTCAGTTGAGTCCAACCTTATCATACCCAGCAGATGATCACCATCATTACGACGACGATAATAATGAATCACCTGAGCACTGGAAGGGTGCCACACCTCTAACGGTTCCGACCATTTTAGAGAACTTGCCTTTTGGGGATTTTCTCTCCTTTTCTCACTACCACAGGAGTTGTCCAGACCTTGAAGGCATTATCAATAGGAAATTGAAGCAATGGCTTAAGCAGGACTACACCATAGCTGCTAGTCTCATGAGGTTGCACTTCCATGACTGTGGCATCAGGGGATGTGATGCCTCCATCTTATTAAACCATGAGGGAAGTGAGAGGACTGCCTTGGCCAGCAAGACACTGAGAGGGTTTGAAGTGATAGATGATATCAAAGCAGAGGTCGAGAAGAAGTGCCCCAAAACAGTATCTTGTGCAGATATCTTGACTGCAGCTACAAGAGATGCCACTGTTATGGTCGGCGGTCCATACTGGATGGTCCCCTATGGTCGGAAGGATGGGCGAGTTTCAATTGCCAAGGAAGCTGAATGGGTGCCAATGGGTCATGAAAACATTACTGCTTTGGTAGAGTTTTTCCAATCTCAGGGCTTGAATGTGCTTGACTTGGTTGTTCTCTCAGGGGCACACACCATAGGAAGGTCTTCATGTGCTTCCATACAAAACAGGCTCTTTAACTTCGATGGATATGGGAACTCTGATCCATCCATTGATGAAAAATACTTGAACTTCTTGAAAAGAAAATGCAGATGGGGATCAGACTATGTTGACCTTGATGCTACAACTCCAAAAACCTTTGACACTGCATACTACTCGAATCTTCAGAGGAAGATGGGACTTCTCAAAACTGATCAATTGTTGTATTCTGATACAAGGACTTCACCACTTGTCACTGCTTTAGCTCACCAGCCCGCAGTCTTCTACCACCAGTTTGGAGTCTCCATGGCCAAACTGGGGAATGTTAAAGTCCTCACCGGCCAAGATGAAGGCGAAATTCGAACCAACTGCAATCTTGTCAACTCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

357

Amino Acids

39.95

Weight (kDa)

6.0

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	80 - 317	3.5e-81	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51060 AT3G20670 AT4G27230 AT4G27230 AT5G54640
fragaria_vesca	FvH4_3g02940 FvH4_3g21650
malus_domestica	MD03G1213800.v1.1 MD03G1238000.v1.1 MD05G1335800.v1.1 MD10G1311400.v1.1
prunus_persica	Prupe.4G029500_v2.0.a1 Prupe.4G200700_v2.0.a1
pyrus_communis	pycom03g16220 pycom05g30720 pycom10g26260 pycom11g20100
rosa_chinensis	RchiOBHm_Chr1g0369691 RchiOBHm_Chr5g0004551 RchiOBHm_Chr5g0031581 RchiOBHm_Chr5g0037131 RchiOBHm_Chr5g0054271 RchiOBHm_Chr6g0246221 RchiOBHm_Chr6g0272401
rosa_laevigata	RLG00000031239 RLG00000033752
rosa_multiflora	Rmu_co8073734.1_g000001 Rmu_sc0002354.1_g000017 Rmu_sc0003758.1_g000011 Rmu_sc0004802.1_g000002 Rmu_sc0018628.1_g000004 Rmu_sc0042798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043850 Rroxscaffold_1G00070980
rosa_rugosa	Rorug04G0412200 Rorug05G0160900 Rorug05G0310600 Rorug05G0519700
rosa_samantha	Rh4BG384100 Rh4CG398800 Rh5BG039700 Rh5BG254500 Rh5CG043400 Rh5CG287000 Rh5DG039200 Rh5DG262900 Rh6AG354100 Rh6CG397000
rosa_wichuraiana	Rw4G018680 Rw5G003870 Rw5G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	131, 580
AciI	CCGC	2 cut(s)	510, 957
AclWI	GGATC	2 cut(s)	740, 808
AcoI	YGGCCR	3 cut(s)	378, 990, 1021
AcsI	RAATTY	1 cut(s)	1038
AcuI	CTGAAG	1 cut(s)	851
AfiI	CCNNNNNNNGG	4 cut(s)	537, 631, 684, 999
AflII	CTTAAG	1 cut(s)	260
AgsI	TTSAA	7 cut(s)	227, 250, 404, 558, 640, 772, 781
AluBI	AGCT	4 cut(s)	281, 482, 572, 947
AluI	AGCT	4 cut(s)	281, 482, 572, 947
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	2 cut(s)	293, 988
AlwI	GGATC	2 cut(s)	740, 808
AoxI	GGCC	3 cut(s)	378, 990, 1021
ApeKI	GCWGC	2 cut(s)	281, 479
ApoI	RAATTY	1 cut(s)	1038
ArsI	GACNNNNNNTTYG	2 cut(s)	414, 446
Asp700I	GAANNNNTTC	1 cut(s)	688
AspS9I	GGNCC	2 cut(s)	512, 526
AsuHPI	GGTGA	5 cut(s)	74, 105, 918, 941, 1009
AsuII	TTCGAA	1 cut(s)	1042
AvaII	GGWCC	2 cut(s)	512, 526
BaeGI	GKGCMC	2 cut(s)	446, 673
BalI	TGGCCA	2 cut(s)	380, 992
BanI	GGYRCC	2 cut(s)	131, 580
BbsI	GAAGAC	2 cut(s)	681, 955
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	268, 491
BccI	CCATC	8 cut(s)	93, 347, 517, 539, 722, 757, 789, 871
BcgI	CGANNNNNNTGC	4 cut(s)	840, 874, 1032, 1066
BclI	TGATCA	2 cut(s)	79, 895
BcoDI	GTCTC	2 cut(s)	293, 988
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	477
BfrI	CTTAAG	1 cut(s)	260
BisI	GCNGC	2 cut(s)	282, 480
BlsI	GCNGC	2 cut(s)	283, 481
Bme18I	GGWCC	2 cut(s)	512, 526
BmgT120I	GGNCC	2 cut(s)	512, 526
BmiI	GGNNCC	4 cut(s)	133, 150, 528, 582
BmrI	ACTGGG	1 cut(s)	1007
BmsI	GCATC	4 cut(s)	322, 327, 481, 811
BmuI	ACTGGG	1 cut(s)	1007
BpiI	GAAGAC	2 cut(s)	681, 955
Bpu10I	CCTNAGC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	1042
BsaBI	GATNNNNATC	2 cut(s)	84, 799
BsaJI	CCNNGG	3 cut(s)	375, 564, 987
Bsc4I	CCNNNNNNNGG	4 cut(s)	537, 631, 684, 999
Bse118I	RCCGGY	1 cut(s)	1019
Bse1I	ACTGG	4 cut(s)	128, 524, 973, 1002
Bse3DI	GCAATG	1 cut(s)	260
Bse8I	GATNNNNATC	2 cut(s)	84, 799
BseDI	CCNNGG	3 cut(s)	375, 564, 987
BseGI	GGATG	4 cut(s)	332, 528, 550, 749
BseJI	GATNNNNATC	2 cut(s)	84, 799
BseLI	CCNNNNNNNGG	4 cut(s)	537, 631, 684, 999
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	4 cut(s)	108, 383, 644, 678
BseNI	ACTGG	4 cut(s)	128, 524, 973, 1002
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	2 cut(s)	446, 673
BseXI	GCAGC	2 cut(s)	268, 491
BseYI	CCCAGC	1 cut(s)	70
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	3 cut(s)	380, 992, 1023
BshNI	GGYRCC	2 cut(s)	131, 580
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	1020
BslFI	GGGAC	2 cut(s)	512, 894
BslI	CCNNNNNNNGG	4 cut(s)	537, 631, 684, 999
BsmAI	GTCTC	2 cut(s)	293, 988
BsmFI	GGGAC	2 cut(s)	512, 894
BsnI	GGCC	3 cut(s)	380, 992, 1023
Bsp119I	TTCGAA	1 cut(s)	1042
Bsp1286I	GDGCHC	3 cut(s)	123, 446, 673
Bsp143I	GATC	4 cut(s)	79, 745, 800, 895
Bsp19I	CCATGG	1 cut(s)	987
BspACI	CCGC	2 cut(s)	510, 957
BspANI	GGCC	3 cut(s)	380, 992, 1023
BspCNI	CTCAG	4 cut(s)	109, 384, 643, 677
BspHI	TCATGA	2 cut(s)	291, 592
BspLI	GGNNCC	4 cut(s)	133, 150, 528, 582
BspMAI	CTGCAG	1 cut(s)	481
BspPI	GGATC	2 cut(s)	740, 808
BspT104I	TTCGAA	1 cut(s)	1042
BspT107I	GGYRCC	2 cut(s)	131, 580
BspTI	CTTAAG	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	1019
BsrI	ACTGG	4 cut(s)	128, 524, 973, 1002
BssAI	RCCGGY	1 cut(s)	1019
BssECI	CCNNGG	3 cut(s)	375, 564, 987
BssMI	GATC	4 cut(s)	79, 745, 800, 895
BssT1I	CCWWGG	3 cut(s)	375, 564, 987
Bst4CI	ACNGT	4 cut(s)	148, 314, 454, 499
BstAFI	CTTAAG	1 cut(s)	260
BstBI	TTCGAA	1 cut(s)	1042
BstC8I	GCNNGC	2 cut(s)	382, 957
BstDEI	CTNAG	4 cut(s)	117, 392, 630, 664
BstDSI	CCRYGG	1 cut(s)	987
BstF5I	GGATG	4 cut(s)	332, 528, 550, 749
BstKTI	GATC	4 cut(s)	82, 748, 803, 898
BstMAI	GTCTC	2 cut(s)	293, 988
BstMBI	GATC	4 cut(s)	79, 745, 800, 895
BstMWI	GCNNNNNNNGC	1 cut(s)	569
BstSFI	CTRYAG	1 cut(s)	477
BstSLI	GKGCMC	2 cut(s)	446, 673
BstV1I	GCAGC	2 cut(s)	268, 491
BstV2I	GAAGAC	2 cut(s)	681, 955
BstXI	CCANNNNNNTGG	3 cut(s)	314, 502, 977
BsuRI	GGCC	3 cut(s)	380, 992, 1023
BtgI	CCRYGG	1 cut(s)	987
BtsCI	GGATG	4 cut(s)	332, 528, 550, 749
BtsI	GCAGTG	2 cut(s)	846, 936
BtsIMutI	CAGTG	5 cut(s)	121, 389, 495, 846, 936
Cac8I	GCNNGC	2 cut(s)	382, 957
CciI	TCATGA	2 cut(s)	291, 592
Cfr10I	RCCGGY	1 cut(s)	1019
Cfr13I	GGNCC	2 cut(s)	512, 526
CspCI	CAANNNNNGTGG	2 cut(s)	194, 229
CviAII	CATG	6 cut(s)	292, 308, 353, 593, 693, 988
DdeI	CTNAG	4 cut(s)	117, 392, 630, 664
DpnI	GATC	4 cut(s)	81, 747, 802, 897
DpnII	GATC	4 cut(s)	79, 745, 800, 895
EaeI	YGGCCR	3 cut(s)	378, 990, 1021
Eco130I	CCWWGG	3 cut(s)	375, 564, 987
Eco32I	GATATC	2 cut(s)	418, 469
Eco47I	GGWCC	2 cut(s)	512, 526
Eco57I	CTGAAG	1 cut(s)	851
EcoRV	GATATC	2 cut(s)	418, 469
EcoT14I	CCWWGG	3 cut(s)	375, 564, 987
ErhI	CCWWGG	3 cut(s)	375, 564, 987
FaeI	CATG	6 cut(s)	295, 311, 356, 596, 696, 991
FaqI	GGGAC	2 cut(s)	512, 894
FatI	CATG	6 cut(s)	291, 307, 352, 592, 692, 987
FauI	CCCGC	1 cut(s)	964
FbaI	TGATCA	2 cut(s)	79, 895
Fnu4HI	GCNGC	2 cut(s)	282, 480
FokI	GGATG	4 cut(s)	339, 535, 557, 736
Fsp4HI	GCNGC	2 cut(s)	282, 480
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	2 cut(s)	282, 480
GsaI	CCCAGC	1 cut(s)	74
HaeIII	GGCC	3 cut(s)	380, 992, 1023
HapII	CCGG	1 cut(s)	1020
Hin1II	CATG	6 cut(s)	295, 311, 356, 596, 696, 991
HincII	GTYRAC	2 cut(s)	814, 1063
HindII	GTYRAC	2 cut(s)	814, 1063
HinfI	GANTC	5 cut(s)	4, 52, 110, 862, 981
HpaII	CCGG	1 cut(s)	1020
HphI	GGTGA	5 cut(s)	74, 105, 918, 941, 1009
Hpy166II	GTNNAC	2 cut(s)	814, 1063
Hpy188I	TCNGA	6 cut(s)	153, 540, 745, 805, 870, 913
Hpy188III	TCNNGA	6 cut(s)	218, 292, 433, 472, 593, 778
Hpy8I	GTNNAC	2 cut(s)	814, 1063
Hpy99I	CGWCG	2 cut(s)	98, 101
HpyAV	CCTTC	5 cut(s)	121, 221, 535, 678, 1025
HpyCH4III	ACNGT	4 cut(s)	148, 314, 454, 499
HpyCH4V	TGCA	6 cut(s)	301, 464, 479, 792, 851, 1053
HpyF10VI	GCNNNNNNNGC	1 cut(s)	569
HpyF3I	CTNAG	4 cut(s)	117, 392, 630, 664
Hsp92II	CATG	6 cut(s)	295, 311, 356, 596, 696, 991
Ksp22I	TGATCA	2 cut(s)	79, 895
Kzo9I	GATC	4 cut(s)	79, 745, 800, 895
Lsp1109I	GCAGC	2 cut(s)	268, 491
LweI	GCATC	4 cut(s)	322, 327, 481, 811
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	934
MalI	GATC	4 cut(s)	81, 747, 802, 897
MboI	GATC	4 cut(s)	79, 745, 800, 895
MboII	GAAGA	5 cut(s)	448, 681, 857, 886, 955
MfeI	CAATTG	2 cut(s)	558, 899
MhlI	GDGCHC	3 cut(s)	123, 446, 673
MlsI	TGGCCA	2 cut(s)	380, 992
MluCI	AATT	4 cut(s)	245, 558, 899, 1038
MluNI	TGGCCA	2 cut(s)	380, 992
MlyI	GAGTC	2 cut(s)	61, 990
MmeI	TCCRAC	3 cut(s)	80, 176, 518
Mox20I	TGGCCA	2 cut(s)	380, 992
MroXI	GAANNNNTTC	1 cut(s)	688
MscI	TGGCCA	2 cut(s)	380, 992
MseI	TTAA	4 cut(s)	261, 347, 720, 1008
MslI	CAYNNNNRTG	3 cut(s)	306, 312, 500
Msp20I	TGGCCA	2 cut(s)	380, 992
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	1 cut(s)	1020
MunI	CAATTG	2 cut(s)	558, 899
MwoI	GCNNNNNNNGC	1 cut(s)	569
NcoI	CCATGG	1 cut(s)	987
NdeII	GATC	4 cut(s)	79, 745, 800, 895
NlaIII	CATG	6 cut(s)	295, 311, 356, 596, 696, 991
NlaIV	GGNNCC	4 cut(s)	133, 150, 528, 582
NmuCI	GTSAC	1 cut(s)	934
NspV	TTCGAA	1 cut(s)	1042
PagI	TCATGA	2 cut(s)	291, 592
PdmI	GAANNNNTTC	1 cut(s)	688
PfeI	GAWTC	3 cut(s)	4, 110, 862
PkrI	GCNGC	2 cut(s)	283, 481
PleI	GAGTC	2 cut(s)	60, 989
PpsI	GAGTC	2 cut(s)	60, 989
PspFI	CCCAGC	1 cut(s)	70
PspN4I	GGNNCC	4 cut(s)	133, 150, 528, 582
PspPI	GGNCC	2 cut(s)	512, 526
PstI	CTGCAG	1 cut(s)	481
RseI	CAYNNNNRTG	3 cut(s)	306, 312, 500
SaqAI	TTAA	4 cut(s)	261, 347, 720, 1008
SatI	GCNGC	2 cut(s)	282, 480
Sau3AI	GATC	4 cut(s)	79, 745, 800, 895
Sau96I	GGNCC	2 cut(s)	512, 526
SchI	GAGTC	2 cut(s)	61, 990
SduI	GDGCHC	3 cut(s)	123, 446, 673
SfaNI	GCATC	4 cut(s)	322, 327, 481, 811
SfcI	CTRYAG	1 cut(s)	477
SfuI	TTCGAA	1 cut(s)	1042
SinI	GGWCC	2 cut(s)	512, 526
SmiMI	CAYNNNNRTG	3 cut(s)	306, 312, 500
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	4 cut(s)	245, 558, 899, 1038
SsiI	CCGC	2 cut(s)	510, 957
SspMI	CTAG	1 cut(s)	285
StyI	CCWWGG	3 cut(s)	375, 564, 987
TaaI	ACNGT	4 cut(s)	148, 314, 454, 499
TaqI	TCGA	4 cut(s)	432, 726, 860, 1042
TasI	AATT	4 cut(s)	245, 558, 899, 1038
TfiI	GAWTC	3 cut(s)	4, 110, 862
Tru1I	TTAA	4 cut(s)	261, 347, 720, 1008
Tru9I	TTAA	4 cut(s)	261, 347, 720, 1008
TscAI	CASTG	5 cut(s)	128, 396, 502, 853, 943
TseFI	GTSAC	1 cut(s)	934
TseI	GCWGC	2 cut(s)	281, 479
Tsp45I	GTSAC	1 cut(s)	934
TspDTI	ATGAA	6 cut(s)	17, 123, 609, 681, 774, 1044
TspRI	CASTG	5 cut(s)	128, 396, 502, 853, 943
Vha464I	CTTAAG	1 cut(s)	260
VpaK11BI	GGWCC	2 cut(s)	512, 526
XapI	RAATTY	1 cut(s)	1038
XcmI	CCANNNNNNNNNTGG	1 cut(s)	994
XmnI	GAANNNNTTC	1 cut(s)	688
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.