Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001504

Physical Location & Seq

Genomic Coordinates Reverse (-)

62526383 .. 62527786

Gene Structure 1404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00043850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCGGGTCGAGGCAAAGCTTTGGGATCTGGGGCGGCCAAGAAGGCCACGTCGCGGTCCAGCAAGGCCGGTCTTCAATTTCCCGTCGGGCGTATTGCTCGGTTCTTGAAGGCAGGGAAGTACGCCGAGCGAGTCGGTGCCGGAGCTCCGGTCTACCTCGCCGCCGTGCTTGAATACCTAGCCGCTGAGGTTCTGGAATTGGCTGGTAACGCGGCAAGAGACAACAAGAAGACTAGAATTGTGCCACGCCACATTCAGCTTGCTGTGCGAAATGATGAGGAGCTCAGCAAGCTTCTTGGAGATGTCACAATTGCAAATGGTGGTGTCATGCCCAACATTCACAACCTTCTGCTCCCAAAGAAGGCCGGCGGTTCCTCCAAGGCCGCAGCTGGTGATGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

134

Amino Acids

13.86

Weight (kDa)

10.05

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	14 - 90	4.4e-14	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	93 - 127	9.7e-19	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51060 AT3G20670 AT4G27230 AT4G27230 AT5G54640
fragaria_vesca	FvH4_3g02940 FvH4_3g21650
malus_domestica	MD03G1213800.v1.1 MD03G1238000.v1.1 MD05G1335800.v1.1 MD10G1311400.v1.1
prunus_persica	Prupe.4G029500_v2.0.a1 Prupe.4G200700_v2.0.a1
pyrus_communis	pycom03g16220 pycom05g30720 pycom10g26260 pycom11g20100
rosa_chinensis	RchiOBHm_Chr1g0369691 RchiOBHm_Chr5g0004551 RchiOBHm_Chr5g0031581 RchiOBHm_Chr5g0037131 RchiOBHm_Chr5g0054271 RchiOBHm_Chr6g0246221 RchiOBHm_Chr6g0272401
rosa_laevigata	RLG00000031239 RLG00000033752
rosa_multiflora	Rmu_co8073734.1_g000001 Rmu_sc0002354.1_g000017 Rmu_sc0003758.1_g000011 Rmu_sc0004802.1_g000002 Rmu_sc0018628.1_g000004 Rmu_sc0042798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043850 Rroxscaffold_1G00070980
rosa_rugosa	Rorug04G0412200 Rorug05G0160900 Rorug05G0310600 Rorug05G0519700
rosa_samantha	Rh4BG384100 Rh4CG398800 Rh5BG039700 Rh5BG254500 Rh5CG043400 Rh5CG287000 Rh5DG039200 Rh5DG262900 Rh6AG354100 Rh6CG397000
rosa_wichuraiana	Rw4G018680 Rw5G003870 Rw5G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	2 cut(s)	55, 212
AciI	CCGC	8 cut(s)	5, 35, 55, 162, 183, 212, 369, 384
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	1 cut(s)	36
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	54, 361
AgsI	TTSAA	3 cut(s)	77, 109, 173
AjiI	CACGTC	1 cut(s)	51
AluBI	AGCT	6 cut(s)	20, 146, 259, 283, 292, 389
AluI	AGCT	6 cut(s)	20, 146, 259, 283, 292, 389
Alw21I	GWGCWC	2 cut(s)	148, 285
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	5 cut(s)	36, 45, 66, 363, 381
ApeKI	GCWGC	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	2 cut(s)	148, 285
BbsI	GAAGAC	2 cut(s)	65, 236
Bbv12I	GWGCWC	2 cut(s)	148, 285
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	398
BceAI	ACGGC	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	2 cut(s)	179, 234
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	6 cut(s)	36, 162, 183, 213, 384, 387
BlpI	GCTNAGC	1 cut(s)	284
BlsI	GCNGC	6 cut(s)	37, 163, 184, 214, 385, 388
Bme18I	GGWCC	1 cut(s)	57
BmgBI	CACGTC	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	139, 373
BpiI	GAAGAC	2 cut(s)	65, 236
Bpu10I	CCTNAGC	1 cut(s)	186
Bpu1102I	GCTNAGC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	378
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 361
Bse118I	RCCGGY	2 cut(s)	68, 365
BseDI	CCNNGG	1 cut(s)	378
BseLI	CCNNNNNNNGG	2 cut(s)	54, 361
BseMII	CTCAG	2 cut(s)	177, 298
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	398
Bsh1236I	CGCG	2 cut(s)	55, 212
BshFI	GGCC	5 cut(s)	38, 47, 68, 365, 383
BshNI	GGYRCC	1 cut(s)	137
BsiHKAI	GWGCWC	2 cut(s)	148, 285
BsiSI	CCGG	4 cut(s)	69, 141, 149, 366
BslI	CCNNNNNNNGG	2 cut(s)	54, 361
BsmAI	GTCTC	1 cut(s)	213
BsnI	GGCC	5 cut(s)	38, 47, 68, 365, 383
Bsp1286I	GDGCHC	2 cut(s)	148, 285
Bsp143I	GATC	1 cut(s)	26
Bsp1720I	GCTNAGC	1 cut(s)	284
BspACI	CCGC	8 cut(s)	5, 35, 55, 162, 183, 212, 369, 384
BspANI	GGCC	5 cut(s)	38, 47, 68, 365, 383
BspCNI	CTCAG	2 cut(s)	178, 297
BspFNI	CGCG	2 cut(s)	55, 212
BspLI	GGNNCC	2 cut(s)	139, 373
BspPI	GGATC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	137
BsrFI	RCCGGY	2 cut(s)	68, 365
BssAI	RCCGGY	2 cut(s)	68, 365
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	378
BstC8I	GCNNGC	3 cut(s)	261, 290, 367
BstDEI	CTNAG	2 cut(s)	186, 284
BstFNI	CGCG	2 cut(s)	55, 212
BstKTI	GATC	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 209, 265, 289
BstUI	CGCG	2 cut(s)	55, 212
BstV1I	GCAGC	1 cut(s)	398
BstV2I	GAAGAC	2 cut(s)	65, 236
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	5 cut(s)	38, 47, 68, 365, 383
BtrI	CACGTC	1 cut(s)	51
Cac8I	GCNNGC	3 cut(s)	261, 290, 367
Cfr10I	RCCGGY	2 cut(s)	68, 365
Cfr13I	GGNCC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	328
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	186, 284
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
EaeI	YGGCCR	1 cut(s)	36
Ecl136II	GAGCTC	2 cut(s)	146, 283
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	2 cut(s)	148, 285
Eco47I	GGWCC	1 cut(s)	57
Eco53kI	GAGCTC	2 cut(s)	146, 283
EcoICRI	GAGCTC	2 cut(s)	146, 283
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	2 cut(s)	148, 285
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	1 cut(s)	331
FaiI	YATR	1 cut(s)	329
FatI	CATG	1 cut(s)	327
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	6 cut(s)	36, 162, 183, 213, 384, 387
FriOI	GRGCYC	2 cut(s)	148, 285
Fsp4HI	GCNGC	6 cut(s)	36, 162, 183, 213, 384, 387
FspBI	CTAG	2 cut(s)	179, 234
GluI	GCNGC	6 cut(s)	36, 162, 183, 213, 384, 387
HaeIII	GGCC	5 cut(s)	38, 47, 68, 365, 383
HapII	CCGG	4 cut(s)	69, 141, 149, 366
Hin1II	CATG	1 cut(s)	331
HindIII	AAGCTT	2 cut(s)	18, 290
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	4 cut(s)	69, 141, 149, 366
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188III	TCNNGA	2 cut(s)	106, 194
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	2 cut(s)	55, 89
HpyAV	CCTTC	4 cut(s)	37, 103, 355, 356
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 209, 265, 289
HpyF3I	CTNAG	2 cut(s)	186, 284
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	331
KroI	GCCGGC	1 cut(s)	365
KroNI	GCCGGC	1 cut(s)	367
Kzo9I	GATC	1 cut(s)	26
LmnI	GCTCC	4 cut(s)	143, 151, 280, 357
Lsp1109I	GCAGC	1 cut(s)	398
MaeI	CTAG	2 cut(s)	179, 234
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	2 cut(s)	206, 304
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	2 cut(s)	65, 241
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	2 cut(s)	148, 285
MluCI	AATT	4 cut(s)	77, 197, 237, 309
MlyI	GAGTC	1 cut(s)	141
MnlI	CCTC	5 cut(s)	5, 167, 181, 271, 385
MroNI	GCCGGC	1 cut(s)	365
MspA1I	CMGCKG	2 cut(s)	185, 389
MspI	CCGG	4 cut(s)	69, 141, 149, 366
MunI	CAATTG	1 cut(s)	309
MvnI	CGCG	2 cut(s)	55, 212
MwoI	GCNNNNNNNGC	4 cut(s)	44, 209, 265, 289
NaeI	GCCGGC	1 cut(s)	367
NdeII	GATC	1 cut(s)	26
NgoMIV	GCCGGC	1 cut(s)	365
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	2 cut(s)	139, 373
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	304
PdiI	GCCGGC	1 cut(s)	367
PkrI	GCNGC	6 cut(s)	37, 163, 184, 214, 385, 388
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Psp124BI	GAGCTC	2 cut(s)	148, 285
PspN4I	GGNNCC	2 cut(s)	139, 373
PspPI	GGNCC	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacI	GAGCTC	2 cut(s)	148, 285
SatI	GCNGC	6 cut(s)	36, 162, 183, 213, 384, 387
Sau3AI	GATC	1 cut(s)	26
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	1 cut(s)	141
SduI	GDGCHC	2 cut(s)	148, 285
SfiI	GGCCNNNNNGGCC	1 cut(s)	44
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	4 cut(s)	77, 197, 237, 309
SsiI	CCGC	8 cut(s)	5, 35, 55, 162, 183, 212, 369, 384
SspMI	CTAG	2 cut(s)	179, 234
SstI	GAGCTC	2 cut(s)	148, 285
StyI	CCWWGG	1 cut(s)	378
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	1 cut(s)	10
TasI	AATT	4 cut(s)	77, 197, 237, 309
TauI	GCSGC	5 cut(s)	38, 164, 185, 215, 386
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	57
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	2 cut(s)	179, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.