Rmu_co8073734.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8073734.1
OG0001504
Physical Location & Seq
Reverse (-)
2 .. 265
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8073734.1_g000001.1.cds

Sequence Viewer

Length: 264 bp
atggagaaagaagactttgggtttgtcgaatggcatagaggttggccggccctgagcctaggcgaaggtcttatgtgccctgttggcaatccacatgaccttgctcttaaccaatcagcgcacagcatcgggtcctctatattaaaaccccccactgctttactcattccatcacagagcaactccctacccactctctctcacattaggtctatgtccaggtcaagcaaagctgggcttcaatttccggtggataggatcgcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.52

Weight (kDa)

6.9

Isoelectric Point (pI)

64.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 44
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 1 cut(s) 218
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
AoxI GGCC 2 cut(s) 44, 48
ArsI GACNNNNNNTTYG 1 cut(s) 37
AspA2I CCTAGG 1 cut(s) 58
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 49, 132
AvaII GGWCC 1 cut(s) 132
AvrII CCTAGG 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 18
BccI CCATC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 220
BfaI CTAG 1 cut(s) 59
BglI GCCNNNNNGGC 1 cut(s) 84
BlnI CCTAGG 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 220
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 2 cut(s) 49, 132
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 220
BmsI GCATC 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 18
Bpu10I CCTNAGC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 247
Bse118I RCCGGY 1 cut(s) 46
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 44
BseSI GKGCMC 1 cut(s) 80
BseYI CCCAGC 1 cut(s) 233
BshFI GGCC 2 cut(s) 46, 50
BsiSI CCGG 2 cut(s) 47, 248
BsnI GGCC 2 cut(s) 46, 50
Bsp1286I GDGCHC 1 cut(s) 80
Bsp143I GATC 1 cut(s) 258
BspANI GGCC 2 cut(s) 46, 50
BspCNI CTCAG 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 133
BsrFI RCCGGY 1 cut(s) 46
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 1 cut(s) 53
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 1 cut(s) 261
BstMBI GATC 1 cut(s) 258
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstNI CCWGG 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 218
BstSLI GKGCMC 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 18
BsuRI GGCC 2 cut(s) 46, 50
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 48
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 2 cut(s) 49, 132
CviAII CATG 1 cut(s) 95
CviJI RGCY 5 cut(s) 46, 50, 57, 233, 238
CviKI_1 RGCY 5 cut(s) 46, 50, 57, 233, 238
DdeI CTNAG 1 cut(s) 53
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 1 cut(s) 98
FaiI YATR 5 cut(s) 36, 74, 96, 140, 215
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FatI CATG 1 cut(s) 94
FseI GGCCGGCC 1 cut(s) 50
FspBI CTAG 1 cut(s) 59
GlaI GCGC 1 cut(s) 120
GsaI CCCAGC 1 cut(s) 237
HaeIII GGCC 2 cut(s) 46, 50
HapII CCGG 2 cut(s) 47, 248
HhaI GCGC 1 cut(s) 121
Hin1II CATG 1 cut(s) 98
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HpaII CCGG 2 cut(s) 47, 248
HpyAV CCTTC 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 1 cut(s) 98
HspAI GCGC 1 cut(s) 119
KroI GCCGGC 1 cut(s) 46
KroNI GCCGGC 1 cut(s) 48
Kzo9I GATC 1 cut(s) 258
LpnPI CCDG 6 cut(s) 60, 65, 93, 205, 219, 232
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 59
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 1 cut(s) 23
MhlI GDGCHC 1 cut(s) 80
MluCI AATT 1 cut(s) 242
MnlI CCTC 2 cut(s) 32, 145
MroNI GCCGGC 1 cut(s) 46
MseI TTAA 2 cut(s) 108, 143
MspI CCGG 2 cut(s) 47, 248
MspR9I CCNGG 1 cut(s) 220
MvaI CCWGG 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 84
NaeI GCCGGC 1 cut(s) 48
NdeII GATC 1 cut(s) 258
NgoMIV GCCGGC 1 cut(s) 46
NlaIII CATG 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 133
PdiI GCCGGC 1 cut(s) 48
PpuMI RGGWCCY 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 218
PspFI CCCAGC 1 cut(s) 233
PspGI CCWGG 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 2 cut(s) 49, 132
PspPPI RGGWCCY 1 cut(s) 132
RigI GGCCGGCC 1 cut(s) 50
SaqAI TTAA 2 cut(s) 108, 143
Sau3AI GATC 1 cut(s) 258
Sau96I GGNCC 2 cut(s) 49, 132
ScrFI CCNGG 1 cut(s) 220
SduI GDGCHC 1 cut(s) 80
SetI ASST 6 cut(s) 43, 70, 102, 212, 224, 235
SfaNI GCATC 1 cut(s) 135
SinI GGWCC 1 cut(s) 132
Sse9I AATT 1 cut(s) 242
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 218
StyI CCWWGG 1 cut(s) 58
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 242
Tru1I TTAA 2 cut(s) 108, 143
Tru9I TTAA 2 cut(s) 108, 143
TscAI CASTG 1 cut(s) 160
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 132
XmaJI CCTAGG 1 cut(s) 58
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.