Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001504

Physical Location & Seq

Genomic Coordinates Reverse (-)

13637236 .. 13638449

Gene Structure 1214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCGGGTCGGGGAAAACAACTTGGATCTGGTGCAGCGAAGAAGTCTACTTCTCGTAGTAGCAAGGCTGGGCTTCAATTCCCTGTTGGTCGTATCGCTCGATTTTTGAAAGCCGGTAAGTACGCCGAGCGTGTTGGTGCCGGAGCTCCGGTCTATCTCGCCGCCGTTCTTGAATACCTCGCCGCTGAGGTACTTGAGCTTGCTGGGAACGCAGCGAGAGACAACAAGAAGACCCGTATAGTTCCACGACACATTCAGCTTGCTGTGAGGAATGATGAGGAGCTAAGCAAGTTGCTTGGAGATGTGACAATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTTCTCCCCAAGAAGGCTGGTTCATCTAAGCCTACTGAAGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006950 GO:0006996 GO:0008150 GO:0009292 GO:0009294 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

131

Amino Acids

13.83

Weight (kDa)

10.05

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	13 - 90	1.7e-14	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	93 - 126	2.3e-18	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51060 AT3G20670 AT4G27230 AT4G27230 AT5G54640
fragaria_vesca	FvH4_3g02940 FvH4_3g21650
malus_domestica	MD03G1213800.v1.1 MD03G1238000.v1.1 MD05G1335800.v1.1 MD10G1311400.v1.1
prunus_persica	Prupe.4G029500_v2.0.a1 Prupe.4G200700_v2.0.a1
pyrus_communis	pycom03g16220 pycom05g30720 pycom10g26260 pycom11g20100
rosa_chinensis	RchiOBHm_Chr1g0369691 RchiOBHm_Chr5g0004551 RchiOBHm_Chr5g0031581 RchiOBHm_Chr5g0037131 RchiOBHm_Chr5g0054271 RchiOBHm_Chr6g0246221 RchiOBHm_Chr6g0272401
rosa_laevigata	RLG00000031239 RLG00000033752
rosa_multiflora	Rmu_co8073734.1_g000001 Rmu_sc0002354.1_g000017 Rmu_sc0003758.1_g000011 Rmu_sc0004802.1_g000002 Rmu_sc0018628.1_g000004 Rmu_sc0042798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043850 Rroxscaffold_1G00070980
rosa_rugosa	Rorug04G0412200 Rorug05G0160900 Rorug05G0310600 Rorug05G0519700
rosa_samantha	Rh4BG384100 Rh4CG398800 Rh5BG039700 Rh5BG254500 Rh5CG043400 Rh5CG287000 Rh5DG039200 Rh5DG262900 Rh6AG354100 Rh6CG397000
rosa_wichuraiana	Rw4G018680 Rw5G003870 Rw5G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	47
AciI	CCGC	3 cut(s)	5, 162, 183
AclWI	GGATC	1 cut(s)	34
AfaI	GTAC	2 cut(s)	122, 192
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	3 cut(s)	77, 109, 173
AluBI	AGCT	4 cut(s)	146, 199, 259, 283
AluI	AGCT	4 cut(s)	146, 199, 259, 283
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	35, 212
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	148
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	47, 224
BceAI	ACGGC	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	213
BisI	GCNGC	4 cut(s)	36, 162, 183, 213
BlpI	GCTNAGC	1 cut(s)	284
BlsI	GCNGC	4 cut(s)	37, 163, 184, 214
BmiI	GGNNCC	1 cut(s)	139
BmsI	GCATC	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	186
Bpu1102I	GCTNAGC	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	215
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse118I	RCCGGY	1 cut(s)	113
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMII	CTCAG	1 cut(s)	177
BseRI	GAGGAG	2 cut(s)	293, 336
BseXI	GCAGC	2 cut(s)	47, 224
BseYI	CCCAGC	2 cut(s)	68, 203
BsgI	GTGCAG	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	3 cut(s)	114, 141, 149
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	26
Bsp1720I	GCTNAGC	1 cut(s)	284
BspACI	CCGC	3 cut(s)	5, 162, 183
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	113
BssMI	GATC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	201, 261
BstDEI	CTNAG	3 cut(s)	186, 284, 375
BstF5I	GGATG	1 cut(s)	336
BstKTI	GATC	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstV1I	GCAGC	2 cut(s)	47, 224
BstV2I	GAAGAC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	336
Cac8I	GCNNGC	2 cut(s)	201, 261
Cfr10I	RCCGGY	1 cut(s)	113
Csp6I	GTAC	2 cut(s)	121, 191
CviJI	RGCY	9 cut(s)	68, 73, 113, 146, 199, 259, 283, 365, 379
CviKI_1	RGCY	9 cut(s)	68, 73, 113, 146, 199, 259, 283, 365, 379
CviQI	GTAC	2 cut(s)	121, 191
DdeI	CTNAG	3 cut(s)	186, 284, 375
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	148
FaiI	YATR	1 cut(s)	239
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	4 cut(s)	36, 162, 183, 213
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	4 cut(s)	36, 162, 183, 213
GluI	GCNGC	4 cut(s)	36, 162, 183, 213
GsaI	CCCAGC	2 cut(s)	72, 207
HapII	CCGG	3 cut(s)	114, 141, 149
HpaII	CCGG	3 cut(s)	114, 141, 149
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	2 cut(s)	355, 359
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	3 cut(s)	186, 284, 375
Kzo9I	GATC	1 cut(s)	26
LmnI	GCTCC	3 cut(s)	143, 151, 280
LpnPI	CCDG	8 cut(s)	15, 54, 96, 127, 154, 162, 189, 351
Lsp1109I	GCAGC	2 cut(s)	47, 224
LweI	GCATC	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	2 cut(s)	52, 241
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	2 cut(s)	77, 309
MnlI	CCTC	5 cut(s)	181, 188, 261, 271, 314
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	3 cut(s)	114, 141, 149
MunI	CAATTG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeII	GATC	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PkrI	GCNGC	4 cut(s)	37, 163, 184, 214
Psp124BI	GAGCTC	1 cut(s)	148
PspFI	CCCAGC	2 cut(s)	68, 203
PspN4I	GGNNCC	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	26
RsaI	GTAC	2 cut(s)	122, 192
RsaNI	GTAC	2 cut(s)	121, 191
SacI	GAGCTC	1 cut(s)	148
SatI	GCNGC	4 cut(s)	36, 162, 183, 213
Sau3AI	GATC	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	6 cut(s)	148, 180, 192, 201, 261, 285
SfaNI	GCATC	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	77, 309
SsiI	CCGC	3 cut(s)	5, 162, 183
SstI	GAGCTC	1 cut(s)	148
TaqI	TCGA	1 cut(s)	100
TasI	AATT	2 cut(s)	77, 309
TauI	GCSGC	2 cut(s)	164, 185
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	2 cut(s)	35, 212
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	1 cut(s)	360
XmiI	GTMKAC	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.