RchiOBHm_Chr5g0031581

histone H2A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001504
Physical Location & Seq
Reverse (-)
25255885 .. 25256479
595 bp
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UTR
Exon/CDS
Intron
PRQ31083

Sequence Viewer

Length: 255 bp
ATGTCCAGGTCAATCAAAGCTGGGCTTCAATTTTCGGTGGATAGGATCGCCCAGTTTCTTAAGTCCGGCCAATACGCCGTGCGTGTCGGCGCCGGAGCTCCGGTACTGGAAATTATTGGGTTTAAGGTTTTGGAGCTTCCTGGCAACGCAGCTAGGGACAACAAGAAGAACCGTATTGTACCGAGGTGTACAATCTCAAATCAACTATGGTTTTTTGTAGAACCACCCCGTCGTACTATATACTCACGGATGTAA

Protein Analysis

84

Amino Acids

9.48

Weight (kDa)

10.94

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 89
AclWI GGATC 1 cut(s) 53
AcoI YGGCCR 1 cut(s) 67
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 4 cut(s) 105, 180, 190, 235
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 1 cut(s) 29
AjnI CCWGG 2 cut(s) 5, 139
AluBI AGCT 4 cut(s) 20, 98, 136, 152
AluI AGCT 4 cut(s) 20, 98, 136, 152
Alw21I GWGCWC 1 cut(s) 100
AlwI GGATC 1 cut(s) 53
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 149
AspLEI GCGC 1 cut(s) 92
BanI GGYRCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 100
BbvI GCAGC 1 cut(s) 161
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 2 cut(s) 7, 141
BfaI CTAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 93
BfrI CTTAAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 2 cut(s) 7, 141
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 2 cut(s) 7, 141
BmrI ACTGGG 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 182
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bse1I ACTGG 2 cut(s) 52, 111
BseBI CCWGG 2 cut(s) 7, 141
BseDI CCNNGG 1 cut(s) 182
BseGI GGATG 1 cut(s) 255
BseNI ACTGG 2 cut(s) 52, 111
BseXI GCAGC 1 cut(s) 161
BseYI CCCAGC 1 cut(s) 20
BshFI GGCC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 100
BsiSI CCGG 3 cut(s) 66, 93, 101
BslFI GGGAC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 100
Bsp1407I TGTACA 1 cut(s) 188
Bsp143I GATC 1 cut(s) 45
BspANI GGCC 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 91
BspPI GGATC 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 89
BspTI CTTAAG 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 188
BsrI ACTGG 2 cut(s) 52, 111
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 1 cut(s) 45
BssNI GRCGYC 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 7, 141
Bst4CI ACNGT 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 90
BstAFI CTTAAG 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 188
BstF5I GGATG 1 cut(s) 255
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstNI CCWGG 2 cut(s) 7, 141
BstSCI CCNGG 2 cut(s) 5, 139
BstV1I GCAGC 1 cut(s) 161
BsuRI GGCC 1 cut(s) 69
BtsCI GGATG 1 cut(s) 255
CfoI GCGC 1 cut(s) 92
Csp6I GTAC 4 cut(s) 104, 179, 189, 234
CviJI RGCY 6 cut(s) 20, 25, 69, 98, 136, 152
CviKI_1 RGCY 6 cut(s) 20, 25, 69, 98, 136, 152
CviQI GTAC 4 cut(s) 104, 179, 189, 234
DinI GGCGCC 1 cut(s) 91
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
EaeI YGGCCR 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 5, 139
EcoT38I GRGCYC 1 cut(s) 100
EgeI GGCGCC 1 cut(s) 91
EheI GGCGCC 1 cut(s) 91
FaiI YATR 3 cut(s) 208, 239, 241
FalI AAGNNNNNCTT 2 cut(s) 9, 41
FaqI GGGAC 1 cut(s) 170
Fnu4HI GCNGC 1 cut(s) 150
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 1 cut(s) 153
GlaI GCGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 150
GsaI CCCAGC 1 cut(s) 24
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 1 cut(s) 69
HapII CCGG 3 cut(s) 66, 93, 101
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 90
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HpaII CCGG 3 cut(s) 66, 93, 101
Hpy166II GTNNAC 1 cut(s) 189
Hpy8I GTNNAC 1 cut(s) 189
Hpy99I CGWCG 1 cut(s) 234
HpyCH4III ACNGT 1 cut(s) 173
Hsp92I GRCGYC 1 cut(s) 90
HspAI GCGC 1 cut(s) 90
KasI GGCGCC 1 cut(s) 89
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 3 cut(s) 95, 103, 133
LpnPI CCDG 9 cut(s) 6, 19, 65, 79, 92, 106, 114, 126, 153
Lsp1109I GCAGC 1 cut(s) 161
MaeI CTAG 1 cut(s) 153
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 100
MluCI AATT 2 cut(s) 29, 111
Mly113I GGCGCC 1 cut(s) 90
MnlI CCTC 1 cut(s) 177
MseI TTAA 2 cut(s) 60, 123
MspCI CTTAAG 1 cut(s) 59
MspI CCGG 3 cut(s) 66, 93, 101
MspR9I CCNGG 2 cut(s) 7, 141
MvaI CCWGG 2 cut(s) 7, 141
NarI GGCGCC 1 cut(s) 90
NdeII GATC 1 cut(s) 45
NlaIV GGNNCC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 151
PluTI GGCGCC 1 cut(s) 93
Psp124BI GAGCTC 1 cut(s) 100
Psp6I CCWGG 2 cut(s) 5, 139
PspFI CCCAGC 1 cut(s) 20
PspGI CCWGG 2 cut(s) 5, 139
PspN4I GGNNCC 1 cut(s) 91
RsaI GTAC 4 cut(s) 105, 180, 190, 235
RsaNI GTAC 4 cut(s) 104, 179, 189, 234
SacI GAGCTC 1 cut(s) 100
SaqAI TTAA 2 cut(s) 60, 123
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 45
ScrFI CCNGG 2 cut(s) 7, 141
SduI GDGCHC 1 cut(s) 100
SetI ASST 7 cut(s) 11, 22, 100, 129, 138, 154, 188
SfoI GGCGCC 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 29, 111
SspDI GGCGCC 1 cut(s) 89
SspMI CTAG 1 cut(s) 153
SstI GAGCTC 1 cut(s) 100
StyD4I CCNGG 2 cut(s) 5, 139
TaaI ACNGT 1 cut(s) 173
TasI AATT 2 cut(s) 29, 111
TatI WGTACW 1 cut(s) 188
Tru1I TTAA 2 cut(s) 60, 123
Tru9I TTAA 2 cut(s) 60, 123
TseI GCWGC 1 cut(s) 149
Vha464I CTTAAG 1 cut(s) 59
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.