Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001504

Physical Location & Seq

Genomic Coordinates Forward (+)

1569121 .. 1570130

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCCGGAAGAGGCAAGTCTCTCGGCTCCGGCGCCGCCAAGAAGGCCACCTCCCGCAGCAGCAAAGCCGGCCTCCAGTTCCCTGTCGGCCGTATCGCTCGCTTCCTCAAATCCGGCAAGTACGCCGAGCGCGTCGGCGCTGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTATCTCGCCGCCGAGGTTCTGGAATTGGCCGGAAACGCAGCAAGGGACAACAAGAAGACTCGGATTGTGCCACGTCATATCCAATTGGCTGTCAGGAATGACGAAGAGCTCGGCAGGCTTCTCGGATCTGTCACTATTGCAAACGGCGGCGTTTTACCTAATATCCACAACATGCTTTTGCCAAAGAAGACCTCCAAGAGCGCTCCGGTCGACGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

132

Amino Acids

13.79

Weight (kDa)

10.23

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	13 - 90	1.6e-14	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	93 - 126	9.4e-19	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51060 AT3G20670 AT4G27230 AT4G27230 AT5G54640
fragaria_vesca	FvH4_3g02940 FvH4_3g21650
malus_domestica	MD03G1213800.v1.1 MD03G1238000.v1.1 MD05G1335800.v1.1 MD10G1311400.v1.1
prunus_persica	Prupe.4G029500_v2.0.a1 Prupe.4G200700_v2.0.a1
pyrus_communis	pycom03g16220 pycom05g30720 pycom10g26260 pycom11g20100
rosa_chinensis	RchiOBHm_Chr1g0369691 RchiOBHm_Chr5g0004551 RchiOBHm_Chr5g0031581 RchiOBHm_Chr5g0037131 RchiOBHm_Chr5g0054271 RchiOBHm_Chr6g0246221 RchiOBHm_Chr6g0272401
rosa_laevigata	RLG00000031239 RLG00000033752
rosa_multiflora	Rmu_co8073734.1_g000001 Rmu_sc0002354.1_g000017 Rmu_sc0003758.1_g000011 Rmu_sc0004802.1_g000002 Rmu_sc0018628.1_g000004 Rmu_sc0042798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043850 Rroxscaffold_1G00070980
rosa_rugosa	Rorug04G0412200 Rorug05G0160900 Rorug05G0310600 Rorug05G0519700
rosa_samantha	Rh4BG384100 Rh4CG398800 Rh5BG039700 Rh5BG254500 Rh5CG043400 Rh5CG287000 Rh5DG039200 Rh5DG262900 Rh6AG354100 Rh6CG397000
rosa_wichuraiana	Rw4G018680 Rw5G003870 Rw5G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	32, 143
AccI	GTMKAC	2 cut(s)	153, 384
AccII	CGCG	1 cut(s)	132
AciI	CCGC	5 cut(s)	36, 55, 162, 183, 321
AclWI	GGATC	1 cut(s)	307
AcoI	YGGCCR	3 cut(s)	3, 88, 201
AcyI	GRCGYC	2 cut(s)	33, 144
AfaI	GTAC	1 cut(s)	122
AfeI	AGCGCT	1 cut(s)	376
AjiI	CACGTC	1 cut(s)	248
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	307
Ama87I	CYCGRG	1 cut(s)	170
Aor51HI	AGCGCT	1 cut(s)	376
AoxI	GGCC	5 cut(s)	3, 45, 70, 88, 201
ApeKI	GCWGC	3 cut(s)	57, 60, 212
AspLEI	GCGC	5 cut(s)	35, 132, 140, 146, 377
AvaI	CYCGRG	1 cut(s)	170
BanI	GGYRCC	2 cut(s)	32, 143
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	2 cut(s)	236, 368
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	3 cut(s)	69, 72, 224
BceAI	ACGGC	3 cut(s)	75, 149, 334
BcgI	CGANNNNNNTGC	4 cut(s)	4, 38, 277, 311
BcoDI	GTCTC	1 cut(s)	24
BfoI	RGCGCY	4 cut(s)	36, 141, 147, 378
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	7 cut(s)	36, 58, 61, 162, 183, 213, 322
BlsI	GCNGC	7 cut(s)	37, 59, 62, 163, 184, 214, 323
BmeT110I	CYCGRG	1 cut(s)	170
BmgBI	CACGTC	1 cut(s)	248
BmiI	GGNNCC	3 cut(s)	28, 34, 145
BpiI	GAAGAC	2 cut(s)	236, 368
BpmI	CTGGAG	1 cut(s)	59
BsaHI	GRCGYC	2 cut(s)	33, 144
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	379
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	76
BseX3I	CGGCCG	1 cut(s)	88
BseXI	GCAGC	3 cut(s)	69, 72, 224
Bsh1236I	CGCG	1 cut(s)	132
Bsh1285I	CGRYCG	2 cut(s)	91, 384
BshFI	GGCC	5 cut(s)	5, 47, 72, 90, 203
BshNI	GGYRCC	2 cut(s)	32, 143
BsiEI	CGRYCG	2 cut(s)	91, 384
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	6 cut(s)	6, 30, 69, 114, 204, 380
BslFI	GGGAC	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	5 cut(s)	5, 47, 72, 90, 203
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	1 cut(s)	299
BspACI	CCGC	5 cut(s)	36, 55, 162, 183, 321
BspANI	GGCC	5 cut(s)	5, 47, 72, 90, 203
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	3 cut(s)	28, 34, 145
BspPI	GGATC	1 cut(s)	307
BspQI	GCTCTTC	1 cut(s)	273
BspT107I	GGYRCC	2 cut(s)	32, 143
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	299
BssNI	GRCGYC	2 cut(s)	33, 144
Bst6I	CTCTTC	2 cut(s)	4, 273
BstACI	GRCGYC	2 cut(s)	33, 144
BstC8I	GCNNGC	4 cut(s)	70, 100, 142, 290
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	4 cut(s)	36, 141, 147, 378
BstHHI	GCGC	5 cut(s)	35, 132, 140, 146, 377
BstKTI	GATC	1 cut(s)	302
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	299
BstMCI	CGRYCG	2 cut(s)	91, 384
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 69, 209, 289
BstNSI	RCATGY	1 cut(s)	349
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	3 cut(s)	69, 72, 224
BstV2I	GAAGAC	2 cut(s)	236, 368
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
BstZI	CGGCCG	1 cut(s)	88
BsuRI	GGCC	5 cut(s)	5, 47, 72, 90, 203
BtrI	CACGTC	1 cut(s)	248
Cac8I	GCNNGC	4 cut(s)	70, 100, 142, 290
CfoI	GCGC	5 cut(s)	35, 132, 140, 146, 377
Cfr10I	RCCGGY	1 cut(s)	68
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	346
CviQI	GTAC	1 cut(s)	121
DinI	GGCGCC	2 cut(s)	34, 145
DpnI	GATC	1 cut(s)	301
DpnII	GATC	1 cut(s)	299
EaeI	YGGCCR	3 cut(s)	3, 88, 201
EagI	CGGCCG	1 cut(s)	88
Eam1104I	CTCTTC	2 cut(s)	4, 273
EarI	CTCTTC	2 cut(s)	4, 273
Ecl136II	GAGCTC	1 cut(s)	283
EclXI	CGGCCG	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	285
Eco47III	AGCGCT	1 cut(s)	376
Eco52I	CGGCCG	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	283
Eco88I	CYCGRG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	285
EgeI	GGCGCC	2 cut(s)	34, 145
EheI	GGCGCC	2 cut(s)	34, 145
FaeI	CATG	1 cut(s)	349
FaiI	YATR	2 cut(s)	252, 347
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	1 cut(s)	345
FauI	CCCGC	1 cut(s)	62
FblI	GTMKAC	2 cut(s)	153, 384
Fnu4HI	GCNGC	7 cut(s)	36, 58, 61, 162, 183, 213, 322
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	7 cut(s)	36, 58, 61, 162, 183, 213, 322
GlaI	GCGC	5 cut(s)	34, 131, 139, 145, 376
GluI	GCNGC	7 cut(s)	36, 58, 61, 162, 183, 213, 322
GsuI	CTGGAG	1 cut(s)	59
HaeII	RGCGCY	4 cut(s)	36, 141, 147, 378
HaeIII	GGCC	5 cut(s)	5, 47, 72, 90, 203
HapII	CCGG	6 cut(s)	6, 30, 69, 114, 204, 380
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	5 cut(s)	35, 132, 140, 146, 377
Hin1I	GRCGYC	2 cut(s)	33, 144
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	5 cut(s)	33, 130, 138, 144, 375
HinP1I	GCGC	5 cut(s)	33, 130, 138, 144, 375
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	6 cut(s)	6, 30, 69, 114, 204, 380
Hpy166II	GTNNAC	2 cut(s)	154, 385
Hpy188I	TCNGA	2 cut(s)	237, 299
Hpy188III	TCNNGA	2 cut(s)	194, 268
Hpy8I	GTNNAC	2 cut(s)	154, 385
Hpy99I	CGWCG	2 cut(s)	137, 389
HpyAV	CCTTC	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 69, 209, 289
HpySE526I	ACGT	1 cut(s)	247
Hsp92I	GRCGYC	2 cut(s)	33, 144
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	5 cut(s)	33, 130, 138, 144, 375
KasI	GGCGCC	2 cut(s)	32, 143
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	299
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	2 cut(s)	32, 382
Lsp1109I	GCAGC	3 cut(s)	69, 72, 224
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	1 cut(s)	301
MboI	GATC	1 cut(s)	299
MboII	GAAGA	4 cut(s)	21, 241, 290, 373
MfeI	CAATTG	1 cut(s)	257
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	2 cut(s)	197, 257
Mly113I	GGCGCC	2 cut(s)	33, 144
MlyI	GAGTC	1 cut(s)	226
MnlI	CCTC	9 cut(s)	5, 61, 83, 116, 167, 179, 181, 376, 382
MroNI	GCCGGC	1 cut(s)	68
MspI	CCGG	6 cut(s)	6, 30, 69, 114, 204, 380
MunI	CAATTG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	4 cut(s)	44, 69, 209, 289
NaeI	GCCGGC	1 cut(s)	70
NarI	GGCGCC	2 cut(s)	33, 144
NdeII	GATC	1 cut(s)	299
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	3 cut(s)	28, 34, 145
NmeAIII	GCCGAG	3 cut(s)	151, 211, 264
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	1 cut(s)	349
PaeR7I	CTCGAG	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PdiI	GCCGGC	1 cut(s)	70
PkrI	GCNGC	7 cut(s)	37, 59, 62, 163, 184, 214, 323
PleI	GAGTC	1 cut(s)	226
PluTI	GGCGCC	2 cut(s)	36, 147
PpsI	GAGTC	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	285
PspN4I	GGNNCC	3 cut(s)	28, 34, 145
PspXI	VCTCGAGB	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	299
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	285
SalI	GTCGAC	1 cut(s)	383
SapI	GCTCTTC	1 cut(s)	273
SatI	GCNGC	7 cut(s)	36, 58, 61, 162, 183, 213, 322
Sau3AI	GATC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	7 cut(s)	53, 159, 192, 250, 285, 334, 368
SfoI	GGCGCC	2 cut(s)	34, 145
Sfr274I	CTCGAG	1 cut(s)	170
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	2 cut(s)	197, 257
SsiI	CCGC	5 cut(s)	36, 55, 162, 183, 321
SspDI	GGCGCC	2 cut(s)	32, 143
SstI	GAGCTC	1 cut(s)	285
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	2 cut(s)	171, 384
TasI	AATT	2 cut(s)	197, 257
TauI	GCSGC	4 cut(s)	38, 164, 185, 324
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	3 cut(s)	57, 60, 212
Tsp45I	GTSAC	1 cut(s)	304
XceI	RCATGY	1 cut(s)	349
XhoI	CTCGAG	1 cut(s)	170
XmiI	GTMKAC	2 cut(s)	153, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.