Prupe.4G029500_v2.0.a1

Histone H2A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001504
Physical Location & Seq
Forward (+)
1377927 .. 1378641
715 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G029500.1

Sequence Viewer

Length: 399 bp
ATGGCCGGAAGAGGAAAATCAATTGGCTCTGGTGCCGCCAAGAAGGCTACATCTCGTAGCAGCAAGGCCGGTCTGCAATTCCCGGTCGGCCGTATCGCCCGGTTCTTGAAAGCCGGCAAGTACGCCGAGCGAGTCGGTGCTGGCGCACCGGTCTACCTCGCCGCCGTCCTCGAATATCTCGCTGCTGAGGTGTTGGAATTGGCTGGGAACGCTGCTCGGGATAACAAGAAGACGAGGATTGTGCCGAGGCACATCCAGTTGGCCGTCAGGAACGACGAGGAGCTGAGCAAGCTGCTCGGCTCCGTCACCATCGCTAACGGGGGCGTTATGCCCAACATCCACAACATGCTCTTGCCTAAGAAAACTGGCACCGGAAAATCTGGCCCCTCTGACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04217 ko05034 ko05322 map04217 map05034 map05322
Pfam Domains
Protein Families
Histone Histone_H2A_C

Protein Analysis

133

Amino Acids

13.77

Weight (kDa)

10.28

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 32, 368
AccI GTMKAC 1 cut(s) 153
AciI CCGC 2 cut(s) 36, 162
AcoI YGGCCR 3 cut(s) 3, 88, 261
AfaI GTAC 1 cut(s) 122
AgeI ACCGGT 1 cut(s) 148
AgsI TTSAA 1 cut(s) 109
AluBI AGCT 2 cut(s) 283, 292
AluI AGCT 2 cut(s) 283, 292
Ama87I CYCGRG 1 cut(s) 216
AoxI GGCC 5 cut(s) 3, 66, 88, 261, 382
ApeKI GCWGC 4 cut(s) 60, 182, 212, 292
AsiGI ACCGGT 1 cut(s) 148
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 383
AsuC2I CCSGG 2 cut(s) 83, 100
AsuHPI GGTGA 1 cut(s) 298
AvaI CYCGRG 1 cut(s) 216
BanI GGYRCC 2 cut(s) 32, 368
BbsI GAAGAC 1 cut(s) 236
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 4 cut(s) 72, 169, 199, 279
BccI CCATC 1 cut(s) 317
BceAI ACGGC 3 cut(s) 75, 149, 248
BcgI CGANNNNNNTGC 4 cut(s) 223, 257, 277, 311
BcnI CCSGG 2 cut(s) 83, 100
BfaI CTAG 1 cut(s) 397
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 6 cut(s) 36, 61, 162, 183, 213, 293
BlpI GCTNAGC 1 cut(s) 284
BlsI GCNGC 6 cut(s) 37, 62, 163, 184, 214, 294
Bme1390I CCNGG 2 cut(s) 83, 100
BmeT110I CYCGRG 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 383
BmiI GGNNCC 4 cut(s) 34, 301, 370, 385
BmrFI CCNGG 2 cut(s) 83, 100
BpiI GAAGAC 1 cut(s) 236
Bpu10I CCTNAGC 1 cut(s) 186
Bpu1102I GCTNAGC 1 cut(s) 284
BpuMI CCSGG 2 cut(s) 83, 100
BsaJI CCNNGG 1 cut(s) 245
BsaWI WCCGGW 2 cut(s) 148, 371
Bse118I RCCGGY 3 cut(s) 68, 113, 148
Bse1I ACTGG 2 cut(s) 256, 370
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 2 cut(s) 252, 336
BseMII CTCAG 2 cut(s) 177, 275
BseNI ACTGG 2 cut(s) 256, 370
BseRI GAGGAG 1 cut(s) 293
BseX3I CGGCCG 1 cut(s) 88
BseXI GCAGC 4 cut(s) 72, 169, 199, 279
BseYI CCCAGC 1 cut(s) 203
Bsh1285I CGRYCG 2 cut(s) 87, 91
BshFI GGCC 5 cut(s) 5, 68, 90, 263, 384
BshNI GGYRCC 2 cut(s) 32, 368
BshTI ACCGGT 1 cut(s) 148
BsiEI CGRYCG 2 cut(s) 87, 91
BsiHKCI CYCGRG 1 cut(s) 216
BsiSI CCGG 7 cut(s) 6, 69, 83, 100, 114, 149, 372
BsnI GGCC 5 cut(s) 5, 68, 90, 263, 384
BsoBI CYCGRG 1 cut(s) 216
Bsp1720I GCTNAGC 1 cut(s) 284
BspACI CCGC 2 cut(s) 36, 162
BspANI GGCC 5 cut(s) 5, 68, 90, 263, 384
BspCNI CTCAG 2 cut(s) 178, 276
BspLI GGNNCC 4 cut(s) 34, 301, 370, 385
BspT107I GGYRCC 2 cut(s) 32, 368
BsrFI RCCGGY 3 cut(s) 68, 113, 148
BsrI ACTGG 2 cut(s) 256, 370
BssAI RCCGGY 3 cut(s) 68, 113, 148
BssECI CCNNGG 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 4
BstC8I GCNNGC 3 cut(s) 115, 142, 290
BstDEI CTNAG 3 cut(s) 186, 284, 357
BstF5I GGATG 2 cut(s) 252, 336
BstHHI GCGC 1 cut(s) 146
BstMCI CGRYCG 2 cut(s) 87, 91
BstMWI GCNNNNNNNGC 3 cut(s) 44, 209, 289
BstNSI RCATGY 1 cut(s) 349
BstSCI CCNGG 2 cut(s) 81, 98
BstV1I GCAGC 4 cut(s) 72, 169, 199, 279
BstV2I GAAGAC 1 cut(s) 236
BstZI CGGCCG 1 cut(s) 88
BsuRI GGCC 5 cut(s) 5, 68, 90, 263, 384
BtgZI GCGATG 1 cut(s) 295
BtsCI GGATG 2 cut(s) 252, 336
Cac8I GCNNGC 3 cut(s) 115, 142, 290
CfoI GCGC 1 cut(s) 146
Cfr10I RCCGGY 3 cut(s) 68, 113, 148
Cfr13I GGNCC 1 cut(s) 383
Csp6I GTAC 1 cut(s) 121
CspAI ACCGGT 1 cut(s) 148
CviAII CATG 1 cut(s) 346
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 3 cut(s) 186, 284, 357
EaeI YGGCCR 3 cut(s) 3, 88, 261
EagI CGGCCG 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 4
EarI CTCTTC 1 cut(s) 4
EclXI CGGCCG 1 cut(s) 88
Eco52I CGGCCG 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 216
FaeI CATG 1 cut(s) 349
FaiI YATR 2 cut(s) 329, 347
FatI CATG 1 cut(s) 345
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 6 cut(s) 36, 61, 162, 183, 213, 293
FokI GGATG 2 cut(s) 239, 323
Fsp4HI GCNGC 6 cut(s) 36, 61, 162, 183, 213, 293
FspBI CTAG 1 cut(s) 397
GlaI GCGC 1 cut(s) 145
GluI GCNGC 6 cut(s) 36, 61, 162, 183, 213, 293
GsaI CCCAGC 1 cut(s) 207
HaeIII GGCC 5 cut(s) 5, 68, 90, 263, 384
HapII CCGG 7 cut(s) 6, 69, 83, 100, 114, 149, 372
HhaI GCGC 1 cut(s) 146
Hin1II CATG 1 cut(s) 349
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HinfI GANTC 1 cut(s) 132
HpaII CCGG 7 cut(s) 6, 69, 83, 100, 114, 149, 372
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 391
Hpy188III TCNNGA 3 cut(s) 106, 218, 268
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 209, 289
HpyF3I CTNAG 3 cut(s) 186, 284, 357
Hsp92II CATG 1 cut(s) 349
HspAI GCGC 1 cut(s) 144
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
LmnI GCTCC 2 cut(s) 280, 305
Lsp1109I GCAGC 4 cut(s) 72, 169, 199, 279
MaeI CTAG 1 cut(s) 397
MaeIII GTNAC 1 cut(s) 304
MboII GAAGA 2 cut(s) 21, 241
MfeI CAATTG 1 cut(s) 21
MluCI AATT 3 cut(s) 21, 77, 197
MlyI GAGTC 1 cut(s) 141
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 8 cut(s) 5, 167, 179, 181, 228, 240, 271, 397
MroNI GCCGGC 1 cut(s) 113
MspI CCGG 7 cut(s) 6, 69, 83, 100, 114, 149, 372
MspR9I CCNGG 2 cut(s) 83, 100
MunI CAATTG 1 cut(s) 21
MwoI GCNNNNNNNGC 3 cut(s) 44, 209, 289
NaeI GCCGGC 1 cut(s) 115
NciI CCSGG 2 cut(s) 83, 100
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 1 cut(s) 349
NlaIV GGNNCC 4 cut(s) 34, 301, 370, 385
NmeAIII GCCGAG 3 cut(s) 151, 270, 276
NmuCI GTSAC 1 cut(s) 304
NspI RCATGY 1 cut(s) 349
PdiI GCCGGC 1 cut(s) 115
PinAI ACCGGT 1 cut(s) 148
PkrI GCNGC 6 cut(s) 37, 62, 163, 184, 214, 294
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PspFI CCCAGC 1 cut(s) 203
PspN4I GGNNCC 4 cut(s) 34, 301, 370, 385
PspPI GGNCC 1 cut(s) 383
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SatI GCNGC 6 cut(s) 36, 61, 162, 183, 213, 293
Sau96I GGNCC 1 cut(s) 383
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 2 cut(s) 83, 100
SetI ASST 4 cut(s) 159, 192, 285, 294
Sse9I AATT 3 cut(s) 21, 77, 197
SsiI CCGC 2 cut(s) 36, 162
SspMI CTAG 1 cut(s) 397
StyD4I CCNGG 2 cut(s) 81, 98
TaqI TCGA 1 cut(s) 171
TasI AATT 3 cut(s) 21, 77, 197
TauI GCSGC 2 cut(s) 38, 164
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 4 cut(s) 60, 182, 212, 292
Tsp45I GTSAC 1 cut(s) 304
TspGWI ACGGA 1 cut(s) 292
XceI RCATGY 1 cut(s) 349
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.