Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001504

Physical Location & Seq

Genomic Coordinates Forward (+)

7229390 .. 7230146

Gene Structure 757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCGGGTCGCGGCAAAACTCTCGGATCTGGCGTTGCTAAGAAATCAACATCGAGAAGCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGTATCGCTCGTTTTCTAAAGAACGGCAAGTACGCAACACGTGTTGGTGCCGGAGCTCCGGTTTACTTAGCCGCCGTTCTCGAATACCTCGCCGCTGAGGTATTGGAATTGGCTGGAAACGCAGCTAGGGATAACAAGAAGACTAGGATTGTGCCACGTCACATTCAGCTCGCGGTGAGAAACGATGAGGAGCTGAGTAAACTGCTTGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTCACAGTCTTCTTCTTCCCAAGAAAGCTGGTGCTTCAAAACCTTCCGCTGATGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006950 GO:0006996 GO:0008150 GO:0009292 GO:0009294 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

132

Amino Acids

13.85

Weight (kDa)

10.16

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	14 - 90	7.9e-15	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	93 - 126	1.4e-18	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51060 AT3G20670 AT4G27230 AT4G27230 AT5G54640
fragaria_vesca	FvH4_3g02940 FvH4_3g21650
malus_domestica	MD03G1213800.v1.1 MD03G1238000.v1.1 MD05G1335800.v1.1 MD10G1311400.v1.1
prunus_persica	Prupe.4G029500_v2.0.a1 Prupe.4G200700_v2.0.a1
pyrus_communis	pycom03g16220 pycom05g30720 pycom10g26260 pycom11g20100
rosa_chinensis	RchiOBHm_Chr1g0369691 RchiOBHm_Chr5g0004551 RchiOBHm_Chr5g0031581 RchiOBHm_Chr5g0037131 RchiOBHm_Chr5g0054271 RchiOBHm_Chr6g0246221 RchiOBHm_Chr6g0272401
rosa_laevigata	RLG00000031239 RLG00000033752
rosa_multiflora	Rmu_co8073734.1_g000001 Rmu_sc0002354.1_g000017 Rmu_sc0003758.1_g000011 Rmu_sc0004802.1_g000002 Rmu_sc0018628.1_g000004 Rmu_sc0042798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043850 Rroxscaffold_1G00070980
rosa_rugosa	Rorug04G0412200 Rorug05G0160900 Rorug05G0310600 Rorug05G0519700
rosa_samantha	Rh4BG384100 Rh4CG398800 Rh5BG039700 Rh5BG254500 Rh5CG043400 Rh5CG287000 Rh5DG039200 Rh5DG262900 Rh6AG354100 Rh6CG397000
rosa_wichuraiana	Rw4G018680 Rw5G003870 Rw5G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AccII	CGCG	2 cut(s)	12, 263
AciI	CCGC	6 cut(s)	5, 12, 162, 183, 263, 384
AclWI	GGATC	1 cut(s)	34
AcvI	CACGTG	1 cut(s)	131
AfaI	GTAC	1 cut(s)	122
AflIII	ACRYGT	2 cut(s)	128, 130
AgsI	TTSAA	1 cut(s)	375
AjiI	CACGTC	1 cut(s)	248
AluBI	AGCT	5 cut(s)	146, 215, 259, 283, 365
AluI	AGCT	5 cut(s)	146, 215, 259, 283, 365
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	60, 212
AsuHPI	GGTGA	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	148
BbrPI	CACGTG	1 cut(s)	131
BbsI	GAAGAC	2 cut(s)	236, 338
Bbv12I	GWGCWC	1 cut(s)	148
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	72, 224
BceAI	ACGGC	2 cut(s)	130, 149
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	2 cut(s)	216, 234
BisI	GCNGC	5 cut(s)	13, 61, 162, 183, 213
BlsI	GCNGC	5 cut(s)	14, 62, 163, 184, 214
BmgBI	CACGTC	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	139
BmsI	GCATC	1 cut(s)	318
BpiI	GAAGAC	2 cut(s)	236, 338
Bpu10I	CCTNAGC	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	77
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bse118I	RCCGGY	1 cut(s)	68
BseMII	CTCAG	2 cut(s)	177, 275
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	72, 224
Bsh1236I	CGCG	2 cut(s)	12, 263
BshNI	GGYRCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	3 cut(s)	69, 141, 149
BsmAI	GTCTC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	26
BspACI	CCGC	6 cut(s)	5, 12, 162, 183, 263, 384
BspCNI	CTCAG	2 cut(s)	178, 276
BspFNI	CGCG	2 cut(s)	12, 263
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssMI	GATC	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	4 cut(s)	39, 157, 186, 284
BstFNI	CGCG	2 cut(s)	12, 263
BstKTI	GATC	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstUI	CGCG	2 cut(s)	12, 263
BstV1I	GCAGC	2 cut(s)	72, 224
BstV2I	GAAGAC	2 cut(s)	236, 338
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BtrI	CACGTC	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	261
Cfr10I	RCCGGY	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	121
CviJI	RGCY	8 cut(s)	68, 146, 161, 203, 215, 259, 283, 365
CviKI_1	RGCY	8 cut(s)	68, 146, 161, 203, 215, 259, 283, 365
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	4 cut(s)	39, 157, 186, 284
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	146
Eco72I	CACGTG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	148
Fnu4HI	GCNGC	5 cut(s)	13, 61, 162, 183, 213
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	5 cut(s)	13, 61, 162, 183, 213
FspBI	CTAG	2 cut(s)	216, 234
GluI	GCNGC	5 cut(s)	13, 61, 162, 183, 213
HapII	CCGG	3 cut(s)	69, 141, 149
HpaII	CCGG	3 cut(s)	69, 141, 149
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	2 cut(s)	154, 290
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	2 cut(s)	54, 170
Hpy8I	GTNNAC	2 cut(s)	154, 290
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	2 cut(s)	130, 247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	4 cut(s)	39, 157, 186, 284
HpySE526I	ACGT	2 cut(s)	130, 247
Kzo9I	GATC	1 cut(s)	26
LmnI	GCTCC	3 cut(s)	143, 151, 280
LpnPI	CCDG	6 cut(s)	15, 82, 154, 162, 189, 351
Lsp1109I	GCAGC	2 cut(s)	72, 224
LweI	GCATC	1 cut(s)	318
MaeI	CTAG	2 cut(s)	216, 234
MaeII	ACGT	2 cut(s)	130, 247
MaeIII	GTNAC	2 cut(s)	248, 304
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	4 cut(s)	241, 338, 341, 344
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	2 cut(s)	77, 197
MnlI	CCTC	4 cut(s)	181, 188, 271, 314
MspA1I	CMGCKG	2 cut(s)	185, 386
MspI	CCGG	3 cut(s)	69, 141, 149
MvnI	CGCG	2 cut(s)	12, 263
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeII	GATC	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	2 cut(s)	248, 304
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 97
PkrI	GCNGC	5 cut(s)	14, 62, 163, 184, 214
PmaCI	CACGTG	1 cut(s)	131
PmlI	CACGTG	1 cut(s)	131
Ppu21I	YACGTR	1 cut(s)	131
Psp124BI	GAGCTC	1 cut(s)	148
PspCI	CACGTG	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	139
PsrI	GAACNNNNNNTAC	2 cut(s)	104, 136
PsuI	RGATCY	1 cut(s)	26
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	148
SatI	GCNGC	5 cut(s)	13, 61, 162, 183, 213
Sau3AI	GATC	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	318
Sse9I	AATT	2 cut(s)	77, 197
SsiI	CCGC	6 cut(s)	5, 12, 162, 183, 263, 384
SspMI	CTAG	2 cut(s)	216, 234
SstI	GAGCTC	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	2 cut(s)	133, 250
TaqI	TCGA	2 cut(s)	53, 171
TasI	AATT	2 cut(s)	77, 197
TauI	GCSGC	3 cut(s)	15, 164, 185
TseFI	GTSAC	2 cut(s)	248, 304
TseI	GCWGC	2 cut(s)	60, 212
Tsp45I	GTSAC	2 cut(s)	248, 304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	83
XspI	CTAG	2 cut(s)	216, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.