Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001504

Physical Location & Seq

Genomic Coordinates Reverse (-)

39630617 .. 39631403

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1311400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCCGGAAGAGGAAAATCAATCGGCTCCGGCACCGCCAAGAAGGCCACTTCTCGGAGCAGCAAGGCCGGTCTCCAGTTCCCCGTAGGCCGTATCGCCCGGTTTTTGAAAGCTGGCAAGTACGCCGAGCGTGTTGGCGCCGGCGCCCCTGTCTACCTCGCCGCCGTCCTTGAATACCTCGCCGCAGAGGTTTTGGAATTGGCCGGAAACGCCGCACGTGACAACAAGAAGACGAGGATTGTGCCGAGGCACATCCAGCTGGCCGTCAGGAACGACGAGGAGCTCAGCAAGCTGCTCGGCGCCGTCACCATCGCCAACGGCGGCGTTATGCCCAACATCCACAACATGCTCCTCCCCAAGAAAACCGGCACCGGCAAATCTGGCCCCGCCGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

133

Amino Acids

13.78

Weight (kDa)

10.28

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	13 - 90	3.4e-14	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	93 - 126	1.6e-18	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51060 AT3G20670 AT4G27230 AT4G27230 AT5G54640
fragaria_vesca	FvH4_3g02940 FvH4_3g21650
malus_domestica	MD03G1213800.v1.1 MD03G1238000.v1.1 MD05G1335800.v1.1 MD10G1311400.v1.1
prunus_persica	Prupe.4G029500_v2.0.a1 Prupe.4G200700_v2.0.a1
pyrus_communis	pycom03g16220 pycom05g30720 pycom10g26260 pycom11g20100
rosa_chinensis	RchiOBHm_Chr1g0369691 RchiOBHm_Chr5g0004551 RchiOBHm_Chr5g0031581 RchiOBHm_Chr5g0037131 RchiOBHm_Chr5g0054271 RchiOBHm_Chr6g0246221 RchiOBHm_Chr6g0272401
rosa_laevigata	RLG00000031239 RLG00000033752
rosa_multiflora	Rmu_co8073734.1_g000001 Rmu_sc0002354.1_g000017 Rmu_sc0003758.1_g000011 Rmu_sc0004802.1_g000002 Rmu_sc0018628.1_g000004 Rmu_sc0042798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043850 Rroxscaffold_1G00070980
rosa_rugosa	Rorug04G0412200 Rorug05G0160900 Rorug05G0310600 Rorug05G0519700
rosa_samantha	Rh4BG384100 Rh4CG398800 Rh5BG039700 Rh5BG254500 Rh5CG043400 Rh5CG287000 Rh5DG039200 Rh5DG262900 Rh6AG354100 Rh6CG397000
rosa_wichuraiana	Rw4G018680 Rw5G003870 Rw5G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	5 cut(s)	32, 137, 143, 299, 368
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	6 cut(s)	36, 162, 183, 213, 321, 387
AcoI	YGGCCR	3 cut(s)	3, 201, 261
AcvI	CACGTG	1 cut(s)	218
AcyI	GRCGYC	3 cut(s)	138, 144, 300
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	2 cut(s)	109, 173
AluBI	AGCT	4 cut(s)	113, 259, 283, 292
AluI	AGCT	4 cut(s)	113, 259, 283, 292
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	77
AoxI	GGCC	7 cut(s)	3, 45, 66, 88, 201, 261, 382
ApeKI	GCWGC	2 cut(s)	60, 292
AspLEI	GCGC	3 cut(s)	140, 146, 302
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	298
BanI	GGYRCC	5 cut(s)	32, 137, 143, 299, 368
BanII	GRGCYC	1 cut(s)	285
BbrPI	CACGTG	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	72, 279
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	5 cut(s)	75, 149, 248, 287, 334
BcgI	CGANNNNNNTGC	4 cut(s)	223, 257, 277, 311
BcnI	CCSGG	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	77
BfoI	RGCGCY	3 cut(s)	141, 147, 303
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	6 cut(s)	61, 162, 183, 213, 293, 322
BlpI	GCTNAGC	1 cut(s)	284
BlsI	GCNGC	6 cut(s)	62, 163, 184, 214, 294, 323
Bme1390I	CCNGG	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	7 cut(s)	28, 34, 139, 145, 301, 370, 385
BmrFI	CCNGG	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	236
BpmI	CTGGAG	1 cut(s)	59
Bpu1102I	GCTNAGC	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	100
BsaAI	YACGTR	1 cut(s)	218
BsaHI	GRCGYC	3 cut(s)	138, 144, 300
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse118I	RCCGGY	4 cut(s)	68, 140, 365, 371
Bse1I	ACTGG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	2 cut(s)	252, 336
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	298
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	2 cut(s)	293, 341
BseXI	GCAGC	2 cut(s)	72, 279
BshFI	GGCC	7 cut(s)	5, 47, 68, 90, 203, 263, 384
BshNI	GGYRCC	5 cut(s)	32, 137, 143, 299, 368
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	8 cut(s)	6, 30, 69, 100, 141, 204, 366, 372
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	77
BsnI	GGCC	7 cut(s)	5, 47, 68, 90, 203, 263, 384
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp1720I	GCTNAGC	1 cut(s)	284
BspACI	CCGC	6 cut(s)	36, 162, 183, 213, 321, 387
BspANI	GGCC	7 cut(s)	5, 47, 68, 90, 203, 263, 384
BspCNI	CTCAG	1 cut(s)	297
BspLI	GGNNCC	7 cut(s)	28, 34, 139, 145, 301, 370, 385
BspT107I	GGYRCC	5 cut(s)	32, 137, 143, 299, 368
BspTNI	GGTCTC	1 cut(s)	77
BsrFI	RCCGGY	4 cut(s)	68, 140, 365, 371
BsrI	ACTGG	1 cut(s)	76
BssAI	RCCGGY	4 cut(s)	68, 140, 365, 371
BssECI	CCNNGG	1 cut(s)	245
BssNI	GRCGYC	3 cut(s)	138, 144, 300
Bst6I	CTCTTC	1 cut(s)	4
BstACI	GRCGYC	3 cut(s)	138, 144, 300
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	4 cut(s)	115, 142, 261, 290
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	252, 336
BstH2I	RGCGCY	3 cut(s)	141, 147, 303
BstHHI	GCGC	3 cut(s)	140, 146, 302
BstMAI	GTCTC	1 cut(s)	77
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 209, 256, 289, 381
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	72, 279
BstV2I	GAAGAC	1 cut(s)	236
BsuRI	GGCC	7 cut(s)	5, 47, 68, 90, 203, 263, 384
BtgZI	GCGATG	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	252, 336
Cac8I	GCNNGC	4 cut(s)	115, 142, 261, 290
CfoI	GCGC	3 cut(s)	140, 146, 302
Cfr10I	RCCGGY	4 cut(s)	68, 140, 365, 371
Cfr13I	GGNCC	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	346
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	284
DinI	GGCGCC	3 cut(s)	139, 145, 301
EaeI	YGGCCR	3 cut(s)	3, 201, 261
Eam1104I	CTCTTC	1 cut(s)	4
EarI	CTCTTC	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	283
Eco72I	CACGTG	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	285
EgeI	GGCGCC	3 cut(s)	139, 145, 301
EheI	GGCGCC	3 cut(s)	139, 145, 301
FaeI	CATG	1 cut(s)	349
FaiI	YATR	2 cut(s)	329, 347
FatI	CATG	1 cut(s)	345
FauI	CCCGC	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	6 cut(s)	61, 162, 183, 213, 293, 322
FokI	GGATG	2 cut(s)	239, 323
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	6 cut(s)	61, 162, 183, 213, 293, 322
GlaI	GCGC	3 cut(s)	139, 145, 301
GluI	GCNGC	6 cut(s)	61, 162, 183, 213, 293, 322
GsuI	CTGGAG	1 cut(s)	59
HaeII	RGCGCY	3 cut(s)	141, 147, 303
HaeIII	GGCC	7 cut(s)	5, 47, 68, 90, 203, 263, 384
HapII	CCGG	8 cut(s)	6, 30, 69, 100, 141, 204, 366, 372
HhaI	GCGC	3 cut(s)	140, 146, 302
Hin1I	GRCGYC	3 cut(s)	138, 144, 300
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	3 cut(s)	138, 144, 300
HinP1I	GCGC	3 cut(s)	138, 144, 300
HpaII	CCGG	8 cut(s)	6, 30, 69, 100, 141, 204, 366, 372
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	1 cut(s)	268
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 209, 256, 289, 381
HpyF3I	CTNAG	1 cut(s)	284
HpySE526I	ACGT	1 cut(s)	217
Hsp92I	GRCGYC	3 cut(s)	138, 144, 300
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	3 cut(s)	138, 144, 300
KasI	GGCGCC	3 cut(s)	137, 143, 299
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
LmnI	GCTCC	4 cut(s)	32, 57, 280, 354
Lsp1109I	GCAGC	2 cut(s)	72, 279
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	2 cut(s)	218, 304
MboII	GAAGA	2 cut(s)	21, 241
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	1 cut(s)	197
Mly113I	GGCGCC	3 cut(s)	138, 144, 300
MnlI	CCTC	8 cut(s)	5, 167, 181, 188, 228, 240, 271, 362
MreI	CGCCGGCG	1 cut(s)	140
MroNI	GCCGGC	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	259
MspI	CCGG	8 cut(s)	6, 30, 69, 100, 141, 204, 366, 372
MspR9I	CCNGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	5 cut(s)	44, 209, 256, 289, 381
NaeI	GCCGGC	1 cut(s)	142
NarI	GGCGCC	3 cut(s)	138, 144, 300
NciI	CCSGG	1 cut(s)	100
NgoMIV	GCCGGC	1 cut(s)	140
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	7 cut(s)	28, 34, 139, 145, 301, 370, 385
NmeAIII	GCCGAG	3 cut(s)	151, 270, 276
NmuCI	GTSAC	2 cut(s)	218, 304
NspI	RCATGY	1 cut(s)	349
PdiI	GCCGGC	1 cut(s)	142
PkrI	GCNGC	6 cut(s)	62, 163, 184, 214, 294, 323
PluTI	GGCGCC	3 cut(s)	141, 147, 303
PmaCI	CACGTG	1 cut(s)	218
PmlI	CACGTG	1 cut(s)	218
Ppu21I	YACGTR	1 cut(s)	218
Psp124BI	GAGCTC	1 cut(s)	285
PspCI	CACGTG	1 cut(s)	218
PspN4I	GGNNCC	7 cut(s)	28, 34, 139, 145, 301, 370, 385
PspPI	GGNCC	1 cut(s)	383
PvuII	CAGCTG	1 cut(s)	259
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	285
SatI	GCNGC	6 cut(s)	61, 162, 183, 213, 293, 322
Sau96I	GGNCC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	8 cut(s)	115, 159, 180, 192, 220, 261, 285, 294
SfoI	GGCGCC	3 cut(s)	139, 145, 301
SgrAI	CRCCGGYG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	6 cut(s)	36, 162, 183, 213, 321, 387
SspDI	GGCGCC	3 cut(s)	137, 143, 299
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	98
TaiI	ACGT	1 cut(s)	220
TasI	AATT	1 cut(s)	197
TauI	GCSGC	4 cut(s)	164, 185, 215, 324
TseFI	GTSAC	2 cut(s)	218, 304
TseI	GCWGC	2 cut(s)	60, 292
Tsp45I	GTSAC	2 cut(s)	218, 304
XceI	RCATGY	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.