Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001504

Physical Location & Seq

Genomic Coordinates Reverse (-)

58403894 .. 58404196

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG397000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTGCCATGTTGGCAATCCGCGTGACCTTGCTCTTAACCAATCAGCGCACAGCATCGGGTCCCATATATTAGAACCCCACTGCTCTACTAATTCCATCACAGAGCAACTCCCAACCCACACTCTCTCTCAAATCAAGTCTCTGTCCAGGTCAAGCAAAGCTGGGCTTCAATTTCCGGTGGGTAGGATCGTCCGGTTTCTTAAGTCTGGCAAGTACGTCGAGCGTGTCGGCGCCGGAGCTCCAGTGTATCTTTCAGCTGTCCTCGAATACCAGGCTGCCGAGGTGAATTTTAATTTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

100

Amino Acids

10.87

Weight (kDa)

9.14

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51060 AT3G20670 AT4G27230 AT4G27230 AT5G54640
fragaria_vesca	FvH4_3g02940 FvH4_3g21650
malus_domestica	MD03G1213800.v1.1 MD03G1238000.v1.1 MD05G1335800.v1.1 MD10G1311400.v1.1
prunus_persica	Prupe.4G029500_v2.0.a1 Prupe.4G200700_v2.0.a1
pyrus_communis	pycom03g16220 pycom05g30720 pycom10g26260 pycom11g20100
rosa_chinensis	RchiOBHm_Chr1g0369691 RchiOBHm_Chr5g0004551 RchiOBHm_Chr5g0031581 RchiOBHm_Chr5g0037131 RchiOBHm_Chr5g0054271 RchiOBHm_Chr6g0246221 RchiOBHm_Chr6g0272401
rosa_laevigata	RLG00000031239 RLG00000033752
rosa_multiflora	Rmu_co8073734.1_g000001 Rmu_sc0002354.1_g000017 Rmu_sc0003758.1_g000011 Rmu_sc0004802.1_g000002 Rmu_sc0018628.1_g000004 Rmu_sc0042798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043850 Rroxscaffold_1G00070980
rosa_rugosa	Rorug04G0412200 Rorug05G0160900 Rorug05G0310600 Rorug05G0519700
rosa_samantha	Rh4BG384100 Rh4CG398800 Rh5BG039700 Rh5BG254500 Rh5CG043400 Rh5CG287000 Rh5DG039200 Rh5DG262900 Rh6AG354100 Rh6CG397000
rosa_wichuraiana	Rw4G018680 Rw5G003870 Rw5G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AccII	CGCG	1 cut(s)	22
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	286
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	215
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	170
AjnI	CCWGG	2 cut(s)	146, 270
AluBI	AGCT	3 cut(s)	161, 239, 257
AluI	AGCT	3 cut(s)	161, 239, 257
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	286
AspLEI	GCGC	2 cut(s)	49, 233
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	1 cut(s)	104
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BciT130I	CCWGG	2 cut(s)	148, 272
BcoDI	GTCTC	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	234
BfrI	CTTAAG	1 cut(s)	200
BglI	GCCNNNNNGGC	1 cut(s)	12
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	148, 272
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	3 cut(s)	61, 62, 232
BmrFI	CCNGG	2 cut(s)	148, 272
BmsI	GCATC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	279
BsaWI	WCCGGW	2 cut(s)	175, 192
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bse1I	ACTGG	1 cut(s)	242
BseBI	CCWGG	2 cut(s)	148, 272
BseDI	CCNNGG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	262
BseYI	CCCAGC	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	22
BshNI	GGYRCC	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	3 cut(s)	176, 193, 234
BslFI	GGGAC	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	186
BspACI	CCGC	1 cut(s)	20
BspFNI	CGCG	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	61, 62, 232
BspPI	GGATC	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	230
BspTI	CTTAAG	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	1 cut(s)	186
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	148, 272
BstACI	GRCGYC	1 cut(s)	231
BstAFI	CTTAAG	1 cut(s)	200
BstFNI	CGCG	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	2 cut(s)	49, 233
BstKTI	GATC	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNI	CCWGG	2 cut(s)	148, 272
BstSCI	CCNGG	2 cut(s)	146, 270
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	262
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	79, 249
CfoI	GCGC	2 cut(s)	49, 233
Cfr13I	GGNCC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	5 cut(s)	161, 166, 239, 257, 275
CviKI_1	RGCY	5 cut(s)	161, 166, 239, 257, 275
CviQI	GTAC	1 cut(s)	214
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	60
EcoRII	CCWGG	2 cut(s)	146, 270
EcoT38I	GRGCYC	1 cut(s)	241
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
FaeI	CATG	1 cut(s)	11
FaiI	YATR	3 cut(s)	9, 66, 68
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	276
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	1 cut(s)	276
GlaI	GCGC	2 cut(s)	48, 232
GluI	GCNGC	1 cut(s)	276
GsaI	CCCAGC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	225
HaeII	RGCGCY	1 cut(s)	234
HapII	CCGG	3 cut(s)	176, 193, 234
HhaI	GCGC	2 cut(s)	49, 233
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	11
Hin6I	GCGC	2 cut(s)	47, 231
HinP1I	GCGC	2 cut(s)	47, 231
HpaII	CCGG	3 cut(s)	176, 193, 234
HphI	GGTGA	1 cut(s)	295
Hpy99I	CGWCG	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	216
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	11
HspAI	GCGC	2 cut(s)	47, 231
KasI	GGCGCC	1 cut(s)	230
KflI	GGGWCCC	1 cut(s)	60
Kzo9I	GATC	1 cut(s)	186
LmnI	GCTCC	2 cut(s)	236, 244
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	1 cut(s)	63
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	4 cut(s)	91, 170, 286, 292
Mly113I	GGCGCC	1 cut(s)	231
MnlI	CCTC	2 cut(s)	272, 274
MseI	TTAA	4 cut(s)	36, 201, 291, 301
MspA1I	CMGCKG	1 cut(s)	257
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	3 cut(s)	176, 193, 234
MspR9I	CCNGG	2 cut(s)	148, 272
MvaI	CCWGG	2 cut(s)	148, 272
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	12
NarI	GGCGCC	1 cut(s)	231
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	1 cut(s)	11
NlaIV	GGNNCC	3 cut(s)	61, 62, 232
NmuCI	GTSAC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	277
PluTI	GGCGCC	1 cut(s)	234
PpuMI	RGGWCCY	1 cut(s)	60
Psp124BI	GAGCTC	1 cut(s)	241
Psp5II	RGGWCCY	1 cut(s)	60
Psp6I	CCWGG	2 cut(s)	146, 270
PspFI	CCCAGC	1 cut(s)	161
PspGI	CCWGG	2 cut(s)	146, 270
PspN4I	GGNNCC	3 cut(s)	61, 62, 232
PspPI	GGNCC	1 cut(s)	60
PspPPI	RGGWCCY	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SacI	GAGCTC	1 cut(s)	241
SaqAI	TTAA	4 cut(s)	36, 201, 291, 301
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	148, 272
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	7 cut(s)	30, 152, 163, 219, 241, 259, 285
SfaNI	GCATC	1 cut(s)	63
SfoI	GGCGCC	1 cut(s)	232
SinI	GGWCC	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	4 cut(s)	91, 170, 286, 292
SsiI	CCGC	1 cut(s)	20
SspDI	GGCGCC	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	241
StyD4I	CCNGG	2 cut(s)	146, 270
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	219, 264
TasI	AATT	4 cut(s)	91, 170, 286, 292
Tru1I	TTAA	4 cut(s)	36, 201, 291, 301
Tru9I	TTAA	4 cut(s)	36, 201, 291, 301
TscAI	CASTG	2 cut(s)	86, 249
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	23
TspRI	CASTG	2 cut(s)	86, 249
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.