RchiOBHm_Chr6g0272401

histone H2A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001504
Physical Location & Seq
Reverse (-)
32676698 .. 32677257
560 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24438

Sequence Viewer

Length: 255 bp
ATGTCCAGGTCAAGCAAAGCTGGGCTTCAATTATCGGTGGGTAGGACCGCCCGGTTTCTTAAGTCCGGCCAGTACGCTGTGCGTGTCGGCGCCAGAGCTCCGGTGTATCTTTCGGTTGTCTTGAATACCTGGCTGCTAAGACTGGAAATTATTGGGTTTAAGGTTTTGGAGCTTGCTTGCAACGCAACTAGGGACAACAACAAGAACCGTATTGTACCGAGGTGTACAATCTCAAATCAGCTATGGTTTTTGTAG

Protein Analysis

84

Amino Acids

9.45

Weight (kDa)

11.24

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 89
AciI CCGC 1 cut(s) 48
AcoI YGGCCR 1 cut(s) 67
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 3 cut(s) 74, 216, 226
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 2 cut(s) 29, 124
AjnI CCWGG 2 cut(s) 5, 128
AluBI AGCT 4 cut(s) 20, 98, 172, 241
AluI AGCT 4 cut(s) 20, 98, 172, 241
Alw21I GWGCWC 1 cut(s) 100
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 133
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 45
AsuC2I CCSGG 1 cut(s) 52
AvaII GGWCC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 100
BbvI GCAGC 1 cut(s) 120
BciT130I CCWGG 2 cut(s) 7, 130
BcnI CCSGG 1 cut(s) 52
BfaI CTAG 1 cut(s) 189
BfoI RGCGCY 1 cut(s) 93
BfrI CTTAAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 3 cut(s) 7, 52, 130
Bme18I GGWCC 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 3 cut(s) 7, 52, 130
BpuMI CCSGG 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 218
BsaWI WCCGGW 1 cut(s) 100
Bse1I ACTGG 2 cut(s) 70, 147
BseBI CCWGG 2 cut(s) 7, 130
BseDI CCNNGG 1 cut(s) 218
BseNI ACTGG 2 cut(s) 70, 147
BseXI GCAGC 1 cut(s) 120
BseYI CCCAGC 1 cut(s) 20
BshFI GGCC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 100
BsiSI CCGG 3 cut(s) 52, 66, 101
BslFI GGGAC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 100
Bsp1407I TGTACA 1 cut(s) 224
BspACI CCGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 91
BspT107I GGYRCC 1 cut(s) 89
BspTI CTTAAG 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 224
BsrI ACTGG 2 cut(s) 70, 147
BssECI CCNNGG 1 cut(s) 218
BssNI GRCGYC 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 7, 130
Bst4CI ACNGT 1 cut(s) 209
BstACI GRCGYC 1 cut(s) 90
BstAFI CTTAAG 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 174, 178
BstDEI CTNAG 1 cut(s) 137
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 2 cut(s) 7, 130
BstSCI CCNGG 3 cut(s) 5, 50, 128
BstV1I GCAGC 1 cut(s) 120
BsuRI GGCC 1 cut(s) 69
Cac8I GCNNGC 2 cut(s) 174, 178
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 45
Csp6I GTAC 3 cut(s) 73, 215, 225
CviJI RGCY 7 cut(s) 20, 25, 69, 98, 133, 172, 241
CviKI_1 RGCY 7 cut(s) 20, 25, 69, 98, 133, 172, 241
CviQI GTAC 3 cut(s) 73, 215, 225
DdeI CTNAG 1 cut(s) 137
DinI GGCGCC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 5, 128
EcoT38I GRGCYC 1 cut(s) 100
EgeI GGCGCC 1 cut(s) 91
EheI GGCGCC 1 cut(s) 91
FaiI YATR 1 cut(s) 244
FalI AAGNNNNNCTT 2 cut(s) 9, 41
FaqI GGGAC 1 cut(s) 206
Fnu4HI GCNGC 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 1 cut(s) 189
GlaI GCGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 134
GsaI CCCAGC 1 cut(s) 24
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 1 cut(s) 69
HapII CCGG 3 cut(s) 52, 66, 101
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 90
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HpaII CCGG 3 cut(s) 52, 66, 101
Hpy166II GTNNAC 1 cut(s) 225
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 225
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4V TGCA 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 137
Hsp92I GRCGYC 1 cut(s) 90
HspAI GCGC 1 cut(s) 90
KasI GGCGCC 1 cut(s) 89
LmnI GCTCC 2 cut(s) 103, 169
Lsp1109I GCAGC 1 cut(s) 120
MaeI CTAG 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 100
MluCI AATT 2 cut(s) 29, 147
Mly113I GGCGCC 1 cut(s) 90
MnlI CCTC 1 cut(s) 213
MseI TTAA 2 cut(s) 60, 159
MspCI CTTAAG 1 cut(s) 59
MspI CCGG 3 cut(s) 52, 66, 101
MspR9I CCNGG 3 cut(s) 7, 52, 130
MvaI CCWGG 2 cut(s) 7, 130
MwoI GCNNNNNNNGC 1 cut(s) 182
NarI GGCGCC 1 cut(s) 90
NciI CCSGG 1 cut(s) 52
NlaIV GGNNCC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 135
PluTI GGCGCC 1 cut(s) 93
Psp124BI GAGCTC 1 cut(s) 100
Psp6I CCWGG 2 cut(s) 5, 128
PspFI CCCAGC 1 cut(s) 20
PspGI CCWGG 2 cut(s) 5, 128
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 1 cut(s) 45
RsaI GTAC 3 cut(s) 74, 216, 226
RsaNI GTAC 3 cut(s) 73, 215, 225
SacI GAGCTC 1 cut(s) 100
SaqAI TTAA 2 cut(s) 60, 159
SatI GCNGC 1 cut(s) 134
Sau96I GGNCC 1 cut(s) 45
ScrFI CCNGG 3 cut(s) 7, 52, 130
SduI GDGCHC 1 cut(s) 100
SetI ASST 8 cut(s) 11, 22, 100, 131, 165, 174, 224, 243
SfoI GGCGCC 1 cut(s) 91
SinI GGWCC 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 29, 147
SsiI CCGC 1 cut(s) 48
SspDI GGCGCC 1 cut(s) 89
SspMI CTAG 1 cut(s) 189
SstI GAGCTC 1 cut(s) 100
StyD4I CCNGG 3 cut(s) 5, 50, 128
TaaI ACNGT 1 cut(s) 209
TasI AATT 2 cut(s) 29, 147
TatI WGTACW 1 cut(s) 224
Tru1I TTAA 2 cut(s) 60, 159
Tru9I TTAA 2 cut(s) 60, 159
TseI GCWGC 1 cut(s) 133
Vha464I CTTAAG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 45
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.