Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001504

Physical Location & Seq

Genomic Coordinates Forward (+)

64795925 .. 64796492

Gene Structure 568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG398800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGTCCAGGTCAAGCAAAGCTGGGCTTCAATTTTCAGTGGGTAGGATTGCCCGGTTTCTTAAGTCCGGCCAGTACGCCGAGCGTGTCGGCGCCGGAGCTCCGGTGTATCTTTCGGCTATCCTTGAATACCTGGCTGCCGAGGAATTTAGGTTTTGGAGCTTGCTGGCAACGCAGCTAGGGACAACAAGAAGAACCGTATTGTACCGAGGTGTACAATCTCAAATCAGCTATGGTTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

80

Amino Acids

8.9

Weight (kDa)

10.35

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51060 AT3G20670 AT4G27230 AT4G27230 AT5G54640
fragaria_vesca	FvH4_3g02940 FvH4_3g21650
malus_domestica	MD03G1213800.v1.1 MD03G1238000.v1.1 MD05G1335800.v1.1 MD10G1311400.v1.1
prunus_persica	Prupe.4G029500_v2.0.a1 Prupe.4G200700_v2.0.a1
pyrus_communis	pycom03g16220 pycom05g30720 pycom10g26260 pycom11g20100
rosa_chinensis	RchiOBHm_Chr1g0369691 RchiOBHm_Chr5g0004551 RchiOBHm_Chr5g0031581 RchiOBHm_Chr5g0037131 RchiOBHm_Chr5g0054271 RchiOBHm_Chr6g0246221 RchiOBHm_Chr6g0272401
rosa_laevigata	RLG00000031239 RLG00000033752
rosa_multiflora	Rmu_co8073734.1_g000001 Rmu_sc0002354.1_g000017 Rmu_sc0003758.1_g000011 Rmu_sc0004802.1_g000002 Rmu_sc0018628.1_g000004 Rmu_sc0042798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043850 Rroxscaffold_1G00070980
rosa_rugosa	Rorug04G0412200 Rorug05G0160900 Rorug05G0310600 Rorug05G0519700
rosa_samantha	Rh4BG384100 Rh4CG398800 Rh5BG039700 Rh5BG254500 Rh5CG043400 Rh5CG287000 Rh5DG039200 Rh5DG262900 Rh6AG354100 Rh6CG397000
rosa_wichuraiana	Rw4G018680 Rw5G003870 Rw5G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	143
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	3 cut(s)	74, 203, 213
AflII	CTTAAG	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	29, 125
AjnI	CCWGG	2 cut(s)	5, 129
AluBI	AGCT	5 cut(s)	20, 98, 159, 175, 228
AluI	AGCT	5 cut(s)	20, 98, 159, 175, 228
Alw21I	GWGCWC	1 cut(s)	100
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	134, 172
ApoI	RAATTY	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	92
AsuC2I	CCSGG	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	121, 184
BciT130I	CCWGG	2 cut(s)	7, 131
BcnI	CCSGG	1 cut(s)	52
BfaI	CTAG	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	93
BfrI	CTTAAG	1 cut(s)	59
BisI	GCNGC	2 cut(s)	135, 173
BlsI	GCNGC	2 cut(s)	136, 174
Bme1390I	CCNGG	3 cut(s)	7, 52, 131
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	3 cut(s)	7, 52, 131
BpuMI	CCSGG	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	138, 205
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bse1I	ACTGG	1 cut(s)	70
BseBI	CCWGG	2 cut(s)	7, 131
BseDI	CCNNGG	2 cut(s)	138, 205
BseNI	ACTGG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	121, 184
BseYI	CCCAGC	1 cut(s)	20
BshFI	GGCC	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	100
BsiSI	CCGG	4 cut(s)	52, 66, 93, 101
BslFI	GGGAC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp1407I	TGTACA	1 cut(s)	211
BspANI	GGCC	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	89
BspTI	CTTAAG	1 cut(s)	59
BsrGI	TGTACA	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	138, 205
BssNI	GRCGYC	1 cut(s)	90
Bst2UI	CCWGG	2 cut(s)	7, 131
Bst4CI	ACNGT	1 cut(s)	196
BstACI	GRCGYC	1 cut(s)	90
BstAFI	CTTAAG	1 cut(s)	59
BstAUI	TGTACA	1 cut(s)	211
BstC8I	GCNNGC	2 cut(s)	161, 165
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstNI	CCWGG	2 cut(s)	7, 131
BstSCI	CCNGG	3 cut(s)	5, 50, 129
BstV1I	GCAGC	2 cut(s)	121, 184
BsuRI	GGCC	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	2 cut(s)	161, 165
CfoI	GCGC	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	73, 202, 212
CviJI	RGCY	9 cut(s)	20, 25, 69, 98, 116, 134, 159, 175, 228
CviKI_1	RGCY	9 cut(s)	20, 25, 69, 98, 116, 134, 159, 175, 228
CviQI	GTAC	3 cut(s)	73, 202, 212
DinI	GGCGCC	1 cut(s)	91
EaeI	YGGCCR	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	5, 129
EcoT38I	GRGCYC	1 cut(s)	100
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
FaiI	YATR	1 cut(s)	231
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FaqI	GGGAC	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	135, 173
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	2 cut(s)	135, 173
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	135, 173
GsaI	CCCAGC	1 cut(s)	24
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	4 cut(s)	52, 66, 93, 101
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HpaII	CCGG	4 cut(s)	52, 66, 93, 101
Hpy166II	GTNNAC	1 cut(s)	212
Hpy8I	GTNNAC	1 cut(s)	212
HpyCH4III	ACNGT	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
Hsp92I	GRCGYC	1 cut(s)	90
HspAI	GCGC	1 cut(s)	90
KasI	GGCGCC	1 cut(s)	89
LmnI	GCTCC	3 cut(s)	95, 103, 156
Lsp1109I	GCAGC	2 cut(s)	121, 184
MaeI	CTAG	1 cut(s)	176
MboII	GAAGA	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	2 cut(s)	29, 143
Mly113I	GGCGCC	1 cut(s)	90
MnlI	CCTC	2 cut(s)	133, 200
MseI	TTAA	1 cut(s)	60
MspCI	CTTAAG	1 cut(s)	59
MspI	CCGG	4 cut(s)	52, 66, 93, 101
MspR9I	CCNGG	3 cut(s)	7, 52, 131
MvaI	CCWGG	2 cut(s)	7, 131
MwoI	GCNNNNNNNGC	1 cut(s)	169
NarI	GGCGCC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	91
NmeAIII	GCCGAG	2 cut(s)	103, 163
PkrI	GCNGC	2 cut(s)	136, 174
PluTI	GGCGCC	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	100
Psp6I	CCWGG	2 cut(s)	5, 129
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	2 cut(s)	5, 129
PspN4I	GGNNCC	1 cut(s)	91
RsaI	GTAC	3 cut(s)	74, 203, 213
RsaNI	GTAC	3 cut(s)	73, 202, 212
SacI	GAGCTC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	2 cut(s)	135, 173
ScrFI	CCNGG	3 cut(s)	7, 52, 131
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	9 cut(s)	11, 22, 100, 132, 152, 161, 177, 211, 230
SfoI	GGCGCC	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	29, 143
SspDI	GGCGCC	1 cut(s)	89
SspMI	CTAG	1 cut(s)	176
SstI	GAGCTC	1 cut(s)	100
StyD4I	CCNGG	3 cut(s)	5, 50, 129
TaaI	ACNGT	1 cut(s)	196
TasI	AATT	2 cut(s)	29, 143
TatI	WGTACW	1 cut(s)	211
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	42
TseI	GCWGC	2 cut(s)	134, 172
TspRI	CASTG	1 cut(s)	42
Vha464I	CTTAAG	1 cut(s)	59
XapI	RAATTY	1 cut(s)	143
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.