Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004802.1

Orthogroup ID

OG0001504

Physical Location & Seq

Genomic Coordinates Forward (+)

5094 .. 5511

Gene Structure 418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004802.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

atggcgggtcgaggcaaagctttgggatctggggcggccaagaaggccacgtcgcggtccagcaaggccggtcttcaatttccggtggggcgtattgctcggttcttgaaggcagggaagtacgccgagcgagtcggtgccggagctccggtctacctcgccgccgtgcttgaatacctagccgctgaggttgtggcgatgaaatctggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

70

Amino Acids

7.08

Weight (kDa)

10.56

Isoelectric Point (pI)

29.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51060 AT3G20670 AT4G27230 AT4G27230 AT5G54640
fragaria_vesca	FvH4_3g02940 FvH4_3g21650
malus_domestica	MD03G1213800.v1.1 MD03G1238000.v1.1 MD05G1335800.v1.1 MD10G1311400.v1.1
prunus_persica	Prupe.4G029500_v2.0.a1 Prupe.4G200700_v2.0.a1
pyrus_communis	pycom03g16220 pycom05g30720 pycom10g26260 pycom11g20100
rosa_chinensis	RchiOBHm_Chr1g0369691 RchiOBHm_Chr5g0004551 RchiOBHm_Chr5g0031581 RchiOBHm_Chr5g0037131 RchiOBHm_Chr5g0054271 RchiOBHm_Chr6g0246221 RchiOBHm_Chr6g0272401
rosa_laevigata	RLG00000031239 RLG00000033752
rosa_multiflora	Rmu_co8073734.1_g000001 Rmu_sc0002354.1_g000017 Rmu_sc0003758.1_g000011 Rmu_sc0004802.1_g000002 Rmu_sc0018628.1_g000004 Rmu_sc0042798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043850 Rroxscaffold_1G00070980
rosa_rugosa	Rorug04G0412200 Rorug05G0160900 Rorug05G0310600 Rorug05G0519700
rosa_samantha	Rh4BG384100 Rh4CG398800 Rh5BG039700 Rh5BG254500 Rh5CG043400 Rh5CG287000 Rh5DG039200 Rh5DG262900 Rh6AG354100 Rh6CG397000
rosa_wichuraiana	Rw4G018680 Rw5G003870 Rw5G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	55
AciI	CCGC	5 cut(s)	5, 35, 55, 162, 183
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	1 cut(s)	36
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	3 cut(s)	77, 109, 173
AjiI	CACGTC	1 cut(s)	51
AluBI	AGCT	2 cut(s)	20, 146
AluI	AGCT	2 cut(s)	20, 146
Alw21I	GWGCWC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	3 cut(s)	36, 45, 66
AspS9I	GGNCC	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	148
BbvCI	CCTCAGC	1 cut(s)	186
BceAI	ACGGC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	179
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	3 cut(s)	36, 162, 183
BlsI	GCNGC	3 cut(s)	37, 163, 184
Bme18I	GGWCC	1 cut(s)	57
BmgBI	CACGTC	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	65
Bpu10I	CCTNAGC	1 cut(s)	186
BsaWI	WCCGGW	2 cut(s)	82, 148
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse118I	RCCGGY	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	177
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	3 cut(s)	38, 47, 68
BshNI	GGYRCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	4 cut(s)	69, 83, 141, 149
BslI	CCNNNNNNNGG	1 cut(s)	54
BsnI	GGCC	3 cut(s)	38, 47, 68
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	26
BspACI	CCGC	5 cut(s)	5, 35, 55, 162, 183
BspANI	GGCC	3 cut(s)	38, 47, 68
BspCNI	CTCAG	1 cut(s)	178
BspFNI	CGCG	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssMI	GATC	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	186
BstFNI	CGCG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstUI	CGCG	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	65
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	3 cut(s)	38, 47, 68
BtrI	CACGTC	1 cut(s)	51
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	121
CviJI	RGCY	6 cut(s)	20, 38, 47, 68, 146, 182
CviKI_1	RGCY	6 cut(s)	20, 38, 47, 68, 146, 182
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
EaeI	YGGCCR	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	36, 162, 183
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	3 cut(s)	36, 162, 183
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	3 cut(s)	36, 162, 183
HaeIII	GGCC	3 cut(s)	38, 47, 68
HapII	CCGG	4 cut(s)	69, 83, 141, 149
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	4 cut(s)	69, 83, 141, 149
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	2 cut(s)	37, 103
HpyCH4IV	ACGT	1 cut(s)	50
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	26
LmnI	GCTCC	2 cut(s)	143, 151
LpnPI	CCDG	8 cut(s)	15, 73, 82, 96, 99, 154, 162, 192
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	50
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	1 cut(s)	65
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	141
MnlI	CCTC	3 cut(s)	5, 167, 181
MseI	TTAA	1 cut(s)	211
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	4 cut(s)	69, 83, 141, 149
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	44
NdeII	GATC	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	151
PkrI	GCNGC	3 cut(s)	37, 163, 184
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	26
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	211
SatI	GCNGC	3 cut(s)	36, 162, 183
Sau3AI	GATC	1 cut(s)	26
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	6 cut(s)	22, 53, 148, 159, 180, 192
SfiI	GGCCNNNNNGGCC	1 cut(s)	44
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	1 cut(s)	77
SsiI	CCGC	5 cut(s)	5, 35, 55, 162, 183
SspMI	CTAG	1 cut(s)	179
SstI	GAGCTC	1 cut(s)	148
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	1 cut(s)	10
TasI	AATT	1 cut(s)	77
TauI	GCSGC	3 cut(s)	38, 164, 185
Tru1I	TTAA	1 cut(s)	211
Tru9I	TTAA	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	57
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.