Rmu_sc0042798.1_g000001

Histone H2A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042798.1
OG0001504
Physical Location & Seq
Reverse (-)
2 .. 387
386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042798.1_g000001.1.cds

Sequence Viewer

Length: 273 bp
atggccggaagaggcaaatcgctcggctccggcgccgccaagaaggcaacctctcgcagcagcaaagctggcctccaattccccgtcggccgtatcgctcgcttcctcaaatccggcaagtacgccgagcgcgtcggcgccggcgccccagtctacctcgctgcagtcctagaatacctcgccgccgaggttctggaactggccggaaatgcagccagggacaacaagaagactcggattgtgccacgtcacatccaattggccgtccggaac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04217 ko05034 ko05322 map04217 map05034 map05322
Pfam Domains
Protein Families
Histone Histone_H2A_C

Protein Analysis

91

Amino Acids

9.58

Weight (kDa)

11.05

Isoelectric Point (pI)

35.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 32, 137, 143
AccI GTMKAC 1 cut(s) 153
AccII CGCG 1 cut(s) 132
AccIII TCCGGA 1 cut(s) 267
AciI CCGC 2 cut(s) 36, 183
AcoI YGGCCR 4 cut(s) 3, 88, 201, 261
AcyI GRCGYC 3 cut(s) 33, 138, 144
AfaI GTAC 1 cut(s) 122
AjiI CACGTC 1 cut(s) 248
AjnI CCWGG 1 cut(s) 215
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Aor13HI TCCGGA 1 cut(s) 267
AoxI GGCC 5 cut(s) 3, 70, 88, 201, 261
ApeKI GCWGC 4 cut(s) 57, 60, 161, 212
AspLEI GCGC 4 cut(s) 35, 132, 140, 146
BanI GGYRCC 3 cut(s) 32, 137, 143
BbsI GAAGAC 1 cut(s) 236
BbvI GCAGC 4 cut(s) 69, 72, 148, 224
BceAI ACGGC 2 cut(s) 75, 248
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciT130I CCWGG 1 cut(s) 217
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 162
BfoI RGCGCY 3 cut(s) 36, 141, 147
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 6 cut(s) 36, 58, 61, 162, 183, 213
BlsI GCNGC 6 cut(s) 37, 59, 62, 163, 184, 214
Bme1390I CCNGG 1 cut(s) 217
BmgBI CACGTC 1 cut(s) 248
BmiI GGNNCC 4 cut(s) 28, 34, 139, 145
BmrFI CCNGG 1 cut(s) 217
BmrI ACTGGG 1 cut(s) 143
BmuI ACTGGG 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 236
BsaHI GRCGYC 3 cut(s) 33, 138, 144
BsaJI CCNNGG 2 cut(s) 186, 216
BsaWI WCCGGW 1 cut(s) 267
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 149, 204
BseAI TCCGGA 1 cut(s) 267
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 2 cut(s) 186, 216
BseGI GGATG 1 cut(s) 252
BseNI ACTGG 2 cut(s) 149, 204
BseX3I CGGCCG 1 cut(s) 88
BseXI GCAGC 4 cut(s) 69, 72, 148, 224
Bsh1236I CGCG 1 cut(s) 132
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 5 cut(s) 5, 72, 90, 203, 263
BshNI GGYRCC 3 cut(s) 32, 137, 143
BsiEI CGRYCG 1 cut(s) 91
BsiSI CCGG 6 cut(s) 6, 30, 114, 141, 204, 268
BslFI GGGAC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 233
BsnI GGCC 5 cut(s) 5, 72, 90, 203, 263
Bsp13I TCCGGA 1 cut(s) 267
BspACI CCGC 2 cut(s) 36, 183
BspANI GGCC 5 cut(s) 5, 72, 90, 203, 263
BspEI TCCGGA 1 cut(s) 267
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 4 cut(s) 28, 34, 139, 145
BspMAI CTGCAG 1 cut(s) 166
BspT107I GGYRCC 3 cut(s) 32, 137, 143
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 2 cut(s) 149, 204
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 186, 216
BssNI GRCGYC 3 cut(s) 33, 138, 144
Bst2UI CCWGG 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 4
BstACI GRCGYC 3 cut(s) 33, 138, 144
BstC8I GCNNGC 3 cut(s) 70, 100, 142
BstF5I GGATG 1 cut(s) 252
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 3 cut(s) 36, 141, 147
BstHHI GCGC 4 cut(s) 35, 132, 140, 146
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 3 cut(s) 44, 69, 209
BstNI CCWGG 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 215
BstSFI CTRYAG 1 cut(s) 162
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 4 cut(s) 69, 72, 148, 224
BstV2I GAAGAC 1 cut(s) 236
BstZI CGGCCG 1 cut(s) 88
BsuRI GGCC 5 cut(s) 5, 72, 90, 203, 263
BtrI CACGTC 1 cut(s) 248
BtsCI GGATG 1 cut(s) 252
Cac8I GCNNGC 3 cut(s) 70, 100, 142
CfoI GCGC 4 cut(s) 35, 132, 140, 146
Cfr10I RCCGGY 1 cut(s) 140
CseI GACGC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 121
CviJI RGCY 8 cut(s) 5, 27, 68, 72, 90, 203, 215, 263
CviKI_1 RGCY 8 cut(s) 5, 27, 68, 72, 90, 203, 215, 263
CviQI GTAC 1 cut(s) 121
DinI GGCGCC 3 cut(s) 34, 139, 145
EaeI YGGCCR 4 cut(s) 3, 88, 201, 261
EagI CGGCCG 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 4
EarI CTCTTC 1 cut(s) 4
EclXI CGGCCG 1 cut(s) 88
Eco52I CGGCCG 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 215
EgeI GGCGCC 3 cut(s) 34, 139, 145
EheI GGCGCC 3 cut(s) 34, 139, 145
FaqI GGGAC 1 cut(s) 233
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 6 cut(s) 36, 58, 61, 162, 183, 213
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 6 cut(s) 36, 58, 61, 162, 183, 213
FspBI CTAG 1 cut(s) 170
GlaI GCGC 4 cut(s) 34, 131, 139, 145
GluI GCNGC 6 cut(s) 36, 58, 61, 162, 183, 213
HaeII RGCGCY 3 cut(s) 36, 141, 147
HaeIII GGCC 5 cut(s) 5, 72, 90, 203, 263
HapII CCGG 6 cut(s) 6, 30, 114, 141, 204, 268
HgaI GACGC 1 cut(s) 121
HhaI GCGC 4 cut(s) 35, 132, 140, 146
Hin1I GRCGYC 3 cut(s) 33, 138, 144
Hin6I GCGC 4 cut(s) 33, 130, 138, 144
HinP1I GCGC 4 cut(s) 33, 130, 138, 144
HinfI GANTC 1 cut(s) 232
HpaII CCGG 6 cut(s) 6, 30, 114, 141, 204, 268
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 2 cut(s) 194, 268
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 2 cut(s) 89, 137
HpyAV CCTTC 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 2 cut(s) 164, 212
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 69, 209
HpySE526I ACGT 1 cut(s) 247
Hsp92I GRCGYC 3 cut(s) 33, 138, 144
HspAI GCGC 4 cut(s) 33, 130, 138, 144
KasI GGCGCC 3 cut(s) 32, 137, 143
Kpn2I TCCGGA 1 cut(s) 267
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
LmnI GCTCC 1 cut(s) 32
Lsp1109I GCAGC 4 cut(s) 69, 72, 148, 224
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 247
MaeIII GTNAC 1 cut(s) 248
MboII GAAGA 2 cut(s) 21, 241
MfeI CAATTG 1 cut(s) 257
MluCI AATT 2 cut(s) 77, 257
Mly113I GGCGCC 3 cut(s) 33, 138, 144
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 7 cut(s) 5, 61, 83, 116, 167, 181, 188
MreI CGCCGGCG 1 cut(s) 140
MroI TCCGGA 1 cut(s) 267
MroNI GCCGGC 1 cut(s) 140
MspI CCGG 6 cut(s) 6, 30, 114, 141, 204, 268
MspR9I CCNGG 1 cut(s) 217
MunI CAATTG 1 cut(s) 257
MvaI CCWGG 1 cut(s) 217
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 44, 69, 209
NaeI GCCGGC 1 cut(s) 142
NarI GGCGCC 3 cut(s) 33, 138, 144
NgoMIV GCCGGC 1 cut(s) 140
NlaIV GGNNCC 4 cut(s) 28, 34, 139, 145
NmeAIII GCCGAG 2 cut(s) 151, 211
NmuCI GTSAC 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdiI GCCGGC 1 cut(s) 142
PkrI GCNGC 6 cut(s) 37, 59, 62, 163, 184, 214
PleI GAGTC 1 cut(s) 226
PluTI GGCGCC 3 cut(s) 36, 141, 147
PpsI GAGTC 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 4 cut(s) 28, 34, 139, 145
PstI CTGCAG 1 cut(s) 166
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SatI GCNGC 6 cut(s) 36, 58, 61, 162, 183, 213
SchI GAGTC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 217
SetI ASST 6 cut(s) 53, 70, 159, 180, 192, 250
SfcI CTRYAG 1 cut(s) 162
SfoI GGCGCC 3 cut(s) 34, 139, 145
SgrAI CRCCGGYG 1 cut(s) 140
Sse9I AATT 2 cut(s) 77, 257
SsiI CCGC 2 cut(s) 36, 183
SspDI GGCGCC 3 cut(s) 32, 137, 143
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 215
TaiI ACGT 1 cut(s) 250
TasI AATT 2 cut(s) 77, 257
TauI GCSGC 2 cut(s) 38, 185
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 4 cut(s) 57, 60, 161, 212
Tsp45I GTSAC 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.