AT1G55960
ERF Family

Polyketide cyclase dehydrase and lipid transport superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002322
Physical Location & Seq
Reverse (-)
20927643 .. 20930209
2567 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55960.1

Sequence Viewer

Length: 1212 bp
ATGAAGAGCGTATCAACCTGGGCTTTGTCTTTCTTCTCCGACGAACTTTCTCGGCGAGCTGTTTCCGATTGTTATTTATGGACCACCGCGATTTCGCTTCTCTTAATCCTTCTCCTTCATATCTTCTTTTCCACTAAATTTCGCTTCTTCACTTCTGCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTCCCTCTACAGAATCAGTTCCCGCGAACTCTCAATCAAGGATATCCAAACTAGTCTCTGATGAAGATTTGAAATTTCTGATCGAGAATTTGGAGGAGGAAACAAATGATTCCACGGAGATATGGGAACATGTTATTCACAAAAGCAACGATCGCATTTCATACTCTGCTAAACGCTGCAAACCCAAAGATGGCGGTGGTCCTATGAAGTACCTAAGTGTCACGGTCTTCGAGGGTTTCTCTGCAGAGATTGTGAGGGACTTTTACATGGACAATGATTATAGGAAACTATGGGATAAGACTGTGGTTGAGCATGAGCAGTTGCAGGTTGATAGTAATACTGGAATTGAGATTGGTCGCACCATTAAAAAGTTTCCCTTGTTGACATCGAGAGAGTACGTTCTAGCTTGGAGATTGTGGCAAGGAAAGGAGAAGAAGTTCTACTGTTTCACAAAGGAATGTGATCACAATATGGTACCACAACAGAGGAAGTATGTACGTGTAAGTTACTTTAGATCTGGTTGGCGAATCAGGCAAGTTCCCGGTAGAAATGCGTGTGAGATCAAAATGTTTCACCAGGAGAATGCTGGGTTAAATGTTGAGATGGCCAAGCTCGCCTTCTCAAAAGGCATATGGAGTTACGTTTGTAAGATGGAAAACGCTCTTTGTAAATACATAGCAACCAGTCATAGAACCCAAGGACCCATTCTATCTGCTGTCACCTTAATGAAAGAGGTTCCATCAGAGTTAGAAACTGGGACAGATAATGTCACAGGCTCCATGGAAACAAGTAGTGGTGAAGGAGTGTTGAGTCATGTTGTAGCCGCCAAACAGAAGAAAAAAATGAGAAAGCCATCAACGAAACTGATAGCAAAAGGTCTAGTACTTGTGGGCGGTGCGATCTGCTTGTCCCGTGGTCCCTCAGCCTTAGGTGCTAAAGTCGCATTGGCTTACCTCTTGACGAAGCTGAACAAACGTGGAACTTCTCTGAATCAGACCACCCAGACCACCACCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
START

Protein Analysis

403

Amino Acids

45.32

Weight (kDa)

9.35

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
START PF01852 102 - 254 2.6e-07 START domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 508
Acc65I GGTACC 1 cut(s) 667
AccB1I GGYRCC 1 cut(s) 667
AccII CGCG 2 cut(s) 89, 218
AciI CCGC 5 cut(s) 87, 216, 387, 1017, 1086
AcoI YGGCCR 1 cut(s) 798
AcsI RAATTY 3 cut(s) 137, 266, 280
AfaI GTAC 5 cut(s) 404, 590, 669, 690, 1077
AfiI CCNNNNNNNGG 1 cut(s) 383
AflIII ACRYGT 2 cut(s) 322, 691
AgsI TTSAA 1 cut(s) 265
AhlI ACTAGT 1 cut(s) 244
AjnI CCWGG 2 cut(s) 17, 768
AjuI GAANNNNNNNTTGG 4 cut(s) 794, 826, 882, 914
AloI GAACNNNNNNTCC 2 cut(s) 614, 646
AluBI AGCT 4 cut(s) 59, 599, 805, 1159
AluI AGCT 4 cut(s) 59, 599, 805, 1159
Alw26I GTCTC 1 cut(s) 253
AoxI GGCC 1 cut(s) 798
ApeKI GCWGC 1 cut(s) 369
ApoI RAATTY 3 cut(s) 137, 266, 280
Asp700I GAANNNNTTC 2 cut(s) 210, 629
Asp718I GGTACC 1 cut(s) 667
AspS9I GGNCC 4 cut(s) 81, 392, 893, 1109
AsuC2I CCSGG 1 cut(s) 735
AsuHPI GGTGA 3 cut(s) 758, 904, 1001
AvaII GGWCC 4 cut(s) 81, 392, 893, 1109
AxyI CCTNAGG 1 cut(s) 1120
BalI TGGCCA 1 cut(s) 800
BanI GGYRCC 1 cut(s) 667
BarI GAAGNNNNNNTAC 2 cut(s) 617, 649
BbsI GAAGAC 1 cut(s) 412
BbvCI CCTCAGC 1 cut(s) 1114
BbvI GCAGC 1 cut(s) 356
BccI CCATC 5 cut(s) 377, 790, 838, 940, 1054
BciT130I CCWGG 2 cut(s) 19, 770
BclI TGATCA 1 cut(s) 655
BcnI CCSGG 1 cut(s) 735
BcoDI GTCTC 1 cut(s) 253
BcuI ACTAGT 1 cut(s) 244
BfaI CTAG 3 cut(s) 245, 596, 1073
BfmI CTRYAG 2 cut(s) 201, 435
BfuAI ACCTGC 1 cut(s) 508
BglII AGATCT 1 cut(s) 707
BisI GCNGC 2 cut(s) 370, 1017
BlsI GCNGC 2 cut(s) 371, 1018
BmcAI AGTACT 1 cut(s) 1077
Bme1390I CCNGG 3 cut(s) 19, 735, 770
Bme18I GGWCC 4 cut(s) 81, 392, 893, 1109
BmgT120I GGNCC 4 cut(s) 81, 392, 893, 1109
BmiI GGNNCC 5 cut(s) 669, 895, 930, 970, 1111
BmrFI CCNGG 3 cut(s) 19, 735, 770
BmrI ACTGGG 1 cut(s) 957
BmuI ACTGGG 1 cut(s) 957
BpiI GAAGAC 1 cut(s) 412
BplI GAGNNNNNCTC 2 cut(s) 416, 448
Bpu10I CCTNAGC 1 cut(s) 1114
BpuMI CCSGG 1 cut(s) 735
BsaAI YACGTR 1 cut(s) 692
BsaJI CCNNGG 5 cut(s) 18, 306, 889, 972, 1105
BsaXI ACNNNNNCTCC 4 cut(s) 142, 172, 614, 644
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse1I ACTGG 3 cut(s) 538, 876, 952
Bse21I CCTNAGG 1 cut(s) 1120
BseBI CCWGG 2 cut(s) 19, 770
BseDI CCNNGG 5 cut(s) 18, 306, 889, 972, 1105
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMII CTCAG 1 cut(s) 1128
BseNI ACTGG 3 cut(s) 538, 876, 952
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 356
BseYI CCCAGC 1 cut(s) 779
Bsh1236I CGCG 2 cut(s) 89, 218
Bsh1285I CGRYCG 1 cut(s) 346
BshFI GGCC 1 cut(s) 800
BshNI GGYRCC 1 cut(s) 667
BsiEI CGRYCG 1 cut(s) 346
BsiSI CCGG 1 cut(s) 735
BslFI GGGAC 4 cut(s) 464, 964, 1087, 1095
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 1 cut(s) 253
BsmFI GGGAC 4 cut(s) 464, 964, 1087, 1095
BsmI GAATGC 1 cut(s) 781
BsnI GGCC 1 cut(s) 800
Bsp143I GATC 6 cut(s) 273, 343, 655, 707, 753, 1092
Bsp19I CCATGG 1 cut(s) 972
BspACI CCGC 5 cut(s) 87, 216, 387, 1017, 1086
BspANI GGCC 1 cut(s) 800
BspCNI CTCAG 1 cut(s) 1127
BspFNI CGCG 2 cut(s) 89, 218
BspLI GGNNCC 5 cut(s) 669, 895, 930, 970, 1111
BspMAI CTGCAG 1 cut(s) 439
BspMI ACCTGC 1 cut(s) 508
BspT107I GGYRCC 1 cut(s) 667
BsrI ACTGG 3 cut(s) 538, 876, 952
BssECI CCNNGG 5 cut(s) 18, 306, 889, 972, 1105
BssMI GATC 6 cut(s) 273, 343, 655, 707, 753, 1092
BssT1I CCWWGG 2 cut(s) 889, 972
Bst2UI CCWGG 2 cut(s) 19, 770
Bst4CI ACNGT 3 cut(s) 418, 496, 638
BstBAI YACGTR 1 cut(s) 692
BstC8I GCNNGC 2 cut(s) 57, 807
BstDEI CTNAG 3 cut(s) 407, 1114, 1120
BstDSI CCRYGG 3 cut(s) 306, 972, 1105
BstFNI CGCG 2 cut(s) 89, 218
BstKTI GATC 6 cut(s) 276, 346, 658, 710, 756, 1095
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 6 cut(s) 273, 343, 655, 707, 753, 1092
BstMCI CGRYCG 1 cut(s) 346
BstMWI GCNNNNNNNGC 5 cut(s) 345, 724, 806, 1124, 1133
BstNI CCWGG 2 cut(s) 19, 770
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 3 cut(s) 17, 733, 768
BstSFI CTRYAG 2 cut(s) 201, 435
BstUI CGCG 2 cut(s) 89, 218
BstV1I GCAGC 1 cut(s) 356
BstV2I GAAGAC 1 cut(s) 412
BstX2I RGATCY 1 cut(s) 707
BstYI RGATCY 1 cut(s) 707
Bsu36I CCTNAGG 1 cut(s) 1120
BsuRI GGCC 1 cut(s) 800
BtgI CCRYGG 3 cut(s) 306, 972, 1105
BveI ACCTGC 1 cut(s) 508
Cac8I GCNNGC 2 cut(s) 57, 807
Cfr13I GGNCC 4 cut(s) 81, 392, 893, 1109
Csp6I GTAC 5 cut(s) 403, 589, 668, 689, 1076
CviAII CATG 5 cut(s) 323, 460, 506, 973, 1007
CviQI GTAC 5 cut(s) 403, 589, 668, 689, 1076
DdeI CTNAG 3 cut(s) 407, 1114, 1120
DpnI GATC 6 cut(s) 275, 345, 657, 709, 755, 1094
DpnII GATC 6 cut(s) 273, 343, 655, 707, 753, 1092
EaeI YGGCCR 1 cut(s) 798
Eco130I CCWWGG 2 cut(s) 889, 972
Eco32I GATATC 1 cut(s) 237
Eco47I GGWCC 4 cut(s) 81, 392, 893, 1109
Eco81I CCTNAGG 1 cut(s) 1120
EcoO109I RGGNCCY 1 cut(s) 893
EcoRII CCWGG 2 cut(s) 17, 768
EcoRV GATATC 1 cut(s) 237
EcoT14I CCWWGG 2 cut(s) 889, 972
ErhI CCWWGG 2 cut(s) 889, 972
FaeI CATG 5 cut(s) 326, 463, 509, 976, 1010
FalI AAGNNNNNCTT 4 cut(s) 554, 586, 794, 826
FaqI GGGAC 4 cut(s) 464, 964, 1087, 1095
FatI CATG 5 cut(s) 322, 459, 505, 972, 1006
FauI CCCGC 1 cut(s) 223
FauNDI CATATG 1 cut(s) 824
FbaI TGATCA 1 cut(s) 655
Fnu4HI GCNGC 2 cut(s) 370, 1017
Fsp4HI GCNGC 2 cut(s) 370, 1017
FspBI CTAG 3 cut(s) 245, 596, 1073
GluI GCNGC 2 cut(s) 370, 1017
GsaI CCCAGC 1 cut(s) 783
HaeIII GGCC 1 cut(s) 800
HapII CCGG 1 cut(s) 735
Hin1II CATG 5 cut(s) 326, 463, 509, 976, 1010
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HinfI GANTC 5 cut(s) 206, 302, 720, 1003, 1183
HpaII CCGG 1 cut(s) 735
HphI GGTGA 3 cut(s) 758, 904, 1001
Hpy166II GTNNAC 1 cut(s) 576
Hpy188I TCNGA 7 cut(s) 40, 67, 253, 273, 937, 1182, 1188
Hpy188III TCNNGA 3 cut(s) 277, 582, 1150
Hpy8I GTNNAC 1 cut(s) 576
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 5 cut(s) 119, 125, 171, 820, 986
HpyCH4III ACNGT 3 cut(s) 418, 496, 638
HpyCH4IV ACGT 4 cut(s) 591, 691, 834, 1168
HpyCH4V TGCA 3 cut(s) 372, 437, 517
HpyF10VI GCNNNNNNNGC 5 cut(s) 345, 724, 806, 1124, 1133
HpyF3I CTNAG 3 cut(s) 407, 1114, 1120
HpySE526I ACGT 4 cut(s) 591, 691, 834, 1168
Hsp92II CATG 5 cut(s) 326, 463, 509, 976, 1010
KpnI GGTACC 1 cut(s) 671
Ksp22I TGATCA 1 cut(s) 655
Kzo9I GATC 6 cut(s) 273, 343, 655, 707, 753, 1092
LmnI GCTCC 2 cut(s) 163, 974
Lsp1109I GCAGC 1 cut(s) 356
MaeI CTAG 3 cut(s) 245, 596, 1073
MaeII ACGT 4 cut(s) 591, 691, 834, 1168
MaeIII GTNAC 5 cut(s) 412, 698, 830, 910, 961
MalI GATC 6 cut(s) 275, 345, 657, 709, 755, 1094
MboI GATC 6 cut(s) 273, 343, 655, 707, 753, 1092
MflI RGATCY 1 cut(s) 707
MlsI TGGCCA 1 cut(s) 800
MluCI AATT 4 cut(s) 137, 266, 280, 537
MluNI TGGCCA 1 cut(s) 800
MlyI GAGTC 1 cut(s) 1012
MmeI TCCRAC 1 cut(s) 63
Mox20I TGGCCA 1 cut(s) 800
MroXI GAANNNNTTC 2 cut(s) 210, 629
MscI TGGCCA 1 cut(s) 800
MseI TTAA 5 cut(s) 104, 558, 785, 917, 1210
MslI CAYNNNNRTG 1 cut(s) 917
Msp20I TGGCCA 1 cut(s) 800
MspI CCGG 1 cut(s) 735
MspR9I CCNGG 3 cut(s) 19, 735, 770
Mva1269I GAATGC 1 cut(s) 781
MvaI CCWGG 2 cut(s) 19, 770
MvnI CGCG 2 cut(s) 89, 218
MwoI GCNNNNNNNGC 5 cut(s) 345, 724, 806, 1124, 1133
NciI CCSGG 1 cut(s) 735
NcoI CCATGG 1 cut(s) 972
NdeI CATATG 1 cut(s) 824
NdeII GATC 6 cut(s) 273, 343, 655, 707, 753, 1092
NlaIII CATG 5 cut(s) 326, 463, 509, 976, 1010
NlaIV GGNNCC 5 cut(s) 669, 895, 930, 970, 1111
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 3 cut(s) 412, 910, 961
NspI RCATGY 1 cut(s) 326
PciI ACATGT 1 cut(s) 322
PctI GAATGC 1 cut(s) 781
PdmI GAANNNNTTC 2 cut(s) 210, 629
PfeI GAWTC 4 cut(s) 206, 302, 720, 1183
PkrI GCNGC 2 cut(s) 371, 1018
Ple19I CGATCG 1 cut(s) 346
PleI GAGTC 1 cut(s) 1011
PpsI GAGTC 1 cut(s) 1011
Ppu21I YACGTR 1 cut(s) 692
PpuMI RGGWCCY 1 cut(s) 893
PscI ACATGT 1 cut(s) 322
Psp5II RGGWCCY 1 cut(s) 893
Psp6I CCWGG 2 cut(s) 17, 768
PspFI CCCAGC 1 cut(s) 779
PspGI CCWGG 2 cut(s) 17, 768
PspN4I GGNNCC 5 cut(s) 669, 895, 930, 970, 1111
PspPI GGNCC 4 cut(s) 81, 392, 893, 1109
PspPPI RGGWCCY 1 cut(s) 893
PstI CTGCAG 1 cut(s) 439
PsuI RGATCY 1 cut(s) 707
PvuI CGATCG 1 cut(s) 346
RsaI GTAC 5 cut(s) 404, 590, 669, 690, 1077
RsaNI GTAC 5 cut(s) 403, 589, 668, 689, 1076
RseI CAYNNNNRTG 1 cut(s) 917
SaqAI TTAA 5 cut(s) 104, 558, 785, 917, 1210
SatI GCNGC 2 cut(s) 370, 1017
Sau3AI GATC 6 cut(s) 273, 343, 655, 707, 753, 1092
Sau96I GGNCC 4 cut(s) 81, 392, 893, 1109
ScaI AGTACT 1 cut(s) 1077
SchI GAGTC 1 cut(s) 1012
ScrFI CCNGG 3 cut(s) 19, 735, 770
SfcI CTRYAG 2 cut(s) 201, 435
SinI GGWCC 4 cut(s) 81, 392, 893, 1109
SmiMI CAYNNNNRTG 1 cut(s) 917
SpeI ACTAGT 1 cut(s) 244
Sse9I AATT 4 cut(s) 137, 266, 280, 537
SsiI CCGC 5 cut(s) 87, 216, 387, 1017, 1086
SspMI CTAG 3 cut(s) 245, 596, 1073
StyD4I CCNGG 3 cut(s) 17, 733, 768
StyI CCWWGG 2 cut(s) 889, 972
TaaI ACNGT 3 cut(s) 418, 496, 638
TaiI ACGT 4 cut(s) 594, 694, 837, 1171
TaqI TCGA 3 cut(s) 276, 423, 581
TasI AATT 4 cut(s) 137, 266, 280, 537
TatI WGTACW 1 cut(s) 1075
TauI GCSGC 1 cut(s) 1019
TfiI GAWTC 4 cut(s) 206, 302, 720, 1183
Tru1I TTAA 5 cut(s) 104, 558, 785, 917, 1210
Tru9I TTAA 5 cut(s) 104, 558, 785, 917, 1210
TseFI GTSAC 3 cut(s) 412, 910, 961
TseI GCWGC 1 cut(s) 369
Tsp45I GTSAC 3 cut(s) 412, 910, 961
TspDTI ATGAA 6 cut(s) 17, 107, 270, 342, 413, 935
TspGWI ACGGA 1 cut(s) 323
VpaK11BI GGWCC 4 cut(s) 81, 392, 893, 1109
XapI RAATTY 3 cut(s) 137, 266, 280
XceI RCATGY 1 cut(s) 326
XcmI CCANNNNNNNNNTGG 1 cut(s) 776
XmnI GAANNNNTTC 2 cut(s) 210, 629
XspI CTAG 3 cut(s) 245, 596, 1073
ZrmI AGTACT 1 cut(s) 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.