RchiOBHm_Chr2g0148611

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002322
Physical Location & Seq
Forward (+)
66373240 .. 66377080
3841 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51817

Sequence Viewer

Length: 1197 bp
ATGGTGAACATGGTGGACTTGGGCCGATTCCACGCCCTGTTTCAAGGCTCGTCGGAGGAGTTTTGGCGGGAAAACGTTTATGGGGGATGGGCTACTCTTGTGGCTGTGCTTATTATCTTGGCTTGGCACTGTTTCAAGGGTTTTTTGTATAAGAAAACGTCTTCTTCCTCTGCTTCTTCATCTACAGTTGGTGTCTCTGATTCAAATCCCAGTGCTTCTGGCTCTGGGGTTCACAGACTAGTCTCGGAAATGGTAACAGATGCAGATTTGAAGTTTCTGATTGAAAAATTGGACGAGAAGATCGGTCAGAATAAGAAATGGGACAATGTCATAGAGAAAGGAAATGATCTTCTATACTACAGTGCTAAGTGCTGCAAGCCTAAGGTTGGTCCTGTGAAATACTTGAGTGTGACAATATTTGAGGACTGCTCTCCTGAGATGCTGAGAGACTTCTACATGGATAATGATTACAGGAAGCAATGGGATAAAATGCTGATTGAGCATGAACAGTTACATGTGGACAAAAACAATGGGGTTGAAGTTGGCCGGACAATAAAGAAGTTTCCACTGTTGACACCTAGAGAATATGTATTAGCTTGGAGATTGTGGGAAGGAAAAGATAAAACATTCTACTGTTTTGTCAAGGAATGTGAACATTCTTTGGCACCGCGGCAGAAGAAGTATGTGCGTGTTGGTACTTTCAGATCTGGTTGGCGAATCAGAAAAGTGCCTGGTAGAAATGCCTGCGAGATCAAAATGTATCACCAAGAAGATGCTGGTTTGAACGTGGAGATGGCAAAACTGGCCTTCGCAAAGGGCATATGGAGTTACGTATGTAAGATGGATAGTGCACTACGCAAATATTCTACAATCAGCAATGATCAATCAAGTTCTGCTGCCACTGCAGTCACTTTGATAAAAAAGTTAAGCCCCCCTGGATTAGAGGCCACGGATAACAATGGAGCAACCTCTGCAGAACCTATTATTCACAGACCAATTACTGGTGGGGAGAGGAAATTGTCAAGAAGACCATCAAAGAAATTGCTAGCCAATGGCTTGCTGCTTGTCGGTGGTCTGGTCTGCCTATCTCGTGGTCGCTCTAGCCTGGGTGCAAAGGTTGCCATGGCATATATCTTGACCAAACTGAACAAGCGTGGTGCTTCATCAAGTCAAAATGGGGATATTGCAGGCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

398

Amino Acids

44.49

Weight (kDa)

9.41

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
START PF01852 137 - 258 6.6e-10 START domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 664
AccB7I CCANNNNNTGG 1 cut(s) 1001
AccII CGCG 1 cut(s) 670
AciI CCGC 3 cut(s) 67, 668, 670
AclI AACGTT 1 cut(s) 75
AcoI YGGCCR 1 cut(s) 544
AfaI GTAC 1 cut(s) 697
AfiI CCNNNNNNNGG 2 cut(s) 386, 1001
AflIII ACRYGT 1 cut(s) 514
AgsI TTSAA 7 cut(s) 44, 136, 204, 271, 284, 539, 784
AhlI ACTAGT 1 cut(s) 238
AjnI CCWGG 3 cut(s) 730, 934, 1104
AluBI AGCT 1 cut(s) 596
AluI AGCT 1 cut(s) 596
Alw21I GWGCWC 1 cut(s) 853
Alw26I GTCTC 3 cut(s) 199, 247, 441
Alw44I GTGCAC 1 cut(s) 849
AoxI GGCC 4 cut(s) 22, 544, 804, 945
ApaLI GTGCAC 1 cut(s) 849
ApeKI GCWGC 3 cut(s) 372, 896, 1060
AspS9I GGNCC 2 cut(s) 22, 389
AsuHPI GGTGA 2 cut(s) 16, 755
AsuNHI GCTAGC 1 cut(s) 1045
AvaII GGWCC 1 cut(s) 389
AxyI CCTNAGG 1 cut(s) 381
BaeGI GKGCMC 1 cut(s) 853
BanI GGYRCC 1 cut(s) 664
BauI CACGAG 1 cut(s) 1089
BbsI GAAGAC 2 cut(s) 153, 1033
Bbv12I GWGCWC 1 cut(s) 853
BbvI GCAGC 3 cut(s) 359, 883, 1047
BccI CCATC 4 cut(s) 81, 787, 835, 1039
BciT130I CCWGG 3 cut(s) 732, 936, 1106
BclI TGATCA 1 cut(s) 880
BcoDI GTCTC 3 cut(s) 199, 247, 441
BcuI ACTAGT 1 cut(s) 238
BfaI CTAG 4 cut(s) 239, 579, 1046, 1101
BfmI CTRYAG 4 cut(s) 183, 358, 903, 972
BglII AGATCT 1 cut(s) 704
BisI GCNGC 4 cut(s) 373, 671, 897, 1061
BlsI GCNGC 4 cut(s) 374, 672, 898, 1062
Bme1390I CCNGG 3 cut(s) 732, 936, 1106
Bme18I GGWCC 1 cut(s) 389
BmgT120I GGNCC 2 cut(s) 22, 389
BmiI GGNNCC 1 cut(s) 666
BmrFI CCNGG 3 cut(s) 732, 936, 1106
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 3 cut(s) 250, 429, 763
BmtI GCTAGC 1 cut(s) 1049
BmuI ACTGGG 1 cut(s) 204
BpiI GAAGAC 2 cut(s) 153, 1033
BplI GAGNNNNNCTC 2 cut(s) 413, 445
BpuEI CTTGAG 1 cut(s) 424
BsaAI YACGTR 1 cut(s) 832
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 5 cut(s) 668, 934, 948, 1105, 1122
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 1001
Bse1I ACTGG 3 cut(s) 210, 807, 1006
Bse21I CCTNAGG 1 cut(s) 381
Bse3DI GCAATG 2 cut(s) 485, 883
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 3 cut(s) 732, 936, 1106
BseDI CCNNGG 5 cut(s) 668, 934, 948, 1105, 1122
BseGI GGATG 1 cut(s) 92
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 2 cut(s) 386, 1001
BseMI GCAATG 2 cut(s) 485, 883
BseMII CTCAG 2 cut(s) 426, 434
BseNI ACTGG 3 cut(s) 210, 807, 1006
BseRI GAGGAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 853
BseXI GCAGC 3 cut(s) 359, 883, 1047
Bsh1236I CGCG 1 cut(s) 670
BshFI GGCC 4 cut(s) 24, 546, 806, 947
BshNI GGYRCC 1 cut(s) 664
BsiHKAI GWGCWC 1 cut(s) 853
BsiSI CCGG 1 cut(s) 547
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 2 cut(s) 386, 1001
BsmAI GTCTC 3 cut(s) 199, 247, 441
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 4 cut(s) 24, 546, 806, 947
Bsp1286I GDGCHC 1 cut(s) 853
Bsp143I GATC 5 cut(s) 300, 346, 704, 750, 880
Bsp19I CCATGG 1 cut(s) 1122
BspACI CCGC 3 cut(s) 67, 668, 670
BspANI GGCC 4 cut(s) 24, 546, 806, 947
BspCNI CTCAG 2 cut(s) 427, 435
BspFNI CGCG 1 cut(s) 670
BspLI GGNNCC 1 cut(s) 666
BspMAI CTGCAG 2 cut(s) 907, 976
BspOI GCTAGC 1 cut(s) 1049
BspT107I GGYRCC 1 cut(s) 664
BsrDI GCAATG 2 cut(s) 485, 883
BsrI ACTGG 3 cut(s) 210, 807, 1006
BssECI CCNNGG 5 cut(s) 668, 934, 948, 1105, 1122
BssMI GATC 5 cut(s) 300, 346, 704, 750, 880
BssSI CACGAG 1 cut(s) 1089
BssT1I CCWWGG 1 cut(s) 1122
Bst2BI CACGAG 1 cut(s) 1089
Bst2UI CCWGG 3 cut(s) 732, 936, 1106
Bst4CI ACNGT 6 cut(s) 131, 187, 362, 510, 570, 635
BstAPI GCANNNNNTGC 2 cut(s) 971, 1118
BstBAI YACGTR 1 cut(s) 832
BstC8I GCNNGC 5 cut(s) 377, 745, 1047, 1058, 1189
BstDEI CTNAG 4 cut(s) 366, 381, 435, 443
BstDSI CCRYGG 3 cut(s) 668, 948, 1122
BstF5I GGATG 1 cut(s) 92
BstFNI CGCG 1 cut(s) 670
BstKTI GATC 5 cut(s) 303, 349, 707, 753, 883
BstMAI GTCTC 3 cut(s) 199, 247, 441
BstMBI GATC 5 cut(s) 300, 346, 704, 750, 880
BstMWI GCNNNNNNNGC 5 cut(s) 499, 803, 902, 971, 1118
BstNI CCWGG 3 cut(s) 732, 936, 1106
BstNSI RCATGY 1 cut(s) 518
BstSCI CCNGG 3 cut(s) 730, 934, 1104
BstSFI CTRYAG 4 cut(s) 183, 358, 903, 972
BstSLI GKGCMC 1 cut(s) 853
BstSNI TACGTA 1 cut(s) 832
BstUI CGCG 1 cut(s) 670
BstV1I GCAGC 3 cut(s) 359, 883, 1047
BstV2I GAAGAC 2 cut(s) 153, 1033
BstX2I RGATCY 1 cut(s) 704
BstYI RGATCY 1 cut(s) 704
Bsu36I CCTNAGG 1 cut(s) 381
BsuRI GGCC 4 cut(s) 24, 546, 806, 947
BtgI CCRYGG 3 cut(s) 668, 948, 1122
BtsCI GGATG 1 cut(s) 92
BtsI GCAGTG 1 cut(s) 900
BtsIMutI CAGTG 5 cut(s) 127, 217, 367, 566, 900
Cac8I GCNNGC 5 cut(s) 377, 745, 1047, 1058, 1189
Cfr13I GGNCC 2 cut(s) 22, 389
Cfr42I CCGCGG 1 cut(s) 671
Csp6I GTAC 1 cut(s) 696
CviAII CATG 5 cut(s) 10, 457, 503, 515, 1123
CviQI GTAC 1 cut(s) 696
DdeI CTNAG 4 cut(s) 366, 381, 435, 443
DpnI GATC 5 cut(s) 302, 348, 706, 752, 882
DpnII GATC 5 cut(s) 300, 346, 704, 750, 880
EaeI YGGCCR 1 cut(s) 544
Eco105I TACGTA 1 cut(s) 832
Eco130I CCWWGG 1 cut(s) 1122
Eco47I GGWCC 1 cut(s) 389
Eco81I CCTNAGG 1 cut(s) 381
EcoRII CCWGG 3 cut(s) 730, 934, 1104
EcoT14I CCWWGG 1 cut(s) 1122
ErhI CCWWGG 1 cut(s) 1122
FaeI CATG 5 cut(s) 13, 460, 506, 518, 1126
FaqI GGGAC 1 cut(s) 335
FatI CATG 5 cut(s) 9, 456, 502, 514, 1122
FauI CCCGC 1 cut(s) 60
FauNDI CATATG 2 cut(s) 821, 1193
FbaI TGATCA 1 cut(s) 880
Fnu4HI GCNGC 4 cut(s) 373, 671, 897, 1061
FokI GGATG 1 cut(s) 99
Fsp4HI GCNGC 4 cut(s) 373, 671, 897, 1061
FspBI CTAG 4 cut(s) 239, 579, 1046, 1101
GluI GCNGC 4 cut(s) 373, 671, 897, 1061
HaeIII GGCC 4 cut(s) 24, 546, 806, 947
HapII CCGG 1 cut(s) 547
Hin1II CATG 5 cut(s) 13, 460, 506, 518, 1126
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HinfI GANTC 3 cut(s) 27, 200, 717
HpaII CCGG 1 cut(s) 547
HphI GGTGA 2 cut(s) 16, 755
Hpy166II GTNNAC 7 cut(s) 7, 16, 232, 520, 573, 653, 851
Hpy188I TCNGA 7 cut(s) 55, 199, 247, 279, 309, 704, 722
Hpy188III TCNNGA 3 cut(s) 434, 1023, 1135
Hpy8I GTNNAC 7 cut(s) 7, 16, 232, 520, 573, 653, 851
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 605, 817
HpyCH4III ACNGT 6 cut(s) 131, 187, 362, 510, 570, 635
HpyCH4IV ACGT 4 cut(s) 75, 158, 786, 831
HpyCH4V TGCA 7 cut(s) 263, 375, 851, 905, 974, 1112, 1187
HpyF10VI GCNNNNNNNGC 5 cut(s) 499, 803, 902, 971, 1118
HpyF3I CTNAG 4 cut(s) 366, 381, 435, 443
HpySE526I ACGT 4 cut(s) 75, 158, 786, 831
Hsp92II CATG 5 cut(s) 13, 460, 506, 518, 1126
Ksp22I TGATCA 1 cut(s) 880
KspI CCGCGG 1 cut(s) 671
Kzo9I GATC 5 cut(s) 300, 346, 704, 750, 880
LmnI GCTCC 1 cut(s) 962
Lsp1109I GCAGC 3 cut(s) 359, 883, 1047
LweI GCATC 3 cut(s) 250, 429, 763
MaeI CTAG 4 cut(s) 239, 579, 1046, 1101
MaeII ACGT 4 cut(s) 75, 158, 786, 831
MaeIII GTNAC 5 cut(s) 253, 409, 510, 827, 907
MalI GATC 5 cut(s) 302, 348, 706, 752, 882
MboI GATC 5 cut(s) 300, 346, 704, 750, 880
MboII GAAGA 8 cut(s) 153, 156, 168, 310, 341, 688, 782, 1038
MflI RGATCY 1 cut(s) 704
MhlI GDGCHC 1 cut(s) 853
MluCI AATT 4 cut(s) 287, 996, 1016, 1040
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 6 cut(s) 49, 178, 415, 937, 979, 1005
MseI TTAA 1 cut(s) 926
MspA1I CMGCKG 1 cut(s) 670
MspI CCGG 1 cut(s) 547
MspR9I CCNGG 3 cut(s) 732, 936, 1106
MvaI CCWGG 3 cut(s) 732, 936, 1106
MvnI CGCG 1 cut(s) 670
MwoI GCNNNNNNNGC 5 cut(s) 499, 803, 902, 971, 1118
NcoI CCATGG 1 cut(s) 1122
NdeI CATATG 2 cut(s) 821, 1193
NdeII GATC 5 cut(s) 300, 346, 704, 750, 880
NheI GCTAGC 1 cut(s) 1045
NlaIII CATG 5 cut(s) 13, 460, 506, 518, 1126
NlaIV GGNNCC 1 cut(s) 666
NmuCI GTSAC 2 cut(s) 409, 907
NspI RCATGY 1 cut(s) 518
PciI ACATGT 1 cut(s) 514
PfeI GAWTC 3 cut(s) 27, 200, 717
PflFI GACNNNGTC 1 cut(s) 326
PflMI CCANNNNNTGG 1 cut(s) 1001
PkrI GCNGC 4 cut(s) 374, 672, 898, 1062
Ppu21I YACGTR 1 cut(s) 832
PscI ACATGT 1 cut(s) 514
Psp1406I AACGTT 1 cut(s) 75
Psp6I CCWGG 3 cut(s) 730, 934, 1104
PspGI CCWGG 3 cut(s) 730, 934, 1104
PspN4I GGNNCC 1 cut(s) 666
PspPI GGNCC 2 cut(s) 22, 389
PstI CTGCAG 2 cut(s) 907, 976
PsuI RGATCY 1 cut(s) 704
PsyI GACNNNGTC 1 cut(s) 326
RsaI GTAC 1 cut(s) 697
RsaNI GTAC 1 cut(s) 696
SacII CCGCGG 1 cut(s) 671
SaqAI TTAA 1 cut(s) 926
SatI GCNGC 4 cut(s) 373, 671, 897, 1061
Sau3AI GATC 5 cut(s) 300, 346, 704, 750, 880
Sau96I GGNCC 2 cut(s) 22, 389
ScrFI CCNGG 3 cut(s) 732, 936, 1106
SduI GDGCHC 1 cut(s) 853
SfaNI GCATC 3 cut(s) 250, 429, 763
SfcI CTRYAG 4 cut(s) 183, 358, 903, 972
Sfr303I CCGCGG 1 cut(s) 671
SgrBI CCGCGG 1 cut(s) 671
SinI GGWCC 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 403
SmoI CTYRAG 1 cut(s) 403
SnaBI TACGTA 1 cut(s) 832
SpeI ACTAGT 1 cut(s) 238
Sse9I AATT 4 cut(s) 287, 996, 1016, 1040
SsiI CCGC 3 cut(s) 67, 668, 670
SspI AATATT 2 cut(s) 417, 863
SspMI CTAG 4 cut(s) 239, 579, 1046, 1101
StyD4I CCNGG 3 cut(s) 730, 934, 1104
StyI CCWWGG 1 cut(s) 1122
TaaI ACNGT 6 cut(s) 131, 187, 362, 510, 570, 635
TaiI ACGT 4 cut(s) 78, 161, 789, 834
TaqII GACCGA 1 cut(s) 293
TasI AATT 4 cut(s) 287, 996, 1016, 1040
TauI GCSGC 1 cut(s) 673
TfiI GAWTC 3 cut(s) 27, 200, 717
Tru1I TTAA 1 cut(s) 926
Tru9I TTAA 1 cut(s) 926
TscAI CASTG 5 cut(s) 134, 217, 367, 573, 907
TseFI GTSAC 2 cut(s) 409, 907
TseI GCWGC 3 cut(s) 372, 896, 1060
Tsp45I GTSAC 2 cut(s) 409, 907
TspDTI ATGAA 3 cut(s) 168, 519, 1152
TspGWI ACGGA 1 cut(s) 965
TspRI CASTG 5 cut(s) 134, 217, 367, 573, 907
Tth111I GACNNNGTC 1 cut(s) 326
Van91I CCANNNNNTGG 1 cut(s) 1001
VneI GTGCAC 1 cut(s) 849
VpaK11BI GGWCC 1 cut(s) 389
XceI RCATGY 1 cut(s) 518
XcmI CCANNNNNNNNNTGG 1 cut(s) 773
XspI CTAG 4 cut(s) 239, 579, 1046, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.