Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002322

Physical Location & Seq

Genomic Coordinates Reverse (-)

18788210 .. 18794023

Gene Structure 5814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG089800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCCAAGATTGGGGATTTCGGGCTTGCGAGTTGGTGTCTCTGATTCAAATCCCATTGCTTCTGGATCTGGGGGTTCACAGTTTAGAGTCTCGGAAATGGTAACAGATGCAGATTTGAAGTTTCTGATTGAAAATTTGGACGAGAAGATCGGTCAGAATAAGAAATGGGACAATGTCATAGAGAAAGGAAATGATCTTCTATACTACAGTGCTAAGTGCTGCAAGCCTAAGGTTGGTCCTGTGAAATACTTGATTGGCCGGACAATAAAGAAGTTTCCACTGTTGACACCTAGAGAATATGTATTAGCTTGGAGATTGTGGGAAGGAAAAGATAAAACATTCTACTGTTTTGTCAAGAAGAAGTATGTGCGTGTTGGTACTTTCAGATCTGGTTGGCGAATTAGAAAAGTACCTGGTAGAAATGCCTGCGAGATCAAAATGTATCACCAAGAAGATGCTGGTTTAAACGTGGAGATGGCAAAACTGGCCTTCGCGAAGGGCATATGGAGTTACGTATGTAAGATGGATAGTGCACTACGCAAATATTCTGCAATTAGCAATGATCAATCAAGTTCTGCTACCACTGCAATCACTTTGATAAAAAAGGTCCCCCCTGGATTAGAGGCGACGGATAGCAATGGAGCAACCTCTGTAGAACCCAATGTTCAGAGTCTTAAATTGTTGTTGCAGTTGGACCACTTGCAGCATATTATCAAGTACCTCTACGTCATATATTATTGGTTTATGATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

251

Amino Acids

28.52

Weight (kDa)

9.59

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55960 AT1G55960 AT3G13062 AT3G13062 AT3G13062
fragaria_vesca	FvH4_6g36480 FvH4_6g36480
malus_domestica	MD09G1168600.v1.1 MD10G1168000.v1.1 MD17G1158100.v1.1
prunus_persica	Prupe.3G027000_v2.0.a1
pyrus_communis	pycom09g08630 pycom17g15160
rosa_chinensis	RchiOBHm_Chr1g0356291 RchiOBHm_Chr1g0356301 RchiOBHm_Chr2g0148611
rosa_laevigata	RLG00000020355
rosa_multiflora	Rmu_sc0000048.1_g000024 Rmu_sc0007842.1_g000001 Rmu_ssc0000368.1_g000067
rosa_roxburghii	Rroxscaffold_2G00098580 Rroxscaffold_5G00343750
rosa_rugosa	Rorug02G0303100 Rorug02G0303200 Rorug02G0408100 Rorug05G0283200 Rorug05G0283300
rosa_samantha	Rh2AG466500 Rh2BG479600 Rh2CG453000 Rh2DG488400 Rh3DG124100 Rh4AG089800 Rh4AG118200 Rh4AG189300 Rh4CG097800 Rh5DG503900 Rh6CG162100 Rh6DG153700 Rh7BG309800 Rh7DG365700
rosa_wichuraiana	Rw2G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	494
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	1 cut(s)	133
AfaI	GTAC	3 cut(s)	379, 411, 719
AfiI	CCNNNNNNNGG	2 cut(s)	11, 233
AgsI	TTSAA	3 cut(s)	48, 118, 131
AjnI	CCWGG	2 cut(s)	412, 613
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	2 cut(s)	43, 94
Alw44I	GTGCAC	1 cut(s)	531
AlwI	GGATC	1 cut(s)	73
AoxI	GGCC	2 cut(s)	256, 486
ApaLI	GTGCAC	1 cut(s)	531
ApeKI	GCWGC	2 cut(s)	219, 703
ApoI	RAATTY	1 cut(s)	133
AspS9I	GGNCC	3 cut(s)	236, 607, 694
AsuHPI	GGTGA	1 cut(s)	437
AvaII	GGWCC	3 cut(s)	236, 607, 694
AxyI	CCTNAGG	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	535
Bbv12I	GWGCWC	1 cut(s)	535
BbvI	GCAGC	2 cut(s)	206, 715
BccI	CCATC	2 cut(s)	469, 517
BciT130I	CCWGG	2 cut(s)	414, 615
BclI	TGATCA	1 cut(s)	562
BcoDI	GTCTC	2 cut(s)	43, 94
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	2 cut(s)	205, 651
BglII	AGATCT	1 cut(s)	386
BisI	GCNGC	2 cut(s)	220, 704
BlsI	GCNGC	2 cut(s)	221, 705
Bme1390I	CCNGG	2 cut(s)	414, 615
Bme18I	GGWCC	3 cut(s)	236, 607, 694
BmgT120I	GGNCC	3 cut(s)	236, 607, 694
BmiI	GGNNCC	1 cut(s)	609
BmrFI	CCNGG	2 cut(s)	414, 615
BmsI	GCATC	2 cut(s)	97, 445
BsaAI	YACGTR	1 cut(s)	514
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	613
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 233
Bse1I	ACTGG	1 cut(s)	489
Bse21I	CCTNAGG	1 cut(s)	228
Bse3DI	GCAATG	3 cut(s)	54, 565, 643
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	2 cut(s)	414, 615
BseDI	CCNNGG	1 cut(s)	613
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	11, 233
BseMI	GCAATG	3 cut(s)	54, 565, 643
BseNI	ACTGG	1 cut(s)	489
BseSI	GKGCMC	1 cut(s)	535
BseXI	GCAGC	2 cut(s)	206, 715
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	2 cut(s)	258, 488
BsiHKAI	GWGCWC	1 cut(s)	535
BsiSI	CCGG	1 cut(s)	259
BslFI	GGGAC	2 cut(s)	182, 593
BslI	CCNNNNNNNGG	2 cut(s)	11, 233
BsmAI	GTCTC	2 cut(s)	43, 94
BsmFI	GGGAC	2 cut(s)	182, 593
BsnI	GGCC	2 cut(s)	258, 488
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp143I	GATC	6 cut(s)	65, 147, 193, 386, 432, 562
Bsp68I	TCGCGA	1 cut(s)	494
BspANI	GGCC	2 cut(s)	258, 488
BspFNI	CGCG	1 cut(s)	494
BspLI	GGNNCC	1 cut(s)	609
BspPI	GGATC	1 cut(s)	73
BsrDI	GCAATG	3 cut(s)	54, 565, 643
BsrI	ACTGG	1 cut(s)	489
BssECI	CCNNGG	1 cut(s)	613
BssMI	GATC	6 cut(s)	65, 147, 193, 386, 432, 562
Bst2UI	CCWGG	2 cut(s)	414, 615
Bst4CI	ACNGT	4 cut(s)	81, 209, 282, 347
BstBAI	YACGTR	1 cut(s)	514
BstC8I	GCNNGC	3 cut(s)	26, 224, 427
BstDEI	CTNAG	2 cut(s)	213, 228
BstFNI	CGCG	1 cut(s)	494
BstKTI	GATC	6 cut(s)	68, 150, 196, 389, 435, 565
BstMAI	GTCTC	2 cut(s)	43, 94
BstMBI	GATC	6 cut(s)	65, 147, 193, 386, 432, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 584
BstNI	CCWGG	2 cut(s)	414, 615
BstSCI	CCNGG	2 cut(s)	412, 613
BstSFI	CTRYAG	2 cut(s)	205, 651
BstSLI	GKGCMC	1 cut(s)	535
BstSNI	TACGTA	1 cut(s)	514
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	2 cut(s)	206, 715
BstX2I	RGATCY	2 cut(s)	65, 386
BstYI	RGATCY	2 cut(s)	65, 386
Bsu36I	CCTNAGG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	258, 488
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	3 cut(s)	214, 278, 582
BtuMI	TCGCGA	1 cut(s)	494
Cac8I	GCNNGC	3 cut(s)	26, 224, 427
Cfr13I	GGNCC	3 cut(s)	236, 607, 694
CsiI	ACCWGGT	1 cut(s)	412
Csp6I	GTAC	3 cut(s)	378, 410, 718
CviJI	RGCY	5 cut(s)	24, 226, 258, 308, 488
CviKI_1	RGCY	5 cut(s)	24, 226, 258, 308, 488
CviQI	GTAC	3 cut(s)	378, 410, 718
DdeI	CTNAG	2 cut(s)	213, 228
DpnI	GATC	6 cut(s)	67, 149, 195, 388, 434, 564
DpnII	GATC	6 cut(s)	65, 147, 193, 386, 432, 562
DraI	TTTAAA	1 cut(s)	465
EaeI	YGGCCR	1 cut(s)	256
Eco105I	TACGTA	1 cut(s)	514
Eco47I	GGWCC	3 cut(s)	236, 607, 694
Eco81I	CCTNAGG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	607
EcoRII	CCWGG	2 cut(s)	412, 613
FaqI	GGGAC	2 cut(s)	182, 593
FauNDI	CATATG	1 cut(s)	503
FbaI	TGATCA	1 cut(s)	562
Fnu4HI	GCNGC	2 cut(s)	220, 704
Fsp4HI	GCNGC	2 cut(s)	220, 704
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	2 cut(s)	220, 704
HaeIII	GGCC	2 cut(s)	258, 488
HapII	CCGG	1 cut(s)	259
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	3 cut(s)	44, 87, 670
HpaII	CCGG	1 cut(s)	259
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	3 cut(s)	77, 285, 533
Hpy188I	TCNGA	6 cut(s)	43, 94, 126, 156, 386, 669
Hpy188III	TCNNGA	3 cut(s)	63, 355, 493
Hpy8I	GTNNAC	3 cut(s)	77, 285, 533
Hpy99I	CGWCG	1 cut(s)	631
HpyAV	CCTTC	3 cut(s)	317, 490, 499
HpyCH4III	ACNGT	4 cut(s)	81, 209, 282, 347
HpyCH4IV	ACGT	3 cut(s)	468, 513, 726
HpyCH4V	TGCA	7 cut(s)	110, 222, 533, 551, 587, 688, 703
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 584
HpyF3I	CTNAG	2 cut(s)	213, 228
HpySE526I	ACGT	3 cut(s)	468, 513, 726
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	6 cut(s)	65, 147, 193, 386, 432, 562
LmnI	GCTCC	1 cut(s)	641
Lsp1109I	GCAGC	2 cut(s)	206, 715
LweI	GCATC	2 cut(s)	97, 445
MabI	ACCWGGT	1 cut(s)	412
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	3 cut(s)	468, 513, 726
MaeIII	GTNAC	2 cut(s)	100, 509
MalI	GATC	6 cut(s)	67, 149, 195, 388, 434, 564
MboI	GATC	6 cut(s)	65, 147, 193, 386, 432, 562
MboII	GAAGA	4 cut(s)	157, 188, 370, 464
MflI	RGATCY	2 cut(s)	65, 386
MhlI	GDGCHC	1 cut(s)	535
MluCI	AATT	4 cut(s)	133, 399, 552, 677
MlyI	GAGTC	2 cut(s)	96, 679
MmeI	TCCRAC	1 cut(s)	672
MnlI	CCTC	3 cut(s)	616, 658, 731
MseI	TTAA	2 cut(s)	464, 675
MspI	CCGG	1 cut(s)	259
MspR9I	CCNGG	2 cut(s)	414, 615
MssI	GTTTAAAC	1 cut(s)	465
MvaI	CCWGG	2 cut(s)	414, 615
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	2 cut(s)	485, 584
NdeI	CATATG	1 cut(s)	503
NdeII	GATC	6 cut(s)	65, 147, 193, 386, 432, 562
NlaIV	GGNNCC	1 cut(s)	609
NruI	TCGCGA	1 cut(s)	494
PfeI	GAWTC	1 cut(s)	44
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	221, 705
PleI	GAGTC	2 cut(s)	95, 678
PmeI	GTTTAAAC	1 cut(s)	465
PpsI	GAGTC	2 cut(s)	95, 678
Ppu21I	YACGTR	1 cut(s)	514
PpuMI	RGGWCCY	1 cut(s)	607
Psp5II	RGGWCCY	1 cut(s)	607
Psp6I	CCWGG	2 cut(s)	412, 613
PspGI	CCWGG	2 cut(s)	412, 613
PspN4I	GGNNCC	1 cut(s)	609
PspPI	GGNCC	3 cut(s)	236, 607, 694
PspPPI	RGGWCCY	1 cut(s)	607
PsuI	RGATCY	2 cut(s)	65, 386
PsyI	GACNNNGTC	1 cut(s)	173
RruI	TCGCGA	1 cut(s)	494
RsaI	GTAC	3 cut(s)	379, 411, 719
RsaNI	GTAC	3 cut(s)	378, 410, 718
SaqAI	TTAA	2 cut(s)	464, 675
SatI	GCNGC	2 cut(s)	220, 704
Sau3AI	GATC	6 cut(s)	65, 147, 193, 386, 432, 562
Sau96I	GGNCC	3 cut(s)	236, 607, 694
SchI	GAGTC	2 cut(s)	96, 679
ScrFI	CCNGG	2 cut(s)	414, 615
SduI	GDGCHC	1 cut(s)	535
SexAI	ACCWGGT	1 cut(s)	412
SfaNI	GCATC	2 cut(s)	97, 445
SfcI	CTRYAG	2 cut(s)	205, 651
SinI	GGWCC	3 cut(s)	236, 607, 694
SnaBI	TACGTA	1 cut(s)	514
Sse9I	AATT	4 cut(s)	133, 399, 552, 677
SspI	AATATT	1 cut(s)	545
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	412, 613
TaaI	ACNGT	4 cut(s)	81, 209, 282, 347
TaiI	ACGT	3 cut(s)	471, 516, 729
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	4 cut(s)	133, 399, 552, 677
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	2 cut(s)	464, 675
Tru9I	TTAA	2 cut(s)	464, 675
TscAI	CASTG	3 cut(s)	214, 285, 589
TseI	GCWGC	2 cut(s)	219, 703
TspGWI	ACGGA	1 cut(s)	644
TspRI	CASTG	3 cut(s)	214, 285, 589
Tth111I	GACNNNGTC	1 cut(s)	173
VneI	GTGCAC	1 cut(s)	531
VpaK11BI	GGWCC	3 cut(s)	236, 607, 694
XapI	RAATTY	1 cut(s)	133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.