Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002322

Physical Location & Seq

Genomic Coordinates Forward (+)

12970358 .. 12972709

Gene Structure 2352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g15160.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGTCAAAATCGCGGATTCGAGCAGATTTCACGGCCTATGCATACGGTCGTCGGAGGAATTTTGGCGCGAAAATATCCATGGCGGTTTCGCCACTCTCGTCGCCGTGCTCTTCGTCTTTGCTTGCCACTGTGCCAAGAGGTTCTTCTTTGGAAAACCCTCTGGCTCCAGTGCTTCTCCGGTCGGTCTATCGGATTCTGATCTCCCCACTTCTGGGTCTCGGATTCCGCCGCACAGCACCTTGGAACTGGTGACAGATGCAGATTTGAAGTTTCTGATTGATAACTTGGGGGAGAAAACGGGCGAAAATGAGAAATGGGAAAAGGTCATAGACAAAAGAAATGATATTCTATCCTACTATGCGAAGTGCTGCAAGCCTAAGGATAGTCCTTTGACATACTTGAGCGTGACGATATTTGAGAATTGCTCTCCTGAGAAGCTGAGAGACTTCTACATGGACAATGATTACAGGAAGCAATGGGATAAGATGCTGATTCAGCATGAGCAGTTACAGATGGACAAAAACAAGGGGGTTGAAGTTGGTCGGACAATAAAAAAGTTTCCACTGTTGACAGCCAGAGAATATGTATTAGCTTGGAGATTGTGGGAGGGGAAAGATAACACCTTTTATTGTTTTATCAAGGAATGTGAACATCCTTTGGCACCACGCCAGAAGAAGTATGTGCGTGTTAGTACTTTCAGATCTGGTTGGCGAATCCGAAAAGTGCCTGATACTAATGCCTGTGAGATCAAGATGTTTCATCAAGAAGATGCCGGTTTAAATGTGGAGATGGCAAAATTGGCTTTTTCTAGGGGCATATGGAGCTATGTGTGCAAGATGGGCAATGCACTTAACAGATATACTACAATCAGCTCTCATCAATCAAGGGCTGCTGCTTCTGCTGTCACGTTGATTAAAAAGGCCAGGACAACTTTCTTTGATGGATTAGTATTGTTTAAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

START

Protein Analysis

322

Amino Acids

36.9

Weight (kDa)

9.17

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55960 AT1G55960 AT3G13062 AT3G13062 AT3G13062
fragaria_vesca	FvH4_6g36480 FvH4_6g36480
malus_domestica	MD09G1168600.v1.1 MD10G1168000.v1.1 MD17G1158100.v1.1
prunus_persica	Prupe.3G027000_v2.0.a1
pyrus_communis	pycom09g08630 pycom17g15160
rosa_chinensis	RchiOBHm_Chr1g0356291 RchiOBHm_Chr1g0356301 RchiOBHm_Chr2g0148611
rosa_laevigata	RLG00000020355
rosa_multiflora	Rmu_sc0000048.1_g000024 Rmu_sc0007842.1_g000001 Rmu_ssc0000368.1_g000067
rosa_roxburghii	Rroxscaffold_2G00098580 Rroxscaffold_5G00343750
rosa_rugosa	Rorug02G0303100 Rorug02G0303200 Rorug02G0408100 Rorug05G0283200 Rorug05G0283300
rosa_samantha	Rh2AG466500 Rh2BG479600 Rh2CG453000 Rh2DG488400 Rh3DG124100 Rh4AG089800 Rh4AG118200 Rh4AG189300 Rh4CG097800 Rh5DG503900 Rh6CG162100 Rh6DG153700 Rh7BG309800 Rh7DG365700
rosa_wichuraiana	Rw2G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	661
AccII	CGCG	2 cut(s)	14, 69
AciI	CCGC	4 cut(s)	14, 84, 227, 230
AcsI	RAATTY	2 cut(s)	59, 959
AfaI	GTAC	1 cut(s)	694
AfiI	CCNNNNNNNGG	2 cut(s)	212, 213
AgsI	TTSAA	2 cut(s)	268, 536
AjnI	CCWGG	1 cut(s)	923
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AluBI	AGCT	4 cut(s)	439, 593, 825, 873
AluI	AGCT	4 cut(s)	439, 593, 825, 873
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	2 cut(s)	222, 438
AoxI	GGCC	2 cut(s)	34, 921
ApeKI	GCWGC	3 cut(s)	369, 890, 893
ApoI	RAATTY	2 cut(s)	59, 959
AspLEI	GCGC	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	262
AxyI	CCTNAGG	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	661
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	356, 877, 880
BccI	CCATC	4 cut(s)	508, 784, 832, 935
BceAI	ACGGC	2 cut(s)	49, 89
BciT130I	CCWGG	1 cut(s)	925
BcoDI	GTCTC	2 cut(s)	222, 438
BfaI	CTAG	1 cut(s)	810
BglII	AGATCT	1 cut(s)	701
BisI	GCNGC	4 cut(s)	230, 370, 891, 894
BlsI	GCNGC	4 cut(s)	231, 371, 892, 895
BmcAI	AGTACT	1 cut(s)	694
Bme1390I	CCNGG	1 cut(s)	925
BmiI	GGNNCC	2 cut(s)	166, 663
BmrFI	CCNGG	1 cut(s)	925
BmsI	GCATC	3 cut(s)	247, 477, 760
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
BpmI	CTGGAG	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	421
BsaBI	GATNNNNATC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	79, 240
BsaWI	WCCGGW	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 213
Bse118I	RCCGGY	1 cut(s)	773
Bse1I	ACTGG	2 cut(s)	168, 252
Bse21I	CCTNAGG	1 cut(s)	378
Bse3DI	GCAATG	2 cut(s)	482, 850
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	925
BseDI	CCNNGG	2 cut(s)	79, 240
BseGI	GGATG	1 cut(s)	652
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	212, 213
BseMI	GCAATG	2 cut(s)	482, 850
BseMII	CTCAG	2 cut(s)	423, 431
BseNI	ACTGG	2 cut(s)	168, 252
BseXI	GCAGC	3 cut(s)	356, 877, 880
Bsh1236I	CGCG	2 cut(s)	14, 69
Bsh1285I	CGRYCG	2 cut(s)	50, 183
BshFI	GGCC	2 cut(s)	36, 923
BshNI	GGYRCC	1 cut(s)	661
BsiEI	CGRYCG	2 cut(s)	50, 183
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	2 cut(s)	179, 774
BslI	CCNNNNNNNGG	2 cut(s)	212, 213
BsmAI	GTCTC	2 cut(s)	222, 438
BsnI	GGCC	2 cut(s)	36, 923
Bso31I	GGTCTC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	199, 701, 747
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	4 cut(s)	14, 84, 227, 230
BspANI	GGCC	2 cut(s)	36, 923
BspCNI	CTCAG	2 cut(s)	424, 432
BspFNI	CGCG	2 cut(s)	14, 69
BspLI	GGNNCC	2 cut(s)	166, 663
BspQI	GCTCTTC	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	661
BspTNI	GGTCTC	1 cut(s)	222
BsrDI	GCAATG	2 cut(s)	482, 850
BsrFI	RCCGGY	1 cut(s)	773
BsrI	ACTGG	2 cut(s)	168, 252
BssAI	RCCGGY	1 cut(s)	773
BssECI	CCNNGG	2 cut(s)	79, 240
BssMI	GATC	3 cut(s)	199, 701, 747
BssT1I	CCWWGG	2 cut(s)	79, 240
Bst2UI	CCWGG	1 cut(s)	925
Bst4CI	ACNGT	3 cut(s)	48, 131, 567
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	124, 374
BstDEI	CTNAG	3 cut(s)	378, 432, 440
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	652
BstFNI	CGCG	2 cut(s)	14, 69
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	3 cut(s)	202, 704, 750
BstMAI	GTCTC	2 cut(s)	222, 438
BstMBI	GATC	3 cut(s)	199, 701, 747
BstMCI	CGRYCG	2 cut(s)	50, 183
BstMWI	GCNNNNNNNGC	6 cut(s)	496, 800, 822, 831, 840, 899
BstNI	CCWGG	1 cut(s)	925
BstSCI	CCNGG	1 cut(s)	923
BstUI	CGCG	2 cut(s)	14, 69
BstV1I	GCAGC	3 cut(s)	356, 877, 880
BstX2I	RGATCY	1 cut(s)	701
BstYI	RGATCY	1 cut(s)	701
Bsu36I	CCTNAGG	1 cut(s)	378
BsuRI	GGCC	2 cut(s)	36, 923
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	652
BtsIMutI	CAGTG	3 cut(s)	127, 175, 563
Cac8I	GCNNGC	2 cut(s)	124, 374
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	773
Csp6I	GTAC	1 cut(s)	693
CviAII	CATG	3 cut(s)	80, 454, 500
CviQI	GTAC	1 cut(s)	693
DdeI	CTNAG	3 cut(s)	378, 432, 440
DpnI	GATC	3 cut(s)	201, 703, 749
DpnII	GATC	3 cut(s)	199, 701, 747
DraI	TTTAAA	2 cut(s)	780, 958
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	79, 240
Eco31I	GGTCTC	1 cut(s)	222
Eco81I	CCTNAGG	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	923
EcoT14I	CCWWGG	2 cut(s)	79, 240
EcoT22I	ATGCAT	1 cut(s)	44
ErhI	CCWWGG	2 cut(s)	79, 240
FaeI	CATG	3 cut(s)	83, 457, 503
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FatI	CATG	3 cut(s)	79, 453, 499
FauNDI	CATATG	1 cut(s)	818
Fnu4HI	GCNGC	4 cut(s)	230, 370, 891, 894
FokI	GGATG	1 cut(s)	639
Fsp4HI	GCNGC	4 cut(s)	230, 370, 891, 894
FspBI	CTAG	1 cut(s)	810
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	4 cut(s)	230, 370, 891, 894
GsuI	CTGGAG	1 cut(s)	151
HaeIII	GGCC	2 cut(s)	36, 923
HapII	CCGG	2 cut(s)	179, 774
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	3 cut(s)	83, 457, 503
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HinfI	GANTC	5 cut(s)	17, 194, 223, 493, 714
HpaII	CCGG	2 cut(s)	179, 774
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	2 cut(s)	570, 650
Hpy188I	TCNGA	8 cut(s)	55, 193, 199, 222, 276, 546, 701, 719
Hpy188III	TCNNGA	3 cut(s)	431, 751, 764
Hpy8I	GTNNAC	2 cut(s)	570, 650
Hpy99I	CGWCG	2 cut(s)	55, 104
HpyCH4III	ACNGT	3 cut(s)	48, 131, 567
HpyCH4IV	ACGT	1 cut(s)	908
HpyCH4V	TGCA	5 cut(s)	42, 260, 372, 834, 848
HpyF10VI	GCNNNNNNNGC	6 cut(s)	496, 800, 822, 831, 840, 899
HpyF3I	CTNAG	3 cut(s)	378, 432, 440
HpySE526I	ACGT	1 cut(s)	908
Hsp92II	CATG	3 cut(s)	83, 457, 503
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	199, 701, 747
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	2 cut(s)	170, 822
Lsp1109I	GCAGC	3 cut(s)	356, 877, 880
LweI	GCATC	3 cut(s)	247, 477, 760
MaeI	CTAG	1 cut(s)	810
MaeII	ACGT	1 cut(s)	908
MaeIII	GTNAC	4 cut(s)	250, 406, 507, 904
MalI	GATC	3 cut(s)	201, 703, 749
MboI	GATC	3 cut(s)	199, 701, 747
MboII	GAAGA	4 cut(s)	103, 136, 685, 779
MflI	RGATCY	1 cut(s)	701
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	4 cut(s)	59, 421, 797, 959
MmeI	TCCRAC	2 cut(s)	33, 524
MnlI	CCTC	4 cut(s)	49, 132, 169, 601
Mph1103I	ATGCAT	1 cut(s)	44
MseI	TTAA	5 cut(s)	779, 852, 915, 957, 964
MspI	CCGG	2 cut(s)	179, 774
MspR9I	CCNGG	1 cut(s)	925
MvaI	CCWGG	1 cut(s)	925
MvnI	CGCG	2 cut(s)	14, 69
MwoI	GCNNNNNNNGC	6 cut(s)	496, 800, 822, 831, 840, 899
NcoI	CCATGG	1 cut(s)	79
NdeI	CATATG	1 cut(s)	818
NdeII	GATC	3 cut(s)	199, 701, 747
NlaIII	CATG	3 cut(s)	83, 457, 503
NlaIV	GGNNCC	2 cut(s)	166, 663
NmuCI	GTSAC	3 cut(s)	250, 406, 904
NsiI	ATGCAT	1 cut(s)	44
PciSI	GCTCTTC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	5 cut(s)	17, 194, 223, 493, 714
PkrI	GCNGC	4 cut(s)	231, 371, 892, 895
Psp6I	CCWGG	1 cut(s)	923
PspGI	CCWGG	1 cut(s)	923
PspN4I	GGNNCC	2 cut(s)	166, 663
PsuI	RGATCY	1 cut(s)	701
RsaI	GTAC	1 cut(s)	694
RsaNI	GTAC	1 cut(s)	693
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	5 cut(s)	779, 852, 915, 957, 964
SatI	GCNGC	4 cut(s)	230, 370, 891, 894
Sau3AI	GATC	3 cut(s)	199, 701, 747
ScaI	AGTACT	1 cut(s)	694
ScrFI	CCNGG	1 cut(s)	925
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	9 cut(s)	143, 242, 327, 441, 595, 626, 827, 875, 911
SfaNI	GCATC	3 cut(s)	247, 477, 760
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
Sse9I	AATT	4 cut(s)	59, 421, 797, 959
SsiI	CCGC	4 cut(s)	14, 84, 227, 230
SspMI	CTAG	1 cut(s)	810
StyD4I	CCNGG	1 cut(s)	923
StyI	CCWWGG	2 cut(s)	79, 240
TaaI	ACNGT	3 cut(s)	48, 131, 567
TaiI	ACGT	1 cut(s)	911
TaqI	TCGA	1 cut(s)	20
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	4 cut(s)	59, 421, 797, 959
TatI	WGTACW	1 cut(s)	692
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	5 cut(s)	17, 194, 223, 493, 714
Tru1I	TTAA	5 cut(s)	779, 852, 915, 957, 964
Tru9I	TTAA	5 cut(s)	779, 852, 915, 957, 964
TscAI	CASTG	3 cut(s)	134, 175, 570
TseFI	GTSAC	3 cut(s)	250, 406, 904
TseI	GCWGC	3 cut(s)	369, 890, 893
Tsp45I	GTSAC	3 cut(s)	250, 406, 904
TspDTI	ATGAA	1 cut(s)	749
TspRI	CASTG	3 cut(s)	134, 175, 570
XapI	RAATTY	2 cut(s)	59, 959
XspI	CTAG	1 cut(s)	810
ZrmI	AGTACT	1 cut(s)	694
Zsp2I	ATGCAT	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.