Rh3DG124100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002322
Physical Location & Seq
Forward (+)
10508779 .. 10508997
219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG124100.1

Sequence Viewer

Length: 219 bp
ATGGTGAGGAAGGGAGCTGCCGGAGCCGAGTCGCGTGAGGCGTCTCAAGTCGAAATTGGAGATCTGAGTGAATCAGAGATGAGTAGAGAATCTTCTCTAGTGAGAGAATCGGAGATGAGTAGAGAATCAGAGAGATCTGAGTTGGACTCCAGTGAGGTAGCTCCGATCGGAGCTTCTTTGTCGTCGTCGTCGTCTTCAGGCATGGCGGCGCCGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.53

Weight (kDa)

4.41

Isoelectric Point (pI)

96.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 208
AccII CGCG 1 cut(s) 34
AciI CCGC 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 180
AcyI GRCGYC 2 cut(s) 41, 209
AluBI AGCT 3 cut(s) 17, 161, 173
AluI AGCT 3 cut(s) 17, 161, 173
Alw26I GTCTC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 16
BanI GGYRCC 1 cut(s) 208
BarI GAAGNNNNNNTAC 2 cut(s) 76, 108
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 4
BceAI ACGGC 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 1 cut(s) 98
BfoI RGCGCY 1 cut(s) 212
BglII AGATCT 2 cut(s) 61, 134
BisI GCNGC 2 cut(s) 18, 207
BlsI GCNGC 2 cut(s) 19, 208
BmiI GGNNCC 2 cut(s) 25, 210
BpiI GAAGAC 1 cut(s) 186
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BpmI CTGGAG 1 cut(s) 133
BpuEI CTTGAG 1 cut(s) 30
BsaHI GRCGYC 2 cut(s) 41, 209
Bse1I ACTGG 1 cut(s) 150
BseMII CTCAG 2 cut(s) 56, 129
BseNI ACTGG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 34
Bsh1285I CGRYCG 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 208
BsiEI CGRYCG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 48
BsmBI CGTCTC 1 cut(s) 48
Bsp143I GATC 3 cut(s) 61, 134, 165
BspACI CCGC 1 cut(s) 206
BspCNI CTCAG 2 cut(s) 57, 130
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 25, 210
BspT107I GGYRCC 1 cut(s) 208
BsrI ACTGG 1 cut(s) 150
BssMI GATC 3 cut(s) 61, 134, 165
BssNI GRCGYC 2 cut(s) 41, 209
BstACI GRCGYC 2 cut(s) 41, 209
BstDEI CTNAG 2 cut(s) 65, 138
BstFNI CGCG 1 cut(s) 34
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 3 cut(s) 64, 137, 168
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 3 cut(s) 61, 134, 165
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 4
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 2 cut(s) 61, 134
BstYI RGATCY 2 cut(s) 61, 134
BtsIMutI CAGTG 1 cut(s) 157
CfoI GCGC 1 cut(s) 211
CseI GACGC 1 cut(s) 30
CviAII CATG 1 cut(s) 202
CviJI RGCY 4 cut(s) 17, 26, 161, 173
CviKI_1 RGCY 4 cut(s) 17, 26, 161, 173
DdeI CTNAG 2 cut(s) 65, 138
DinI GGCGCC 1 cut(s) 210
DpnI GATC 3 cut(s) 63, 136, 167
DpnII GATC 3 cut(s) 61, 134, 165
Eco57I CTGAAG 1 cut(s) 180
EgeI GGCGCC 1 cut(s) 210
EheI GGCGCC 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 1 cut(s) 205
FaiI YATR 1 cut(s) 203
FatI CATG 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 18, 207
Fsp4HI GCNGC 2 cut(s) 18, 207
FspBI CTAG 1 cut(s) 98
GlaI GCGC 1 cut(s) 210
GluI GCNGC 2 cut(s) 18, 207
GsuI CTGGAG 1 cut(s) 133
HaeII RGCGCY 1 cut(s) 212
HapII CCGG 1 cut(s) 21
HgaI GACGC 1 cut(s) 30
HhaI GCGC 1 cut(s) 211
Hin1I GRCGYC 2 cut(s) 41, 209
Hin1II CATG 1 cut(s) 205
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HinfI GANTC 6 cut(s) 29, 71, 89, 107, 125, 146
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 7 cut(s) 66, 76, 112, 130, 139, 165, 170
Hpy99I CGWCG 3 cut(s) 187, 190, 193
HpyAV CCTTC 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 2 cut(s) 65, 138
Hsp92I GRCGYC 2 cut(s) 41, 209
Hsp92II CATG 1 cut(s) 205
HspAI GCGC 1 cut(s) 209
KasI GGCGCC 1 cut(s) 208
Kzo9I GATC 3 cut(s) 61, 134, 165
LmnI GCTCC 4 cut(s) 14, 23, 166, 170
LpnPI CCDG 3 cut(s) 34, 163, 183
Lsp1109I GCAGC 1 cut(s) 4
MaeI CTAG 1 cut(s) 98
MalI GATC 3 cut(s) 63, 136, 167
MboI GATC 3 cut(s) 61, 134, 165
MboII GAAGA 2 cut(s) 84, 186
MflI RGATCY 2 cut(s) 61, 134
MluCI AATT 1 cut(s) 54
Mly113I GGCGCC 1 cut(s) 209
MlyI GAGTC 2 cut(s) 38, 140
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 2 cut(s) 31, 148
MspI CCGG 1 cut(s) 21
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 1 cut(s) 23
NarI GGCGCC 1 cut(s) 209
NdeII GATC 3 cut(s) 61, 134, 165
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 2 cut(s) 25, 210
NmeAIII GCCGAG 1 cut(s) 52
PcsI WCGNNNNNNNCGW 2 cut(s) 38, 188
PfeI GAWTC 4 cut(s) 71, 89, 107, 125
PkrI GCNGC 2 cut(s) 19, 208
Ple19I CGATCG 1 cut(s) 168
PleI GAGTC 2 cut(s) 37, 140
PluTI GGCGCC 1 cut(s) 212
PpsI GAGTC 2 cut(s) 37, 140
PspN4I GGNNCC 2 cut(s) 25, 210
PsuI RGATCY 2 cut(s) 61, 134
PvuI CGATCG 1 cut(s) 168
SatI GCNGC 2 cut(s) 18, 207
Sau3AI GATC 3 cut(s) 61, 134, 165
SchI GAGTC 2 cut(s) 38, 140
SetI ASST 4 cut(s) 19, 159, 163, 175
SfoI GGCGCC 1 cut(s) 210
SgeI CNNG 9 cut(s) 33, 40, 45, 47, 59, 110, 162, 210, 214
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
Sse9I AATT 1 cut(s) 54
SsiI CCGC 1 cut(s) 206
SspDI GGCGCC 1 cut(s) 208
SspMI CTAG 1 cut(s) 98
TaqI TCGA 1 cut(s) 51
TasI AATT 1 cut(s) 54
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 4 cut(s) 71, 89, 107, 125
TscAI CASTG 1 cut(s) 157
TseI GCWGC 1 cut(s) 17
TspRI CASTG 1 cut(s) 157
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.