Rroxscaffold_5G00343750

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002322
Physical Location & Seq
Reverse (-)
13417271 .. 13420336
3066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00343750.1

Sequence Viewer

Length: 522 bp
ATGCTAATTGAGCATGAACAGTTACATGTGGACAAAAACAATGGGGTTGAAGTTGGCCGGACAATAAAGAAGTTTCCACTGTTGACACCTAGAGAATATGTATTAGCTTGGAGATTGTGGGAAGGAAAAGATAAAACATTCTTCTGTTTTGTCAAGGAATGTGAACATTCTTTGGCACCATGGCAGAAGAAGTATGTGGGTGTTGGTACTTTCAGATCTGGTTGGCGAATTAGAAAAGTACTTGGTAGAAATGCCTGCGAGATCAAAATGTATCACCAAGAAGATGCTGGTTTAAACGTGGAGATGGCAAAACTGGCCTTCGCGAAGGGCGTATGGAGTTACGTATGTAAGATGGATAGTGCACTATGCAAATATTCTGCAATCAGCAATGATCAATCAAGTTCTACTGTCACTGCAGTCACTTTGATAAAAAAAGGTCCCCCTGGATTTGAGGCGACGGATAGCAATGGAGCAACCTCTGGAGAACCCAATGTTCAGAGTCTTAAATTGTTGTTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

173

Amino Acids

19.47

Weight (kDa)

9.07

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AccII CGCG 1 cut(s) 323
AcoI YGGCCR 1 cut(s) 55
AfaI GTAC 2 cut(s) 208, 240
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 1 cut(s) 442
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw21I GWGCWC 1 cut(s) 364
Alw44I GTGCAC 1 cut(s) 360
AoxI GGCC 2 cut(s) 55, 315
ApaLI GTGCAC 1 cut(s) 360
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 364
BanI GGYRCC 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 364
BccI CCATC 2 cut(s) 298, 346
BciT130I CCWGG 1 cut(s) 444
BclI TGATCA 1 cut(s) 391
BfaI CTAG 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 414
BglII AGATCT 1 cut(s) 215
BmcAI AGTACT 1 cut(s) 240
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 2 cut(s) 177, 439
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 501
BsaAI YACGTR 1 cut(s) 343
BsaJI CCNNGG 2 cut(s) 179, 442
Bse1I ACTGG 1 cut(s) 318
Bse3DI GCAATG 2 cut(s) 394, 472
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 179, 442
BseMI GCAATG 2 cut(s) 394, 472
BseNI ACTGG 1 cut(s) 318
BseSI GKGCMC 1 cut(s) 364
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 2 cut(s) 57, 317
BshNI GGYRCC 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 364
BsiSI CCGG 1 cut(s) 58
BslFI GGGAC 1 cut(s) 423
BsmFI GGGAC 1 cut(s) 423
BsnI GGCC 2 cut(s) 57, 317
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 3 cut(s) 215, 261, 391
Bsp19I CCATGG 1 cut(s) 179
Bsp68I TCGCGA 1 cut(s) 323
BspANI GGCC 2 cut(s) 57, 317
BspFNI CGCG 1 cut(s) 323
BspLI GGNNCC 2 cut(s) 177, 439
BspMAI CTGCAG 1 cut(s) 418
BspT107I GGYRCC 1 cut(s) 175
BsrDI GCAATG 2 cut(s) 394, 472
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 179, 442
BssMI GATC 3 cut(s) 215, 261, 391
BssT1I CCWWGG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 3 cut(s) 21, 81, 409
BstBAI YACGTR 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 256
BstDSI CCRYGG 1 cut(s) 179
BstFNI CGCG 1 cut(s) 323
BstKTI GATC 3 cut(s) 218, 264, 394
BstMBI GATC 3 cut(s) 215, 261, 391
BstMWI GCNNNNNNNGC 2 cut(s) 10, 314
BstNI CCWGG 1 cut(s) 444
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 1 cut(s) 414
BstSLI GKGCMC 1 cut(s) 364
BstSNI TACGTA 1 cut(s) 343
BstUI CGCG 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BsuRI GGCC 2 cut(s) 57, 317
BtgI CCRYGG 1 cut(s) 179
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 2 cut(s) 77, 411
BtuMI TCGCGA 1 cut(s) 323
Cac8I GCNNGC 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 437
Csp6I GTAC 2 cut(s) 207, 239
CviAII CATG 3 cut(s) 14, 26, 180
CviJI RGCY 3 cut(s) 57, 107, 317
CviKI_1 RGCY 3 cut(s) 57, 107, 317
CviQI GTAC 2 cut(s) 207, 239
DpnI GATC 3 cut(s) 217, 263, 393
DpnII GATC 3 cut(s) 215, 261, 391
DraI TTTAAA 1 cut(s) 294
EaeI YGGCCR 1 cut(s) 55
Eco105I TACGTA 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 437
EcoO109I RGGNCCY 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 3 cut(s) 17, 29, 183
FaiI YATR 8 cut(s) 15, 27, 99, 181, 195, 334, 346, 367
FaqI GGGAC 1 cut(s) 423
FatI CATG 3 cut(s) 13, 25, 179
FbaI TGATCA 1 cut(s) 391
FspBI CTAG 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 501
HaeIII GGCC 2 cut(s) 57, 317
HapII CCGG 1 cut(s) 58
Hin1II CATG 3 cut(s) 17, 29, 183
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 1 cut(s) 499
HpaII CCGG 1 cut(s) 58
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 4 cut(s) 31, 84, 164, 362
Hpy188I TCNGA 2 cut(s) 215, 498
Hpy188III TCNNGA 2 cut(s) 322, 480
Hpy8I GTNNAC 4 cut(s) 31, 84, 164, 362
Hpy99I CGWCG 1 cut(s) 460
HpyAV CCTTC 3 cut(s) 116, 319, 328
HpyCH4III ACNGT 3 cut(s) 21, 81, 409
HpyCH4IV ACGT 2 cut(s) 297, 342
HpyCH4V TGCA 5 cut(s) 362, 369, 380, 416, 517
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 314
HpySE526I ACGT 2 cut(s) 297, 342
Hsp92II CATG 3 cut(s) 17, 29, 183
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 3 cut(s) 215, 261, 391
LmnI GCTCC 1 cut(s) 470
LpnPI CCDG 8 cut(s) 71, 204, 268, 273, 299, 429, 456, 465
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 90
MaeII ACGT 2 cut(s) 297, 342
MaeIII GTNAC 4 cut(s) 21, 338, 409, 418
MalI GATC 3 cut(s) 217, 263, 393
MboI GATC 3 cut(s) 215, 261, 391
MboII GAAGA 3 cut(s) 133, 199, 293
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 3 cut(s) 6, 228, 506
MlyI GAGTC 1 cut(s) 508
MnlI CCTC 2 cut(s) 445, 487
MseI TTAA 2 cut(s) 293, 504
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 444
MssI GTTTAAAC 1 cut(s) 294
MvaI CCWGG 1 cut(s) 444
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 10, 314
NcoI CCATGG 1 cut(s) 179
NdeII GATC 3 cut(s) 215, 261, 391
NlaIII CATG 3 cut(s) 17, 29, 183
NlaIV GGNNCC 2 cut(s) 177, 439
NmuCI GTSAC 2 cut(s) 409, 418
NruI TCGCGA 1 cut(s) 323
NspI RCATGY 1 cut(s) 29
PciI ACATGT 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PleI GAGTC 1 cut(s) 507
PmeI GTTTAAAC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 507
Ppu21I YACGTR 1 cut(s) 343
PpuMI RGGWCCY 1 cut(s) 437
PscI ACATGT 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 2 cut(s) 177, 439
PspPI GGNCC 1 cut(s) 437
PspPPI RGGWCCY 1 cut(s) 437
PstI CTGCAG 1 cut(s) 418
PsuI RGATCY 1 cut(s) 215
RruI TCGCGA 1 cut(s) 323
RsaI GTAC 2 cut(s) 208, 240
RsaNI GTAC 2 cut(s) 207, 239
SaqAI TTAA 2 cut(s) 293, 504
Sau3AI GATC 3 cut(s) 215, 261, 391
Sau96I GGNCC 1 cut(s) 437
ScaI AGTACT 1 cut(s) 240
SchI GAGTC 1 cut(s) 508
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 1 cut(s) 364
SetI ASST 6 cut(s) 91, 109, 300, 345, 439, 479
SfaNI GCATC 1 cut(s) 274
SfcI CTRYAG 1 cut(s) 414
SinI GGWCC 1 cut(s) 437
SnaBI TACGTA 1 cut(s) 343
Sse9I AATT 3 cut(s) 6, 228, 506
SspI AATATT 1 cut(s) 374
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 3 cut(s) 21, 81, 409
TaiI ACGT 2 cut(s) 300, 345
TasI AATT 3 cut(s) 6, 228, 506
TatI WGTACW 1 cut(s) 238
Tru1I TTAA 2 cut(s) 293, 504
Tru9I TTAA 2 cut(s) 293, 504
TscAI CASTG 2 cut(s) 84, 418
TseFI GTSAC 2 cut(s) 409, 418
Tsp45I GTSAC 2 cut(s) 409, 418
TspDTI ATGAA 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 2 cut(s) 84, 418
VneI GTGCAC 1 cut(s) 360
VpaK11BI GGWCC 1 cut(s) 437
XceI RCATGY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 284
XspI CTAG 1 cut(s) 90
ZrmI AGTACT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.