Rh5DG503900

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002322
Physical Location & Seq
Forward (+)
78813214 .. 78817762
4549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG503900.1

Sequence Viewer

Length: 423 bp
ATGGTAACAGATGCAGATTTGAAGTTTCTGATTGAAAATTTGGACGAGAAGATCGGTCAGAATAAGAAATGGGACAATGTCATAGAGAAAGGAAATGATCTTCTATACTACAGTGCTAAGTGCTGCAAGCCTAAGGTTGGTCCTGTGAAATACTTGAGTGTGACAATATTTGAGGACTGCTCTCCTGAGATGCTGAGAGACTTCTACATGGATAATGATTACAGAAAGCAATGGGATAAAATGCTGATTGAGCATGAACAGTTACATGTGGACAAAAACAATGGGGTTGAAGTTGGCCGGACAATAAAGAAGTTTCCACTGTTGACACCTAGAGAATATGTATTAGCTTGGAGATTGTGGGAAGGAAAAGATAAAACATTCTACTGTTTTGTGCTGGAGGTAATTGAGATTTTGAACCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

140

Amino Acids

16.67

Weight (kDa)

5.47

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 295
AcsI RAATTY 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 137
AflIII ACRYGT 1 cut(s) 265
AgsI TTSAA 4 cut(s) 22, 35, 290, 415
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
Alw26I GTCTC 1 cut(s) 192
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 1 cut(s) 123
ApoI RAATTY 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 140
AvaII GGWCC 1 cut(s) 140
AxyI CCTNAGG 1 cut(s) 132
BbvI GCAGC 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 109
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 140
BmsI GCATC 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpmI CTGGAG 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse21I CCTNAGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 236
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 1 cut(s) 236
BseMII CTCAG 2 cut(s) 177, 185
BseXI GCAGC 1 cut(s) 110
BshFI GGCC 1 cut(s) 297
BsiSI CCGG 1 cut(s) 298
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 1 cut(s) 297
Bsp143I GATC 2 cut(s) 51, 97
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 2 cut(s) 178, 186
BsrDI GCAATG 1 cut(s) 236
BssMI GATC 2 cut(s) 51, 97
Bst4CI ACNGT 4 cut(s) 113, 261, 321, 386
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 4 cut(s) 117, 132, 186, 194
BstKTI GATC 2 cut(s) 54, 100
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 2 cut(s) 51, 97
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstNSI RCATGY 1 cut(s) 269
BstSFI CTRYAG 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 110
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 1 cut(s) 297
BtsIMutI CAGTG 2 cut(s) 118, 317
Cac8I GCNNGC 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 140
CviAII CATG 3 cut(s) 208, 254, 266
CviJI RGCY 3 cut(s) 130, 297, 347
CviKI_1 RGCY 3 cut(s) 130, 297, 347
DdeI CTNAG 4 cut(s) 117, 132, 186, 194
DpnI GATC 2 cut(s) 53, 99
DpnII GATC 2 cut(s) 51, 97
EaeI YGGCCR 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 140
Eco81I CCTNAGG 1 cut(s) 132
FaeI CATG 3 cut(s) 211, 257, 269
FaiI YATR 7 cut(s) 83, 106, 209, 255, 267, 339, 421
FaqI GGGAC 1 cut(s) 86
FatI CATG 3 cut(s) 207, 253, 265
Fnu4HI GCNGC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 124
FspBI CTAG 1 cut(s) 330
GluI GCNGC 1 cut(s) 124
GsuI CTGGAG 1 cut(s) 416
HaeIII GGCC 1 cut(s) 297
HapII CCGG 1 cut(s) 298
Hin1II CATG 3 cut(s) 211, 257, 269
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HpaII CCGG 1 cut(s) 298
Hpy166II GTNNAC 2 cut(s) 271, 324
Hpy188I TCNGA 2 cut(s) 30, 60
Hpy188III TCNNGA 1 cut(s) 185
Hpy8I GTNNAC 2 cut(s) 271, 324
HpyAV CCTTC 1 cut(s) 356
HpyCH4III ACNGT 4 cut(s) 113, 261, 321, 386
HpyCH4V TGCA 2 cut(s) 14, 126
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpyF3I CTNAG 4 cut(s) 117, 132, 186, 194
Hsp92II CATG 3 cut(s) 211, 257, 269
Kzo9I GATC 2 cut(s) 51, 97
LpnPI CCDG 4 cut(s) 156, 198, 311, 380
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 1 cut(s) 180
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 3 cut(s) 4, 160, 261
MalI GATC 2 cut(s) 53, 99
MboI GATC 2 cut(s) 51, 97
MboII GAAGA 2 cut(s) 61, 92
MluCI AATT 2 cut(s) 37, 402
MnlI CCTC 2 cut(s) 166, 391
MspI CCGG 1 cut(s) 298
MwoI GCNNNNNNNGC 1 cut(s) 250
NdeII GATC 2 cut(s) 51, 97
NlaIII CATG 3 cut(s) 211, 257, 269
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 1 cut(s) 269
PciI ACATGT 1 cut(s) 265
PflFI GACNNNGTC 1 cut(s) 77
PkrI GCNGC 1 cut(s) 125
PscI ACATGT 1 cut(s) 265
PspPI GGNCC 1 cut(s) 140
PsyI GACNNNGTC 1 cut(s) 77
SatI GCNGC 1 cut(s) 124
Sau3AI GATC 2 cut(s) 51, 97
Sau96I GGNCC 1 cut(s) 140
SetI ASST 5 cut(s) 138, 331, 349, 402, 420
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 109
SinI GGWCC 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 2 cut(s) 37, 402
SspI AATATT 1 cut(s) 168
SspMI CTAG 1 cut(s) 330
TaaI ACNGT 4 cut(s) 113, 261, 321, 386
TaqII GACCGA 1 cut(s) 44
TasI AATT 2 cut(s) 37, 402
TscAI CASTG 2 cut(s) 118, 324
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 123
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 270
TspRI CASTG 2 cut(s) 118, 324
Tth111I GACNNNGTC 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 140
XapI RAATTY 1 cut(s) 37
XceI RCATGY 1 cut(s) 269
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.