Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000048.1

Orthogroup ID

OG0002322

Physical Location & Seq

Genomic Coordinates Forward (+)

96559 .. 97740

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000048.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atggtgaacatggtggacttgggccgattccacgccctgtttcaaggctcgtcggaggagttttggcgggaaaacgtttatgggggatgggctactcttgtggctgtgcttattatcttggcttggcactgtttcaagggttttttgtataagaaaacgtcttcttcctctgcttcttcatctacagttggtgtctctgattcaaatcccagtgcttctggctctgggggttcacagactagagtctcggaaatggtaacagatgcagatttgaagtttctgattgaaaaattggacgagaagatcggtcagaataagaaatgggacaatgtcatagagaaaggaaatgatcttctatactacagtgctaagtgctgcaagcctaaggttggtcctgtgaaatacttgagtgtgacaatatttgaggactgctctcctgagatgctgagagacttctacatggataatgattacagaaagcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

START

Protein Analysis

161

Amino Acids

18.08

Weight (kDa)

6.12

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55960 AT1G55960 AT3G13062 AT3G13062 AT3G13062
fragaria_vesca	FvH4_6g36480 FvH4_6g36480
malus_domestica	MD09G1168600.v1.1 MD10G1168000.v1.1 MD17G1158100.v1.1
prunus_persica	Prupe.3G027000_v2.0.a1
pyrus_communis	pycom09g08630 pycom17g15160
rosa_chinensis	RchiOBHm_Chr1g0356291 RchiOBHm_Chr1g0356301 RchiOBHm_Chr2g0148611
rosa_laevigata	RLG00000020355
rosa_multiflora	Rmu_sc0000048.1_g000024 Rmu_sc0007842.1_g000001 Rmu_ssc0000368.1_g000067
rosa_roxburghii	Rroxscaffold_2G00098580 Rroxscaffold_5G00343750
rosa_rugosa	Rorug02G0303100 Rorug02G0303200 Rorug02G0408100 Rorug05G0283200 Rorug05G0283300
rosa_samantha	Rh2AG466500 Rh2BG479600 Rh2CG453000 Rh2DG488400 Rh3DG124100 Rh4AG089800 Rh4AG118200 Rh4AG189300 Rh4CG097800 Rh5DG503900 Rh6CG162100 Rh6DG153700 Rh7BG309800 Rh7DG365700
rosa_wichuraiana	Rw2G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	67
AclI	AACGTT	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgsI	TTSAA	5 cut(s)	44, 136, 204, 274, 287
Alw26I	GTCTC	3 cut(s)	199, 250, 444
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	375
AspS9I	GGNCC	2 cut(s)	22, 392
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	392
AxyI	CCTNAGG	1 cut(s)	384
BbsI	GAAGAC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	1 cut(s)	81
BcoDI	GTCTC	3 cut(s)	199, 250, 444
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	2 cut(s)	183, 361
BisI	GCNGC	1 cut(s)	376
BlsI	GCNGC	1 cut(s)	377
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	2 cut(s)	22, 392
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	2 cut(s)	253, 432
BmuI	ACTGGG	1 cut(s)	204
BoxI	GACNNNNGTC	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	416, 448
BpuEI	CTTGAG	1 cut(s)	427
BsaBI	GATNNNNATC	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	210
Bse21I	CCTNAGG	1 cut(s)	384
Bse8I	GATNNNNATC	1 cut(s)	204
BseGI	GGATG	1 cut(s)	92
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMII	CTCAG	2 cut(s)	429, 437
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	362
BshFI	GGCC	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	3 cut(s)	199, 250, 444
BsmFI	GGGAC	1 cut(s)	338
BsnI	GGCC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	303, 349
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	2 cut(s)	430, 438
BsrI	ACTGG	1 cut(s)	210
BssMI	GATC	2 cut(s)	303, 349
Bst4CI	ACNGT	3 cut(s)	131, 187, 365
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	4 cut(s)	369, 384, 438, 446
BstF5I	GGATG	1 cut(s)	92
BstKTI	GATC	2 cut(s)	306, 352
BstMAI	GTCTC	3 cut(s)	199, 250, 444
BstMBI	GATC	2 cut(s)	303, 349
BstPAI	GACNNNNGTC	1 cut(s)	242
BstSFI	CTRYAG	2 cut(s)	183, 361
BstV1I	GCAGC	1 cut(s)	362
BstV2I	GAAGAC	1 cut(s)	153
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	92
BtsIMutI	CAGTG	3 cut(s)	127, 217, 370
Cac8I	GCNNGC	1 cut(s)	380
Cfr13I	GGNCC	2 cut(s)	22, 392
CviAII	CATG	2 cut(s)	10, 460
CviJI	RGCY	7 cut(s)	24, 48, 92, 104, 122, 222, 382
CviKI_1	RGCY	7 cut(s)	24, 48, 92, 104, 122, 222, 382
DdeI	CTNAG	4 cut(s)	369, 384, 438, 446
DpnI	GATC	2 cut(s)	305, 351
DpnII	GATC	2 cut(s)	303, 349
Eco47I	GGWCC	1 cut(s)	392
Eco81I	CCTNAGG	1 cut(s)	384
FaeI	CATG	2 cut(s)	13, 463
FaiI	YATR	6 cut(s)	11, 81, 150, 335, 358, 461
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	2 cut(s)	9, 459
FauI	CCCGC	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	376
FokI	GGATG	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	376
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	1 cut(s)	376
HaeIII	GGCC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	13, 463
HinfI	GANTC	3 cut(s)	27, 200, 243
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	7, 16, 233
Hpy188I	TCNGA	5 cut(s)	55, 199, 250, 282, 312
Hpy188III	TCNNGA	1 cut(s)	437
Hpy8I	GTNNAC	3 cut(s)	7, 16, 233
Hpy99I	CGWCG	1 cut(s)	55
HpyCH4III	ACNGT	3 cut(s)	131, 187, 365
HpyCH4IV	ACGT	2 cut(s)	75, 158
HpyCH4V	TGCA	2 cut(s)	266, 378
HpyF3I	CTNAG	4 cut(s)	369, 384, 438, 446
HpySE526I	ACGT	2 cut(s)	75, 158
Hsp92II	CATG	2 cut(s)	13, 463
Kzo9I	GATC	2 cut(s)	303, 349
LpnPI	CCDG	6 cut(s)	50, 204, 210, 223, 408, 450
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	2 cut(s)	253, 432
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	2 cut(s)	75, 158
MaeIII	GTNAC	2 cut(s)	256, 412
MalI	GATC	2 cut(s)	305, 351
MboI	GATC	2 cut(s)	303, 349
MboII	GAAGA	5 cut(s)	153, 156, 168, 313, 344
MluCI	AATT	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	252
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	3 cut(s)	49, 178, 418
NdeII	GATC	2 cut(s)	303, 349
NlaIII	CATG	2 cut(s)	13, 463
NmuCI	GTSAC	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	27, 200
PflFI	GACNNNGTC	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	377
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PshAI	GACNNNNGTC	1 cut(s)	242
Psp1406I	AACGTT	1 cut(s)	75
PspPI	GGNCC	2 cut(s)	22, 392
PsyI	GACNNNGTC	1 cut(s)	329
SatI	GCNGC	1 cut(s)	376
Sau3AI	GATC	2 cut(s)	303, 349
Sau96I	GGNCC	2 cut(s)	22, 392
SchI	GAGTC	1 cut(s)	252
SetI	ASST	3 cut(s)	78, 161, 390
SfaNI	GCATC	2 cut(s)	253, 432
SfcI	CTRYAG	2 cut(s)	183, 361
SinI	GGWCC	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
Sse9I	AATT	1 cut(s)	290
SsiI	CCGC	1 cut(s)	67
SspI	AATATT	1 cut(s)	420
SspMI	CTAG	1 cut(s)	240
TaaI	ACNGT	3 cut(s)	131, 187, 365
TaiI	ACGT	2 cut(s)	78, 161
TaqII	GACCGA	1 cut(s)	296
TasI	AATT	1 cut(s)	290
TfiI	GAWTC	2 cut(s)	27, 200
TscAI	CASTG	3 cut(s)	134, 217, 370
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	375
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	168
TspRI	CASTG	3 cut(s)	134, 217, 370
Tth111I	GACNNNGTC	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	392
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.