Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000368.1

Orthogroup ID

OG0002322

Physical Location & Seq

Genomic Coordinates Reverse (-)

309495 .. 311009

Gene Structure 1515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000368.1_g000067.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atggtaacagatgcagatttgaagtttctgattgaaaatttggacgagaagatcggtcagaataagaaatgggacaatgtcatagagaaaggaaatgatcttctatactacagtgctaagtgctgcaagcctaaggttggtcctgtgaaatacttgagtgtgacaatatttgaggactgctctcctgagatgctgaaagacttctacatggataatgattacagaaagcaatgcgataaaatgctgattgagcatgaacagttacatgtggacaaaaacaatggggttgaatttggccggacaataaagaagtttcctctattgacacctagagaatatgtattagattggagattgtgggaaggaaaagataaaacattctactgttttgtcaaggtacccctactgtttagtttttggctcgacgtggagagaggagtgcagaggaggaagggagagaaaatgagaagcgaagaggaataccaagagttcgtagaagatatgcagccctatctcacccagcctggctccgactgtaaatctgccctcgcttttctccaacaaaggtctgcccattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

192

Amino Acids

22.82

Weight (kDa)

5.74

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55960 AT1G55960 AT3G13062 AT3G13062 AT3G13062
fragaria_vesca	FvH4_6g36480 FvH4_6g36480
malus_domestica	MD09G1168600.v1.1 MD10G1168000.v1.1 MD17G1158100.v1.1
prunus_persica	Prupe.3G027000_v2.0.a1
pyrus_communis	pycom09g08630 pycom17g15160
rosa_chinensis	RchiOBHm_Chr1g0356291 RchiOBHm_Chr1g0356301 RchiOBHm_Chr2g0148611
rosa_laevigata	RLG00000020355
rosa_multiflora	Rmu_sc0000048.1_g000024 Rmu_sc0007842.1_g000001 Rmu_ssc0000368.1_g000067
rosa_roxburghii	Rroxscaffold_2G00098580 Rroxscaffold_5G00343750
rosa_rugosa	Rorug02G0303100 Rorug02G0303200 Rorug02G0408100 Rorug05G0283200 Rorug05G0283300
rosa_samantha	Rh2AG466500 Rh2BG479600 Rh2CG453000 Rh2DG488400 Rh3DG124100 Rh4AG089800 Rh4AG118200 Rh4AG189300 Rh4CG097800 Rh5DG503900 Rh6CG162100 Rh6DG153700 Rh7BG309800 Rh7DG365700
rosa_wichuraiana	Rw2G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	397
AccB1I	GGYRCC	1 cut(s)	397
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	2 cut(s)	37, 290
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	265
AgsI	TTSAA	3 cut(s)	22, 35, 290
AjiI	CACGTC	1 cut(s)	427
AjnI	CCWGG	1 cut(s)	523
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	2 cut(s)	123, 505
ApoI	RAATTY	2 cut(s)	37, 290
Asp700I	GAANNNNTTC	1 cut(s)	200
Asp718I	GGTACC	1 cut(s)	397
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	508
AvaII	GGWCC	1 cut(s)	140
AxyI	CCTNAGG	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	397
BbvI	GCAGC	2 cut(s)	110, 517
BciT130I	CCWGG	1 cut(s)	525
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	109
BisI	GCNGC	2 cut(s)	124, 506
BlsI	GCNGC	2 cut(s)	125, 507
Bme1390I	CCNGG	1 cut(s)	525
Bme18I	GGWCC	1 cut(s)	140
BmgBI	CACGTC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	2 cut(s)	399, 529
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	1 cut(s)	180
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpuEI	CTTGAG	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse21I	CCTNAGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	525
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	177
BseRI	GAGGAG	2 cut(s)	450, 460
BseXI	GCAGC	2 cut(s)	110, 517
BseYI	CCCAGC	1 cut(s)	519
BsgI	GTGCAG	1 cut(s)	461
BshFI	GGCC	1 cut(s)	297
BshNI	GGYRCC	1 cut(s)	397
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	51, 97
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	399, 529
BspT107I	GGYRCC	1 cut(s)	397
BsrDI	GCAATG	1 cut(s)	236
BssMI	GATC	2 cut(s)	51, 97
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	5 cut(s)	113, 261, 386, 408, 536
Bst6I	CTCTTC	1 cut(s)	468
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	3 cut(s)	117, 132, 186
BstKTI	GATC	2 cut(s)	54, 100
BstMBI	GATC	2 cut(s)	51, 97
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstNI	CCWGG	1 cut(s)	525
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	523
BstSFI	CTRYAG	1 cut(s)	109
BstV1I	GCAGC	2 cut(s)	110, 517
Bsu36I	CCTNAGG	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	297
BtrI	CACGTC	1 cut(s)	427
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	3 cut(s)	208, 254, 266
CviJI	RGCY	6 cut(s)	130, 297, 421, 508, 523, 528
CviKI_1	RGCY	6 cut(s)	130, 297, 421, 508, 523, 528
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	3 cut(s)	117, 132, 186
DpnI	GATC	2 cut(s)	53, 99
DpnII	GATC	2 cut(s)	51, 97
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	140
Eco81I	CCTNAGG	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	523
FaeI	CATG	3 cut(s)	211, 257, 269
FaiI	YATR	7 cut(s)	83, 106, 209, 255, 267, 339, 503
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	3 cut(s)	207, 253, 265
Fnu4HI	GCNGC	2 cut(s)	124, 506
Fsp4HI	GCNGC	2 cut(s)	124, 506
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	2 cut(s)	124, 506
GsaI	CCCAGC	1 cut(s)	523
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	1 cut(s)	298
Hin1II	CATG	3 cut(s)	211, 257, 269
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	3 cut(s)	30, 60, 532
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	2 cut(s)	356, 445
HpyCH4III	ACNGT	5 cut(s)	113, 261, 386, 408, 536
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	4 cut(s)	14, 126, 442, 505
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpyF3I	CTNAG	3 cut(s)	117, 132, 186
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	3 cut(s)	211, 257, 269
KpnI	GGTACC	1 cut(s)	401
Kzo9I	GATC	2 cut(s)	51, 97
LmnI	GCTCC	1 cut(s)	533
LpnPI	CCDG	6 cut(s)	156, 198, 311, 510, 533, 537
Lsp1109I	GCAGC	2 cut(s)	110, 517
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	3 cut(s)	4, 160, 261
MalI	GATC	2 cut(s)	53, 99
MboI	GATC	2 cut(s)	51, 97
MboII	GAAGA	4 cut(s)	61, 92, 485, 509
MluCI	AATT	2 cut(s)	37, 290
MmeI	TCCRAC	1 cut(s)	555
MnlI	CCTC	7 cut(s)	166, 327, 428, 438, 441, 469, 557
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	1 cut(s)	577
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	1 cut(s)	525
MvaI	CCWGG	1 cut(s)	525
MwoI	GCNNNNNNNGC	1 cut(s)	250
NdeII	GATC	2 cut(s)	51, 97
NlaIII	CATG	3 cut(s)	211, 257, 269
NlaIV	GGNNCC	2 cut(s)	399, 529
NmuCI	GTSAC	1 cut(s)	160
NspI	RCATGY	1 cut(s)	269
PciI	ACATGT	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	200
PflFI	GACNNNGTC	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	125, 507
PscI	ACATGT	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	523
PspFI	CCCAGC	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	2 cut(s)	399, 529
PspPI	GGNCC	1 cut(s)	140
PsyI	GACNNNGTC	1 cut(s)	77
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	577
SatI	GCNGC	2 cut(s)	124, 506
Sau3AI	GATC	2 cut(s)	51, 97
Sau96I	GGNCC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	525
SetI	ASST	5 cut(s)	138, 331, 399, 429, 569
SfaNI	GCATC	1 cut(s)	180
SfcI	CTRYAG	1 cut(s)	109
SinI	GGWCC	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	2 cut(s)	37, 290
SspI	AATATT	1 cut(s)	168
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	523
TaaI	ACNGT	5 cut(s)	113, 261, 386, 408, 536
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	1 cut(s)	423
TaqII	GACCGA	1 cut(s)	44
TasI	AATT	2 cut(s)	37, 290
Tru1I	TTAA	1 cut(s)	577
Tru9I	TTAA	1 cut(s)	577
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	2 cut(s)	123, 505
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	118
Tth111I	GACNNNGTC	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	140
XapI	RAATTY	2 cut(s)	37, 290
XceI	RCATGY	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.