Rh4AG189300

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002322
Physical Location & Seq
Forward (+)
46906996 .. 46908447
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG189300.1

Sequence Viewer

Length: 393 bp
ATGCAAAGATTTTCACCGACGGCTGTGCTTATTATCTTGGCTTGGTACTATTTCAAGGGTTTTTTGTATAAGAAAACGTCTTCTTCATCTACAGTTGGTGTCTCTTATTCAAATCTCATTGCTTCTGGATCTGGGGGTTTACAGTTTAGAGTCTCGGAAATGGTAACATATGCAGATTTGAAGTTTCTGATTGAAAATTTGGACGAGAAGATCGGTCAGAATAAGAAATGGGACAATGTCATAGAGAAAGGAAATGAGCTTCTATACTACAGTGCTAAGTGCTGCAAGCCTAAGGTTGGTCCTGTGAAATACTTGAGTGTGACAATATTTGAGGACTGCTCTCCTGAGATGCTGAGAGACTTCTACATGGATAATGATTACAGAAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

130

Amino Acids

14.96

Weight (kDa)

8.68

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 136
AcsI RAATTY 1 cut(s) 196
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 4 cut(s) 55, 111, 181, 194
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
Alw26I GTCTC 3 cut(s) 106, 157, 351
AlwI GGATC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 282
ApoI RAATTY 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 6
AvaII GGWCC 1 cut(s) 299
AxyI CCTNAGG 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 269
BceAI ACGGC 1 cut(s) 36
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BcoDI GTCTC 3 cut(s) 106, 157, 351
BfmI CTRYAG 2 cut(s) 90, 268
BisI GCNGC 1 cut(s) 283
BlsI GCNGC 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BmsI GCATC 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 323, 355
BpuEI CTTGAG 1 cut(s) 334
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse21I CCTNAGG 1 cut(s) 291
Bse3DI GCAATG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 2 cut(s) 336, 344
BseXI GCAGC 1 cut(s) 269
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 3 cut(s) 106, 157, 351
BsmFI GGGAC 1 cut(s) 245
Bsp143I GATC 2 cut(s) 128, 210
BspCNI CTCAG 2 cut(s) 337, 345
BspPI GGATC 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 117
BssMI GATC 2 cut(s) 128, 210
Bst4CI ACNGT 3 cut(s) 94, 144, 272
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 4 cut(s) 276, 291, 345, 353
BstKTI GATC 2 cut(s) 131, 213
BstMAI GTCTC 3 cut(s) 106, 157, 351
BstMBI GATC 2 cut(s) 128, 210
BstSFI CTRYAG 2 cut(s) 90, 268
BstV1I GCAGC 1 cut(s) 269
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
Bsu36I CCTNAGG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 277
Cac8I GCNNGC 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 299
Csp6I GTAC 1 cut(s) 46
CviAII CATG 1 cut(s) 367
CviJI RGCY 4 cut(s) 23, 41, 259, 289
CviKI_1 RGCY 4 cut(s) 23, 41, 259, 289
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 4 cut(s) 276, 291, 345, 353
DpnI GATC 2 cut(s) 130, 212
DpnII GATC 2 cut(s) 128, 210
Eco47I GGWCC 1 cut(s) 299
Eco81I CCTNAGG 1 cut(s) 291
FaeI CATG 1 cut(s) 370
FaiI YATR 6 cut(s) 69, 169, 171, 242, 265, 368
FaqI GGGAC 1 cut(s) 245
FatI CATG 1 cut(s) 366
FauNDI CATATG 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 283
Fsp4HI GCNGC 1 cut(s) 283
GluI GCNGC 1 cut(s) 283
Hin1II CATG 1 cut(s) 370
HinfI GANTC 1 cut(s) 150
HphI GGTGA 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 140
Hpy188I TCNGA 3 cut(s) 157, 189, 219
Hpy188III TCNNGA 2 cut(s) 126, 344
Hpy8I GTNNAC 1 cut(s) 140
Hpy99I CGWCG 1 cut(s) 22
HpyCH4III ACNGT 3 cut(s) 94, 144, 272
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 3 cut(s) 4, 173, 285
HpyF3I CTNAG 4 cut(s) 276, 291, 345, 353
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 1 cut(s) 370
Kzo9I GATC 2 cut(s) 128, 210
LpnPI CCDG 4 cut(s) 111, 117, 315, 357
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 1 cut(s) 339
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 2 cut(s) 163, 319
MalI GATC 2 cut(s) 130, 212
MboI GATC 2 cut(s) 128, 210
MboII GAAGA 3 cut(s) 72, 75, 220
MflI RGATCY 1 cut(s) 128
MluCI AATT 1 cut(s) 196
MlyI GAGTC 1 cut(s) 159
MnlI CCTC 1 cut(s) 325
NdeI CATATG 1 cut(s) 169
NdeII GATC 2 cut(s) 128, 210
NlaIII CATG 1 cut(s) 370
NmuCI GTSAC 1 cut(s) 319
PflFI GACNNNGTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 284
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PspPI GGNCC 1 cut(s) 299
PsuI RGATCY 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 236
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SatI GCNGC 1 cut(s) 283
Sau3AI GATC 2 cut(s) 128, 210
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 1 cut(s) 159
SetI ASST 3 cut(s) 80, 261, 297
SfaNI GCATC 1 cut(s) 339
SfcI CTRYAG 2 cut(s) 90, 268
SinI GGWCC 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
Sse9I AATT 1 cut(s) 196
SspI AATATT 1 cut(s) 327
TaaI ACNGT 3 cut(s) 94, 144, 272
TaiI ACGT 1 cut(s) 80
TaqII GACCGA 1 cut(s) 203
TasI AATT 1 cut(s) 196
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 1 cut(s) 282
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 75
TspRI CASTG 1 cut(s) 277
Tth111I GACNNNGTC 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 299
XapI RAATTY 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.