Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002322

Physical Location & Seq

Genomic Coordinates Reverse (-)

22819593 .. 22822010

Gene Structure 2418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG153700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGTAACAGATGCAGATTTGAAGTTTCTGATTGAAAATTTGGACGAGAAGATCGGTCAGAATAAGAAATGGGACAATGTCATAGAGAAAGGAAATGATCTTCTATACTACAGTGCTAAGTGCTGCAAGCCTAAGGTTGGTCCTGTGAAATACTTGAGTTTACATGTGGACAAAAACAATGGGGTTGAAGTTGGCCGGACAATAAAGAAGTTTCCACTGTTGACACCTAGAGAATATGTATTAGCTTGGAGATTGTGGGAAGGAAAAGATAAAACATTCTACTGTTTTGTCAAGGAATGTGAACATTCTTTGGCACCATGGCAGAAGAAGTATGTGCGTGTTGGTACTTTCAGATCTGGTTGGCGAATTAGAAAAGTACCTGGTAGAAATGACTGCGAGATCAAAATGTATCACCAAGAAGATGCTGGTTTAAACGTGGAGATGGAAAAACTGGCCTTCGCGAAGGGCATATGGAGTTACTTATGTAAGATGGATAGTGCACTACGCAAATATTCTGCAATCAGCAATGATCAATCAAGTTCTGCTACCACTGCAGTCACTTTGATAAAAAAAGGTCCCCCCTGGATTAGAGGCCACGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

200

Amino Acids

23.05

Weight (kDa)

9.39

Isoelectric Point (pI)

30.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55960 AT1G55960 AT3G13062 AT3G13062 AT3G13062
fragaria_vesca	FvH4_6g36480 FvH4_6g36480
malus_domestica	MD09G1168600.v1.1 MD10G1168000.v1.1 MD17G1158100.v1.1
prunus_persica	Prupe.3G027000_v2.0.a1
pyrus_communis	pycom09g08630 pycom17g15160
rosa_chinensis	RchiOBHm_Chr1g0356291 RchiOBHm_Chr1g0356301 RchiOBHm_Chr2g0148611
rosa_laevigata	RLG00000020355
rosa_multiflora	Rmu_sc0000048.1_g000024 Rmu_sc0007842.1_g000001 Rmu_ssc0000368.1_g000067
rosa_roxburghii	Rroxscaffold_2G00098580 Rroxscaffold_5G00343750
rosa_rugosa	Rorug02G0303100 Rorug02G0303200 Rorug02G0408100 Rorug05G0283200 Rorug05G0283300
rosa_samantha	Rh2AG466500 Rh2BG479600 Rh2CG453000 Rh2DG488400 Rh3DG124100 Rh4AG089800 Rh4AG118200 Rh4AG189300 Rh4CG097800 Rh5DG503900 Rh6CG162100 Rh6DG153700 Rh7BG309800 Rh7DG365700
rosa_wichuraiana	Rw2G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	313
AccII	CGCG	1 cut(s)	461
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	37
AfaI	GTAC	2 cut(s)	346, 378
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	163
AgsI	TTSAA	3 cut(s)	22, 35, 188
AjnI	CCWGG	2 cut(s)	379, 581
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Alw21I	GWGCWC	1 cut(s)	502
Alw44I	GTGCAC	1 cut(s)	498
AoxI	GGCC	3 cut(s)	193, 453, 592
ApaLI	GTGCAC	1 cut(s)	498
ApeKI	GCWGC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	140, 575
AsuHPI	GGTGA	1 cut(s)	404
AvaII	GGWCC	2 cut(s)	140, 575
AxyI	CCTNAGG	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	2 cut(s)	436, 484
BciT130I	CCWGG	2 cut(s)	381, 583
BclI	TGATCA	1 cut(s)	529
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	2 cut(s)	109, 552
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
Bme1390I	CCNGG	2 cut(s)	381, 583
Bme18I	GGWCC	2 cut(s)	140, 575
BmgT120I	GGNCC	2 cut(s)	140, 575
BmiI	GGNNCC	2 cut(s)	315, 577
BmrFI	CCNGG	2 cut(s)	381, 583
BmsI	GCATC	1 cut(s)	412
BpuEI	CTTGAG	1 cut(s)	175
BsaJI	CCNNGG	3 cut(s)	317, 581, 595
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	456
Bse21I	CCTNAGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	532
BseBI	CCWGG	2 cut(s)	381, 583
BseDI	CCNNGG	3 cut(s)	317, 581, 595
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	532
BseNI	ACTGG	1 cut(s)	456
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	461
BshFI	GGCC	3 cut(s)	195, 455, 594
BshNI	GGYRCC	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	502
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	2 cut(s)	86, 561
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmFI	GGGAC	2 cut(s)	86, 561
BsnI	GGCC	3 cut(s)	195, 455, 594
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	5 cut(s)	51, 97, 353, 399, 529
Bsp19I	CCATGG	1 cut(s)	317
Bsp68I	TCGCGA	1 cut(s)	461
BspANI	GGCC	3 cut(s)	195, 455, 594
BspFNI	CGCG	1 cut(s)	461
BspLI	GGNNCC	2 cut(s)	315, 577
BspMAI	CTGCAG	1 cut(s)	556
BspT107I	GGYRCC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	456
BssECI	CCNNGG	3 cut(s)	317, 581, 595
BssMI	GATC	5 cut(s)	51, 97, 353, 399, 529
BssT1I	CCWWGG	1 cut(s)	317
Bst2UI	CCWGG	2 cut(s)	381, 583
Bst4CI	ACNGT	3 cut(s)	113, 219, 284
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	117, 132
BstDSI	CCRYGG	2 cut(s)	317, 595
BstFNI	CGCG	1 cut(s)	461
BstKTI	GATC	5 cut(s)	54, 100, 356, 402, 532
BstMBI	GATC	5 cut(s)	51, 97, 353, 399, 529
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNI	CCWGG	2 cut(s)	381, 583
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	379, 581
BstSFI	CTRYAG	2 cut(s)	109, 552
BstSLI	GKGCMC	1 cut(s)	502
BstUI	CGCG	1 cut(s)	461
BstV1I	GCAGC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
Bsu36I	CCTNAGG	1 cut(s)	132
BsuRI	GGCC	3 cut(s)	195, 455, 594
BtgI	CCRYGG	2 cut(s)	317, 595
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	3 cut(s)	118, 215, 549
BtuMI	TCGCGA	1 cut(s)	461
Cac8I	GCNNGC	1 cut(s)	128
Cfr13I	GGNCC	2 cut(s)	140, 575
CsiI	ACCWGGT	1 cut(s)	379
Csp6I	GTAC	2 cut(s)	345, 377
CviAII	CATG	2 cut(s)	164, 318
CviJI	RGCY	5 cut(s)	130, 195, 245, 455, 594
CviKI_1	RGCY	5 cut(s)	130, 195, 245, 455, 594
CviQI	GTAC	2 cut(s)	345, 377
DdeI	CTNAG	2 cut(s)	117, 132
DpnI	GATC	5 cut(s)	53, 99, 355, 401, 531
DpnII	GATC	5 cut(s)	51, 97, 353, 399, 529
DraI	TTTAAA	1 cut(s)	432
EaeI	YGGCCR	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	317
Eco47I	GGWCC	2 cut(s)	140, 575
Eco81I	CCTNAGG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	575
EcoRII	CCWGG	2 cut(s)	379, 581
EcoT14I	CCWWGG	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	2 cut(s)	167, 321
FaiI	YATR	9 cut(s)	83, 106, 165, 237, 319, 333, 470, 472, 484
FaqI	GGGAC	2 cut(s)	86, 561
FatI	CATG	2 cut(s)	163, 317
FauNDI	CATATG	1 cut(s)	470
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	124
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	1 cut(s)	124
HaeIII	GGCC	3 cut(s)	195, 455, 594
HapII	CCGG	1 cut(s)	196
Hin1II	CATG	2 cut(s)	167, 321
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	5 cut(s)	161, 169, 222, 302, 500
Hpy188I	TCNGA	3 cut(s)	30, 60, 353
Hpy188III	TCNNGA	1 cut(s)	460
Hpy8I	GTNNAC	5 cut(s)	161, 169, 222, 302, 500
HpyAV	CCTTC	3 cut(s)	254, 457, 466
HpyCH4III	ACNGT	3 cut(s)	113, 219, 284
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	5 cut(s)	14, 126, 500, 518, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	2 cut(s)	117, 132
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	2 cut(s)	167, 321
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	5 cut(s)	51, 97, 353, 399, 529
LpnPI	CCDG	9 cut(s)	156, 209, 342, 366, 393, 411, 437, 568, 595
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	412
MabI	ACCWGGT	1 cut(s)	379
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	3 cut(s)	4, 476, 556
MalI	GATC	5 cut(s)	53, 99, 355, 401, 531
MboI	GATC	5 cut(s)	51, 97, 353, 399, 529
MboII	GAAGA	4 cut(s)	61, 92, 337, 431
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	2 cut(s)	37, 366
MnlI	CCTC	1 cut(s)	584
MseI	TTAA	1 cut(s)	431
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	2 cut(s)	381, 583
MssI	GTTTAAAC	1 cut(s)	432
MvaI	CCWGG	2 cut(s)	381, 583
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	1 cut(s)	551
NcoI	CCATGG	1 cut(s)	317
NdeI	CATATG	1 cut(s)	470
NdeII	GATC	5 cut(s)	51, 97, 353, 399, 529
NlaIII	CATG	2 cut(s)	167, 321
NlaIV	GGNNCC	2 cut(s)	315, 577
NmuCI	GTSAC	1 cut(s)	556
NruI	TCGCGA	1 cut(s)	461
NspI	RCATGY	1 cut(s)	167
PciI	ACATGT	1 cut(s)	163
PflFI	GACNNNGTC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	125
PmeI	GTTTAAAC	1 cut(s)	432
PpuMI	RGGWCCY	1 cut(s)	575
PscI	ACATGT	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	575
Psp6I	CCWGG	2 cut(s)	379, 581
PspGI	CCWGG	2 cut(s)	379, 581
PspN4I	GGNNCC	2 cut(s)	315, 577
PspPI	GGNCC	2 cut(s)	140, 575
PspPPI	RGGWCCY	1 cut(s)	575
PstI	CTGCAG	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	353
PsyI	GACNNNGTC	1 cut(s)	77
RruI	TCGCGA	1 cut(s)	461
RsaI	GTAC	2 cut(s)	346, 378
RsaNI	GTAC	2 cut(s)	345, 377
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	1 cut(s)	124
Sau3AI	GATC	5 cut(s)	51, 97, 353, 399, 529
Sau96I	GGNCC	2 cut(s)	140, 575
ScrFI	CCNGG	2 cut(s)	381, 583
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	6 cut(s)	138, 229, 247, 382, 438, 577
SexAI	ACCWGGT	1 cut(s)	379
SfaNI	GCATC	1 cut(s)	412
SfcI	CTRYAG	2 cut(s)	109, 552
SinI	GGWCC	2 cut(s)	140, 575
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	2 cut(s)	37, 366
SspI	AATATT	1 cut(s)	512
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	379, 581
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	3 cut(s)	113, 219, 284
TaiI	ACGT	1 cut(s)	438
TaqII	GACCGA	1 cut(s)	44
TasI	AATT	2 cut(s)	37, 366
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TscAI	CASTG	3 cut(s)	118, 222, 556
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	556
TspRI	CASTG	3 cut(s)	118, 222, 556
Tth111I	GACNNNGTC	1 cut(s)	77
VneI	GTGCAC	1 cut(s)	498
VpaK11BI	GGWCC	2 cut(s)	140, 575
XapI	RAATTY	1 cut(s)	37
XceI	RCATGY	1 cut(s)	167
XcmI	CCANNNNNNNNNTGG	1 cut(s)	422
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.