Rorug05G0283200

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002322
Physical Location & Seq
Reverse (-)
32428974 .. 32431366
2393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0283200.1

Sequence Viewer

Length: 1038 bp
ATGTACAGACTTGGTATTACTATCATACAATTAATATTCATTCTAAGCGTTGCTCAACGAAATTTTCAATCTAAGCTTATGAAGATGGTGAAGTACCAGCACTTGGTCTACTGTGTTCTTTTGTTCATCTCTTTGATTGATTTAAGAACGGCAGCTCGCAGTAATCCCCCTGACGATGTTTTGGAATGGGTTCAAAAAGATGATCGCCGTTTCCTGCGTGCCAATATCAGAGTTGGTGATATTAATCGAACCATTAAGTTTTACACCGAGTTTTTTGGGATGAAAGTGTTGAGCAGAAAAGATTTCCCAGAAGTAAATATCTCAAATGCAGTCATTGGGTTTGGATCTGAAGAGACTCAATTTGTTCTGGGCCTCAGCCAACACCACAGTGCAGTTGACAAATTGGAGCTCGGAACAGCCTTCAGTCATTTTGGAATTACAACCCAAGATATTTATACAATGGTTGAAAAAATTCGAGCTGCTGGTGGGGTGATCACTCGTGAACCGGGGCCAGTCGCACCTGGTGGGACTACCATCTACGCCTTTGTGAATGATCCCGATGGCTACAGTTTCGAGCTCATCCTCAGGCCGCCATCACCAGAACCACTTAACCATATGTGTCTTAATGTGGTTGATATTGATCGTTCTATTGAATTCTACGAAAAGGCTTTGGGAATGAACTTACTAGTGCCAAAGTACGACAATACTCAAGAGCAGTATACTGTAGCTATGGTGGGCTATGGATCCAACTATACTCAGACGACCGTCATCGAGCTGAAATATAACTTTAATGTGACAGAGTATACCAAAGGAAATGGATATGCACAGGTTGCTATGGGCACTGATGATGTATACAAGAGCGCAGCAGCTGTTGAACAGGCTATCCAGGAACTTGGTGGGAAAATAATTCGACCACCAGGTCCACTTCCAATTATCGGGACCAAAATCACTGCATTCCTTGATTCAGATGGCTTTGAAACAGTGTTGGTGGACAATGAAGACTATCTTAATTATCTTAAACAATTCAAGAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

345

Amino Acids

38.88

Weight (kDa)

5.53

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxalase PF00903 72 - 193 1.2e-17 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase PF00903 203 - 326 4.7e-11 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 918
AccB7I CCANNNNNTGG 1 cut(s) 103
AccI GTMKAC 4 cut(s) 108, 719, 803, 852
AciI CCGC 1 cut(s) 590
AclWI GGATC 4 cut(s) 352, 548, 738, 751
AcsI RAATTY 3 cut(s) 61, 471, 653
AcuI CTGAAG 2 cut(s) 369, 406
AdeI CACNNNGTG 1 cut(s) 524
AfaI GTAC 3 cut(s) 5, 95, 698
AfiI CCNNNNNNNGG 2 cut(s) 103, 935
AgsI TTSAA 7 cut(s) 68, 194, 467, 653, 875, 977, 1027
AhlI ACTAGT 1 cut(s) 685
AjnI CCWGG 3 cut(s) 520, 885, 916
AleI CACNNNNGTG 1 cut(s) 387
AloI GAACNNNNNNTCC 2 cut(s) 867, 899
AluBI AGCT 8 cut(s) 76, 155, 409, 479, 577, 728, 775, 869
AluI AGCT 8 cut(s) 76, 155, 409, 479, 577, 728, 775, 869
Alw21I GWGCWC 2 cut(s) 411, 579
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 4 cut(s) 352, 548, 738, 751
AlwNI CAGNNNCTG 1 cut(s) 869
AoxI GGCC 3 cut(s) 370, 509, 587
ApeKI GCWGC 4 cut(s) 152, 479, 863, 866
ApoI RAATTY 3 cut(s) 61, 471, 653
AseI ATTAAT 2 cut(s) 32, 243
Asp700I GAANNNNTTC 2 cut(s) 189, 471
AspLEI GCGC 1 cut(s) 863
AspS9I GGNCC 4 cut(s) 370, 509, 920, 939
AsuC2I CCSGG 1 cut(s) 507
AsuHPI GGTGA 4 cut(s) 100, 248, 502, 588
AvaII GGWCC 2 cut(s) 920, 939
AxyI CCTNAGG 1 cut(s) 584
BaeGI GKGCMC 1 cut(s) 842
BamHI GGATCC 1 cut(s) 743
BanII GRGCYC 2 cut(s) 411, 579
BauI CACGAG 1 cut(s) 498
BbsI GAAGAC 1 cut(s) 1005
Bbv12I GWGCWC 2 cut(s) 411, 579
BbvCI CCTCAGC 1 cut(s) 374
BbvI GCAGC 4 cut(s) 164, 466, 875, 878
BccI CCATC 5 cut(s) 79, 542, 554, 601, 962
BceAI ACGGC 2 cut(s) 165, 192
BciT130I CCWGG 3 cut(s) 522, 887, 918
BclI TGATCA 1 cut(s) 492
BcnI CCSGG 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 347
BcuI ACTAGT 1 cut(s) 685
BfaI CTAG 1 cut(s) 686
BfmI CTRYAG 2 cut(s) 565, 723
BisI GCNGC 5 cut(s) 153, 480, 590, 864, 867
BlsI GCNGC 5 cut(s) 154, 481, 591, 865, 868
Bme1390I CCNGG 4 cut(s) 507, 522, 887, 918
Bme18I GGWCC 2 cut(s) 920, 939
BmgT120I GGNCC 4 cut(s) 370, 509, 920, 939
BmiI GGNNCC 3 cut(s) 510, 745, 940
BmrFI CCNGG 4 cut(s) 507, 522, 887, 918
BoxI GACNNNNGTC 1 cut(s) 764
BpiI GAAGAC 1 cut(s) 1005
Bpu10I CCTNAGC 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 693
BpuMI CCSGG 1 cut(s) 507
BsaBI GATNNNNATC 2 cut(s) 243, 639
BsaJI CCNNGG 1 cut(s) 506
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 935
Bse1I ACTGG 1 cut(s) 512
Bse21I CCTNAGG 1 cut(s) 584
Bse8I GATNNNNATC 2 cut(s) 243, 639
BseBI CCWGG 3 cut(s) 522, 887, 918
BseDI CCNNGG 1 cut(s) 506
BseGI GGATG 2 cut(s) 285, 579
BseJI GATNNNNATC 2 cut(s) 243, 639
BseLI CCNNNNNNNGG 2 cut(s) 103, 935
BseMII CTCAG 3 cut(s) 388, 598, 770
BseNI ACTGG 1 cut(s) 512
BseSI GKGCMC 1 cut(s) 842
BseXI GCAGC 4 cut(s) 164, 466, 875, 878
BsgI GTGCAG 1 cut(s) 411
Bsh1285I CGRYCG 1 cut(s) 765
BshFI GGCC 3 cut(s) 372, 511, 589
BsiEI CGRYCG 1 cut(s) 765
BsiHKAI GWGCWC 2 cut(s) 411, 579
BsiSI CCGG 1 cut(s) 506
BslFI GGGAC 2 cut(s) 541, 952
BslI CCNNNNNNNGG 2 cut(s) 103, 935
BsmAI GTCTC 1 cut(s) 347
BsmFI GGGAC 2 cut(s) 541, 952
BsmI GAATGC 1 cut(s) 953
BsnI GGCC 3 cut(s) 372, 511, 589
Bsp1286I GDGCHC 3 cut(s) 411, 579, 842
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 6 cut(s) 202, 344, 492, 553, 640, 743
BspACI CCGC 1 cut(s) 590
BspANI GGCC 3 cut(s) 372, 511, 589
BspCNI CTCAG 3 cut(s) 387, 597, 769
BspLI GGNNCC 3 cut(s) 510, 745, 940
BspPI GGATC 4 cut(s) 352, 548, 738, 751
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 512
BssECI CCNNGG 1 cut(s) 506
BssMI GATC 6 cut(s) 202, 344, 492, 553, 640, 743
BssNAI GTATAC 3 cut(s) 720, 804, 853
BssSI CACGAG 1 cut(s) 498
Bst1107I GTATAC 3 cut(s) 720, 804, 853
Bst2BI CACGAG 1 cut(s) 498
Bst2UI CCWGG 3 cut(s) 522, 887, 918
Bst4CI ACNGT 6 cut(s) 113, 389, 569, 724, 766, 982
Bst6I CTCTTC 1 cut(s) 345
BstAPI GCANNNNNTGC 1 cut(s) 830
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 157, 219
BstDEI CTNAG 5 cut(s) 44, 72, 374, 584, 756
BstF5I GGATG 2 cut(s) 285, 579
BstHHI GCGC 1 cut(s) 863
BstKTI GATC 6 cut(s) 205, 347, 495, 556, 643, 746
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 6 cut(s) 202, 344, 492, 553, 640, 743
BstMCI CGRYCG 1 cut(s) 765
BstMWI GCNNNNNNNGC 1 cut(s) 830
BstNI CCWGG 3 cut(s) 522, 887, 918
BstPAI GACNNNNGTC 1 cut(s) 764
BstSCI CCNGG 4 cut(s) 505, 520, 885, 916
BstSFI CTRYAG 2 cut(s) 565, 723
BstSLI GKGCMC 1 cut(s) 842
BstV1I GCAGC 4 cut(s) 164, 466, 875, 878
BstV2I GAAGAC 1 cut(s) 1005
BstX2I RGATCY 2 cut(s) 344, 743
BstXI CCANNNNNNTGG 1 cut(s) 893
BstYI RGATCY 2 cut(s) 344, 743
BstZ17I GTATAC 3 cut(s) 720, 804, 853
Bsu36I CCTNAGG 1 cut(s) 584
BsuRI GGCC 3 cut(s) 372, 511, 589
BtsCI GGATG 2 cut(s) 285, 579
BtsI GCAGTG 1 cut(s) 948
BtsIMutI CAGTG 4 cut(s) 394, 840, 948, 987
Cac8I GCNNGC 2 cut(s) 157, 219
CaiI CAGNNNCTG 1 cut(s) 869
CfoI GCGC 1 cut(s) 863
Cfr13I GGNCC 4 cut(s) 370, 509, 920, 939
CsiI ACCWGGT 2 cut(s) 520, 916
Csp6I GTAC 3 cut(s) 4, 94, 697
CviQI GTAC 3 cut(s) 4, 94, 697
DdeI CTNAG 5 cut(s) 44, 72, 374, 584, 756
DpnI GATC 6 cut(s) 204, 346, 494, 555, 642, 745
DpnII GATC 6 cut(s) 202, 344, 492, 553, 640, 743
DraIII CACNNNGTG 1 cut(s) 524
DrdI GACNNNNNNGTC 1 cut(s) 918
DseDI GACNNNNNNGTC 1 cut(s) 918
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Ecl136II GAGCTC 2 cut(s) 409, 577
Eco24I GRGCYC 2 cut(s) 411, 579
Eco47I GGWCC 2 cut(s) 920, 939
Eco53kI GAGCTC 2 cut(s) 409, 577
Eco57I CTGAAG 2 cut(s) 369, 406
Eco81I CCTNAGG 1 cut(s) 584
EcoICRI GAGCTC 2 cut(s) 409, 577
EcoRI GAATTC 1 cut(s) 653
EcoRII CCWGG 3 cut(s) 520, 885, 916
EcoT38I GRGCYC 2 cut(s) 411, 579
FalI AAGNNNNNCTT 2 cut(s) 990, 1022
FaqI GGGAC 2 cut(s) 541, 952
FauNDI CATATG 1 cut(s) 615
FbaI TGATCA 1 cut(s) 492
FblI GTMKAC 4 cut(s) 108, 719, 803, 852
Fnu4HI GCNGC 5 cut(s) 153, 480, 590, 864, 867
FokI GGATG 2 cut(s) 292, 566
FriOI GRGCYC 2 cut(s) 411, 579
Fsp4HI GCNGC 5 cut(s) 153, 480, 590, 864, 867
FspBI CTAG 1 cut(s) 686
GlaI GCGC 1 cut(s) 862
GluI GCNGC 5 cut(s) 153, 480, 590, 864, 867
HaeIII GGCC 3 cut(s) 372, 511, 589
HapII CCGG 1 cut(s) 506
HhaI GCGC 1 cut(s) 863
Hin6I GCGC 1 cut(s) 861
HinP1I GCGC 1 cut(s) 861
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 2 cut(s) 355, 962
HpaII CCGG 1 cut(s) 506
HphI GGTGA 4 cut(s) 100, 248, 502, 588
Hpy166II GTNNAC 8 cut(s) 109, 397, 503, 720, 804, 853, 923, 991
Hpy188I TCNGA 5 cut(s) 230, 349, 413, 759, 967
Hpy188III TCNNGA 5 cut(s) 500, 557, 710, 937, 1027
Hpy8I GTNNAC 8 cut(s) 109, 397, 503, 720, 804, 853, 923, 991
HpyAV CCTTC 1 cut(s) 430
HpyCH4III ACNGT 6 cut(s) 113, 389, 569, 724, 766, 982
HpyCH4V TGCA 4 cut(s) 329, 392, 824, 953
HpyF10VI GCNNNNNNNGC 1 cut(s) 830
HpyF3I CTNAG 5 cut(s) 44, 72, 374, 584, 756
HspAI GCGC 1 cut(s) 861
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 6 cut(s) 202, 344, 492, 553, 640, 743
LmnI GCTCC 1 cut(s) 406
Lsp1109I GCAGC 4 cut(s) 164, 466, 875, 878
MabI ACCWGGT 2 cut(s) 520, 916
MaeI CTAG 1 cut(s) 686
MaeIII GTNAC 1 cut(s) 793
MalI GATC 6 cut(s) 204, 346, 494, 555, 642, 745
MboI GATC 6 cut(s) 202, 344, 492, 553, 640, 743
MboII GAAGA 3 cut(s) 94, 362, 1010
MflI RGATCY 2 cut(s) 344, 743
MhlI GDGCHC 3 cut(s) 411, 579, 842
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 1 cut(s) 771
MnlI CCTC 2 cut(s) 383, 593
MroXI GAANNNNTTC 2 cut(s) 189, 471
MseI TTAA 9 cut(s) 32, 143, 243, 255, 609, 624, 789, 1008, 1017
MslI CAYNNNNRTG 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 869
MspI CCGG 1 cut(s) 506
MspR9I CCNGG 4 cut(s) 507, 522, 887, 918
Mva1269I GAATGC 1 cut(s) 953
MvaI CCWGG 3 cut(s) 522, 887, 918
MwoI GCNNNNNNNGC 1 cut(s) 830
NciI CCSGG 1 cut(s) 507
NdeI CATATG 1 cut(s) 615
NdeII GATC 6 cut(s) 202, 344, 492, 553, 640, 743
NlaIV GGNNCC 3 cut(s) 510, 745, 940
NmuCI GTSAC 1 cut(s) 793
OliI CACNNNNGTG 1 cut(s) 387
PctI GAATGC 1 cut(s) 953
PdmI GAANNNNTTC 2 cut(s) 189, 471
PfeI GAWTC 1 cut(s) 962
PflMI CCANNNNNTGG 1 cut(s) 103
PfoI TCCNGGA 1 cut(s) 885
PkrI GCNGC 5 cut(s) 154, 481, 591, 865, 868
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PshAI GACNNNNGTC 1 cut(s) 764
PshBI ATTAAT 2 cut(s) 32, 243
Psp124BI GAGCTC 2 cut(s) 411, 579
Psp6I CCWGG 3 cut(s) 520, 885, 916
PspGI CCWGG 3 cut(s) 520, 885, 916
PspN4I GGNNCC 3 cut(s) 510, 745, 940
PspPI GGNCC 4 cut(s) 370, 509, 920, 939
PstNI CAGNNNCTG 1 cut(s) 869
PsuI RGATCY 2 cut(s) 344, 743
PvuII CAGCTG 1 cut(s) 869
RsaI GTAC 3 cut(s) 5, 95, 698
RsaNI GTAC 3 cut(s) 4, 94, 697
RseI CAYNNNNRTG 1 cut(s) 387
SacI GAGCTC 2 cut(s) 411, 579
SaqAI TTAA 9 cut(s) 32, 143, 243, 255, 609, 624, 789, 1008, 1017
SatI GCNGC 5 cut(s) 153, 480, 590, 864, 867
Sau3AI GATC 6 cut(s) 202, 344, 492, 553, 640, 743
Sau96I GGNCC 4 cut(s) 370, 509, 920, 939
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 4 cut(s) 507, 522, 887, 918
SduI GDGCHC 3 cut(s) 411, 579, 842
SexAI ACCWGGT 2 cut(s) 520, 916
SfcI CTRYAG 2 cut(s) 565, 723
SinI GGWCC 2 cut(s) 920, 939
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 708
SmoI CTYRAG 1 cut(s) 708
SpeI ACTAGT 1 cut(s) 685
SsiI CCGC 1 cut(s) 590
SspI AATATT 1 cut(s) 36
SspMI CTAG 1 cut(s) 686
SstI GAGCTC 2 cut(s) 411, 579
StyD4I CCNGG 4 cut(s) 505, 520, 885, 916
TaaI ACNGT 6 cut(s) 113, 389, 569, 724, 766, 982
TaqI TCGA 5 cut(s) 247, 475, 573, 771, 910
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 592
TfiI GAWTC 1 cut(s) 962
Tru1I TTAA 9 cut(s) 32, 143, 243, 255, 609, 624, 789, 1008, 1017
Tru9I TTAA 9 cut(s) 32, 143, 243, 255, 609, 624, 789, 1008, 1017
TscAI CASTG 4 cut(s) 394, 847, 955, 987
TseFI GTSAC 1 cut(s) 793
TseI GCWGC 4 cut(s) 152, 479, 863, 866
Tsp45I GTSAC 1 cut(s) 793
TspDTI ATGAA 6 cut(s) 28, 95, 115, 296, 692, 1011
TspRI CASTG 4 cut(s) 394, 847, 955, 987
Van91I CCANNNNNTGG 1 cut(s) 103
VpaK11BI GGWCC 2 cut(s) 920, 939
VspI ATTAAT 2 cut(s) 32, 243
XapI RAATTY 3 cut(s) 61, 471, 653
XcmI CCANNNNNNNNNTGG 1 cut(s) 893
XmiI GTMKAC 4 cut(s) 108, 719, 803, 852
XmnI GAANNNNTTC 2 cut(s) 189, 471
XspI CTAG 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.