Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002322

Physical Location & Seq

Genomic Coordinates Forward (+)

49040645 .. 49047196

Gene Structure 6552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG365700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTCAGAGCCATCAGCAGAACTAATGCATCATGTTGGACATAAGTTCCATGAGGTATTTCAGATAAGACAAGGATGCTACGCGGATCTTCCTGCTGCAAAGATCTCAGAAATGATGAAATCCAATAGTTTAGATTGTTTCAAGGATTTTTTGTATAAGAAAACGTCTTCTTCATCTACAGTTGGTGTCTCTGATTCAAATCCCATTGCTTCTGGATCTGGGGGTTCACAGTTTAGAGTCTCGGAAATGGTAACAGATGCAGATTTGAAGTTTCTGATTGAAAATTTGGACGAGAAGATCGGTCAGAATAAGAAATGGGACAATGTCATAGAGAAAGGAAATGATCTTCTATACTACAGTGCTAAGTGCTGCAAGCCTAAGGTTGGTCCTGTGAAATACTTGATTGGCCGGACAATAAAGAAGTTTCCACTGTTGACACCTAGAGAATATGTATTAGCTTGGAGATTGTGGGAAGGAAAAGATAAAACATTCTACTGTTTTGTCAAGAAGAAGTATGTGCGTGTTGGTACTTTCAGATCTGGTTGGCGAATTATAAAAGTACCTGGTAGAAATGCCTGCGAGATCAAAATGTATCACCAAGAAGATGCTGGTTTAAACGTGGAGATGGCAAAACTGGCCTTCGCGAAGGGCATATGGAGTTACGTATGTAAGATGGATAGTGCACTACGCAAATATTCTGCAATTAGCAATGATCAATCAAGTTCTGCTACCACTGCAATCACTTTGATAAAAAAGGTCCCCCCTGGATTAGAGGCGACGGATAGCAATGGAGCAACCTCTGTAGAACCCAATGTTCAGAGTCTTAAATTGTTGTTGCAGTTGGACCACTTGCAGCATATTATCAAGTACCTCTACGTCATATATTATTGGTTTATGATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

301

Amino Acids

34.21

Weight (kDa)

9.27

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55960 AT1G55960 AT3G13062 AT3G13062 AT3G13062
fragaria_vesca	FvH4_6g36480 FvH4_6g36480
malus_domestica	MD09G1168600.v1.1 MD10G1168000.v1.1 MD17G1158100.v1.1
prunus_persica	Prupe.3G027000_v2.0.a1
pyrus_communis	pycom09g08630 pycom17g15160
rosa_chinensis	RchiOBHm_Chr1g0356291 RchiOBHm_Chr1g0356301 RchiOBHm_Chr2g0148611
rosa_laevigata	RLG00000020355
rosa_multiflora	Rmu_sc0000048.1_g000024 Rmu_sc0007842.1_g000001 Rmu_ssc0000368.1_g000067
rosa_roxburghii	Rroxscaffold_2G00098580 Rroxscaffold_5G00343750
rosa_rugosa	Rorug02G0303100 Rorug02G0303200 Rorug02G0408100 Rorug05G0283200 Rorug05G0283300
rosa_samantha	Rh2AG466500 Rh2BG479600 Rh2CG453000 Rh2DG488400 Rh3DG124100 Rh4AG089800 Rh4AG118200 Rh4AG189300 Rh4CG097800 Rh5DG503900 Rh6CG162100 Rh6DG153700 Rh7BG309800 Rh7DG365700
rosa_wichuraiana	Rw2G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AccII	CGCG	2 cut(s)	83, 644
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	2 cut(s)	93, 223
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	283
AfaI	GTAC	3 cut(s)	529, 561, 869
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	4 cut(s)	142, 198, 268, 281
AjnI	CCWGG	2 cut(s)	562, 763
AluBI	AGCT	1 cut(s)	458
AluI	AGCT	1 cut(s)	458
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	2 cut(s)	193, 244
Alw44I	GTGCAC	1 cut(s)	681
AlwI	GGATC	2 cut(s)	93, 223
AoxI	GGCC	2 cut(s)	406, 636
ApaLI	GTGCAC	1 cut(s)	681
ApeKI	GCWGC	3 cut(s)	95, 369, 853
ApoI	RAATTY	1 cut(s)	283
AspS9I	GGNCC	3 cut(s)	386, 757, 844
AsuHPI	GGTGA	1 cut(s)	587
AvaII	GGWCC	3 cut(s)	386, 757, 844
AxyI	CCTNAGG	1 cut(s)	378
BaeGI	GKGCMC	1 cut(s)	685
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	685
BbvI	GCAGC	3 cut(s)	82, 356, 865
BccI	CCATC	3 cut(s)	19, 619, 667
BciT130I	CCWGG	2 cut(s)	564, 765
BclI	TGATCA	1 cut(s)	712
BcoDI	GTCTC	2 cut(s)	193, 244
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	3 cut(s)	177, 355, 801
BglII	AGATCT	2 cut(s)	102, 536
BisI	GCNGC	3 cut(s)	96, 370, 854
BlsI	GCNGC	3 cut(s)	97, 371, 855
Bme1390I	CCNGG	2 cut(s)	564, 765
Bme18I	GGWCC	3 cut(s)	386, 757, 844
BmgT120I	GGNCC	3 cut(s)	386, 757, 844
BmiI	GGNNCC	1 cut(s)	759
BmrFI	CCNGG	2 cut(s)	564, 765
BmsI	GCATC	4 cut(s)	37, 65, 247, 595
BpiI	GAAGAC	1 cut(s)	159
BsaAI	YACGTR	1 cut(s)	664
BsaBI	GATNNNNATC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	763
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse1I	ACTGG	1 cut(s)	639
Bse21I	CCTNAGG	1 cut(s)	378
Bse3DI	GCAATG	3 cut(s)	204, 715, 793
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	564, 765
BseDI	CCNNGG	1 cut(s)	763
BseGI	GGATG	1 cut(s)	80
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	3 cut(s)	204, 715, 793
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	639
BseSI	GKGCMC	1 cut(s)	685
BseXI	GCAGC	3 cut(s)	82, 356, 865
Bsh1236I	CGCG	2 cut(s)	83, 644
BshFI	GGCC	2 cut(s)	408, 638
BsiHKAI	GWGCWC	1 cut(s)	685
BsiSI	CCGG	1 cut(s)	409
BslFI	GGGAC	2 cut(s)	332, 743
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	2 cut(s)	193, 244
BsmFI	GGGAC	2 cut(s)	332, 743
BsnI	GGCC	2 cut(s)	408, 638
Bsp1286I	GDGCHC	1 cut(s)	685
Bsp143I	GATC	8 cut(s)	85, 102, 215, 297, 343, 536, 582, 712
Bsp68I	TCGCGA	1 cut(s)	644
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	2 cut(s)	408, 638
BspCNI	CTCAG	1 cut(s)	119
BspFNI	CGCG	2 cut(s)	83, 644
BspLI	GGNNCC	1 cut(s)	759
BspPI	GGATC	2 cut(s)	93, 223
BsrDI	GCAATG	3 cut(s)	204, 715, 793
BsrI	ACTGG	1 cut(s)	639
BssECI	CCNNGG	1 cut(s)	763
BssMI	GATC	8 cut(s)	85, 102, 215, 297, 343, 536, 582, 712
Bst2UI	CCWGG	2 cut(s)	564, 765
Bst4CI	ACNGT	5 cut(s)	181, 231, 359, 432, 497
BstBAI	YACGTR	1 cut(s)	664
BstC8I	GCNNGC	2 cut(s)	374, 577
BstDEI	CTNAG	3 cut(s)	106, 363, 378
BstF5I	GGATG	1 cut(s)	80
BstFNI	CGCG	2 cut(s)	83, 644
BstKTI	GATC	8 cut(s)	88, 105, 218, 300, 346, 539, 585, 715
BstMAI	GTCTC	2 cut(s)	193, 244
BstMBI	GATC	8 cut(s)	85, 102, 215, 297, 343, 536, 582, 712
BstMWI	GCNNNNNNNGC	2 cut(s)	635, 734
BstNI	CCWGG	2 cut(s)	564, 765
BstSCI	CCNGG	2 cut(s)	562, 763
BstSFI	CTRYAG	3 cut(s)	177, 355, 801
BstSLI	GKGCMC	1 cut(s)	685
BstSNI	TACGTA	1 cut(s)	664
BstUI	CGCG	2 cut(s)	83, 644
BstV1I	GCAGC	3 cut(s)	82, 356, 865
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	4 cut(s)	85, 102, 215, 536
BstYI	RGATCY	4 cut(s)	85, 102, 215, 536
Bsu36I	CCTNAGG	1 cut(s)	378
BsuRI	GGCC	2 cut(s)	408, 638
BtsCI	GGATG	1 cut(s)	80
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	3 cut(s)	364, 428, 732
BtuMI	TCGCGA	1 cut(s)	644
Cac8I	GCNNGC	2 cut(s)	374, 577
Cfr13I	GGNCC	3 cut(s)	386, 757, 844
CsiI	ACCWGGT	1 cut(s)	562
Csp6I	GTAC	3 cut(s)	528, 560, 868
CviAII	CATG	2 cut(s)	32, 50
CviJI	RGCY	5 cut(s)	10, 376, 408, 458, 638
CviKI_1	RGCY	5 cut(s)	10, 376, 408, 458, 638
CviQI	GTAC	3 cut(s)	528, 560, 868
DdeI	CTNAG	3 cut(s)	106, 363, 378
DpnI	GATC	8 cut(s)	87, 104, 217, 299, 345, 538, 584, 714
DpnII	GATC	8 cut(s)	85, 102, 215, 297, 343, 536, 582, 712
DraI	TTTAAA	1 cut(s)	615
EaeI	YGGCCR	1 cut(s)	406
Eco105I	TACGTA	1 cut(s)	664
Eco47I	GGWCC	3 cut(s)	386, 757, 844
Eco81I	CCTNAGG	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	757
EcoRII	CCWGG	2 cut(s)	562, 763
EcoT22I	ATGCAT	1 cut(s)	30
FaeI	CATG	2 cut(s)	35, 53
FaqI	GGGAC	2 cut(s)	332, 743
FatI	CATG	2 cut(s)	31, 49
FauNDI	CATATG	1 cut(s)	653
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	3 cut(s)	96, 370, 854
FokI	GGATG	1 cut(s)	87
Fsp4HI	GCNGC	3 cut(s)	96, 370, 854
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	3 cut(s)	96, 370, 854
HaeIII	GGCC	2 cut(s)	408, 638
HapII	CCGG	1 cut(s)	409
Hin1II	CATG	2 cut(s)	35, 53
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HinfI	GANTC	3 cut(s)	194, 237, 820
HpaII	CCGG	1 cut(s)	409
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	3 cut(s)	227, 435, 683
Hpy188I	TCNGA	9 cut(s)	7, 63, 109, 193, 244, 276, 306, 536, 819
Hpy188III	TCNNGA	3 cut(s)	213, 505, 643
Hpy8I	GTNNAC	3 cut(s)	227, 435, 683
Hpy99I	CGWCG	1 cut(s)	781
HpyAV	CCTTC	3 cut(s)	467, 640, 649
HpyCH4III	ACNGT	5 cut(s)	181, 231, 359, 432, 497
HpyCH4IV	ACGT	4 cut(s)	164, 618, 663, 876
HpyCH4V	TGCA	9 cut(s)	28, 98, 260, 372, 683, 701, 737, 838, 853
HpyF10VI	GCNNNNNNNGC	2 cut(s)	635, 734
HpyF3I	CTNAG	3 cut(s)	106, 363, 378
HpySE526I	ACGT	4 cut(s)	164, 618, 663, 876
Hsp92II	CATG	2 cut(s)	35, 53
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	8 cut(s)	85, 102, 215, 297, 343, 536, 582, 712
LmnI	GCTCC	1 cut(s)	791
Lsp1109I	GCAGC	3 cut(s)	82, 356, 865
LweI	GCATC	4 cut(s)	37, 65, 247, 595
MabI	ACCWGGT	1 cut(s)	562
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	4 cut(s)	164, 618, 663, 876
MaeIII	GTNAC	2 cut(s)	250, 659
MalI	GATC	8 cut(s)	87, 104, 217, 299, 345, 538, 584, 714
MboI	GATC	8 cut(s)	85, 102, 215, 297, 343, 536, 582, 712
MboII	GAAGA	7 cut(s)	80, 159, 162, 307, 338, 520, 614
MflI	RGATCY	4 cut(s)	85, 102, 215, 536
MhlI	GDGCHC	1 cut(s)	685
MluCI	AATT	4 cut(s)	283, 549, 702, 827
MlyI	GAGTC	2 cut(s)	246, 829
MmeI	TCCRAC	2 cut(s)	16, 822
MnlI	CCTC	4 cut(s)	46, 766, 808, 881
Mph1103I	ATGCAT	1 cut(s)	30
MseI	TTAA	2 cut(s)	614, 825
MspI	CCGG	1 cut(s)	409
MspR9I	CCNGG	2 cut(s)	564, 765
MssI	GTTTAAAC	1 cut(s)	615
MvaI	CCWGG	2 cut(s)	564, 765
MvnI	CGCG	2 cut(s)	83, 644
MwoI	GCNNNNNNNGC	2 cut(s)	635, 734
NdeI	CATATG	1 cut(s)	653
NdeII	GATC	8 cut(s)	85, 102, 215, 297, 343, 536, 582, 712
NlaIII	CATG	2 cut(s)	35, 53
NlaIV	GGNNCC	1 cut(s)	759
NruI	TCGCGA	1 cut(s)	644
NsiI	ATGCAT	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	194
PflFI	GACNNNGTC	1 cut(s)	323
PkrI	GCNGC	3 cut(s)	97, 371, 855
PleI	GAGTC	2 cut(s)	245, 828
PmeI	GTTTAAAC	1 cut(s)	615
PpsI	GAGTC	2 cut(s)	245, 828
Ppu21I	YACGTR	1 cut(s)	664
PpuMI	RGGWCCY	1 cut(s)	757
PsiI	TTATAA	1 cut(s)	554
Psp5II	RGGWCCY	1 cut(s)	757
Psp6I	CCWGG	2 cut(s)	562, 763
PspGI	CCWGG	2 cut(s)	562, 763
PspN4I	GGNNCC	1 cut(s)	759
PspPI	GGNCC	3 cut(s)	386, 757, 844
PspPPI	RGGWCCY	1 cut(s)	757
PsuI	RGATCY	4 cut(s)	85, 102, 215, 536
PsyI	GACNNNGTC	1 cut(s)	323
RruI	TCGCGA	1 cut(s)	644
RsaI	GTAC	3 cut(s)	529, 561, 869
RsaNI	GTAC	3 cut(s)	528, 560, 868
SaqAI	TTAA	2 cut(s)	614, 825
SatI	GCNGC	3 cut(s)	96, 370, 854
Sau3AI	GATC	8 cut(s)	85, 102, 215, 297, 343, 536, 582, 712
Sau96I	GGNCC	3 cut(s)	386, 757, 844
SchI	GAGTC	2 cut(s)	246, 829
ScrFI	CCNGG	2 cut(s)	564, 765
SduI	GDGCHC	1 cut(s)	685
SexAI	ACCWGGT	1 cut(s)	562
SfaNI	GCATC	4 cut(s)	37, 65, 247, 595
SfcI	CTRYAG	3 cut(s)	177, 355, 801
SinI	GGWCC	3 cut(s)	386, 757, 844
SnaBI	TACGTA	1 cut(s)	664
Sse9I	AATT	4 cut(s)	283, 549, 702, 827
SsiI	CCGC	1 cut(s)	83
SspI	AATATT	1 cut(s)	695
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	562, 763
TaaI	ACNGT	5 cut(s)	181, 231, 359, 432, 497
TaiI	ACGT	4 cut(s)	167, 621, 666, 879
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	4 cut(s)	283, 549, 702, 827
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	614, 825
Tru9I	TTAA	2 cut(s)	614, 825
TscAI	CASTG	3 cut(s)	364, 435, 739
TseI	GCWGC	3 cut(s)	95, 369, 853
TspDTI	ATGAA	2 cut(s)	131, 162
TspGWI	ACGGA	1 cut(s)	794
TspRI	CASTG	3 cut(s)	364, 435, 739
Tth111I	GACNNNGTC	1 cut(s)	323
VneI	GTGCAC	1 cut(s)	681
VpaK11BI	GGWCC	3 cut(s)	386, 757, 844
XapI	RAATTY	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	605
XspI	CTAG	1 cut(s)	441
Zsp2I	ATGCAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.