Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002322

Physical Location & Seq

Genomic Coordinates Reverse (-)

21714446 .. 21718915

Gene Structure 4470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG162100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCTGATTGAGCATGAACAGTTACATGTGGACAAAAACAATGGGGTTGAAGTTGGCCGGACAATAAAGAAGTTTCCACTGTTGACACCTAGAGAATATGTATTAGCTTGGAGATTGTGGGAAGGAAAAGATAAAACATTCTACTGTTTTGTCAAGGAATGTGAACATTCTTTGGCACCATGGCAGAAGAAGTATGTGCGTGTTGGTACTTTCAGATCTGGTTGGCGAATTAGAAAAGTACCTGGTAGAAATGACTGCGAGATCAAAATGTATCACCAAGAAGATGCTGGTTTAAACGTGGAGATGGAAAAACTGGCCTTCGCGAAGGGCATATGGAGTTACTTATGTAAGATGGATAGTGCACTACGCAAATATTCTGCAATCAGCAATGATCAATCAAGTTCTGCTACCACTGCAGTCACTTTGATAAAAAAAGGTCCCCCCTGGATTAGAGGCCACGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

154

Amino Acids

17.88

Weight (kDa)

9.47

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55960 AT1G55960 AT3G13062 AT3G13062 AT3G13062
fragaria_vesca	FvH4_6g36480 FvH4_6g36480
malus_domestica	MD09G1168600.v1.1 MD10G1168000.v1.1 MD17G1158100.v1.1
prunus_persica	Prupe.3G027000_v2.0.a1
pyrus_communis	pycom09g08630 pycom17g15160
rosa_chinensis	RchiOBHm_Chr1g0356291 RchiOBHm_Chr1g0356301 RchiOBHm_Chr2g0148611
rosa_laevigata	RLG00000020355
rosa_multiflora	Rmu_sc0000048.1_g000024 Rmu_sc0007842.1_g000001 Rmu_ssc0000368.1_g000067
rosa_roxburghii	Rroxscaffold_2G00098580 Rroxscaffold_5G00343750
rosa_rugosa	Rorug02G0303100 Rorug02G0303200 Rorug02G0408100 Rorug05G0283200 Rorug05G0283300
rosa_samantha	Rh2AG466500 Rh2BG479600 Rh2CG453000 Rh2DG488400 Rh3DG124100 Rh4AG089800 Rh4AG118200 Rh4AG189300 Rh4CG097800 Rh5DG503900 Rh6CG162100 Rh6DG153700 Rh7BG309800 Rh7DG365700
rosa_wichuraiana	Rw2G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	175
AccII	CGCG	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	55
AfaI	GTAC	2 cut(s)	208, 240
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	50
AjnI	CCWGG	2 cut(s)	241, 443
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw21I	GWGCWC	1 cut(s)	364
Alw44I	GTGCAC	1 cut(s)	360
AoxI	GGCC	3 cut(s)	55, 315, 454
ApaLI	GTGCAC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	437
BaeGI	GKGCMC	1 cut(s)	364
BanI	GGYRCC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	364
BccI	CCATC	2 cut(s)	298, 346
BciT130I	CCWGG	2 cut(s)	243, 445
BclI	TGATCA	1 cut(s)	391
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	414
BglII	AGATCT	1 cut(s)	215
Bme1390I	CCNGG	2 cut(s)	243, 445
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	2 cut(s)	177, 439
BmrFI	CCNGG	2 cut(s)	243, 445
BmsI	GCATC	1 cut(s)	274
BsaJI	CCNNGG	3 cut(s)	179, 443, 457
Bse1I	ACTGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	394
BseBI	CCWGG	2 cut(s)	243, 445
BseDI	CCNNGG	3 cut(s)	179, 443, 457
BseMI	GCAATG	1 cut(s)	394
BseNI	ACTGG	1 cut(s)	318
BseSI	GKGCMC	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	323
BshFI	GGCC	3 cut(s)	57, 317, 456
BshNI	GGYRCC	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	3 cut(s)	57, 317, 456
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	3 cut(s)	215, 261, 391
Bsp19I	CCATGG	1 cut(s)	179
Bsp68I	TCGCGA	1 cut(s)	323
BspANI	GGCC	3 cut(s)	57, 317, 456
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	2 cut(s)	177, 439
BspMAI	CTGCAG	1 cut(s)	418
BspT107I	GGYRCC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	3 cut(s)	179, 443, 457
BssMI	GATC	3 cut(s)	215, 261, 391
BssT1I	CCWWGG	1 cut(s)	179
Bst2UI	CCWGG	2 cut(s)	243, 445
Bst4CI	ACNGT	3 cut(s)	21, 81, 146
BstDSI	CCRYGG	2 cut(s)	179, 457
BstFNI	CGCG	1 cut(s)	323
BstKTI	GATC	3 cut(s)	218, 264, 394
BstMBI	GATC	3 cut(s)	215, 261, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 413
BstNI	CCWGG	2 cut(s)	243, 445
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	241, 443
BstSFI	CTRYAG	1 cut(s)	414
BstSLI	GKGCMC	1 cut(s)	364
BstUI	CGCG	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BsuRI	GGCC	3 cut(s)	57, 317, 456
BtgI	CCRYGG	2 cut(s)	179, 457
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	2 cut(s)	77, 411
BtuMI	TCGCGA	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	437
CsiI	ACCWGGT	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	207, 239
CviAII	CATG	3 cut(s)	14, 26, 180
CviJI	RGCY	4 cut(s)	57, 107, 317, 456
CviKI_1	RGCY	4 cut(s)	57, 107, 317, 456
CviQI	GTAC	2 cut(s)	207, 239
DpnI	GATC	3 cut(s)	217, 263, 393
DpnII	GATC	3 cut(s)	215, 261, 391
DraI	TTTAAA	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	241, 443
EcoT14I	CCWWGG	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	3 cut(s)	17, 29, 183
FaiI	YATR	8 cut(s)	15, 27, 99, 181, 195, 332, 334, 346
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	3 cut(s)	13, 25, 179
FauNDI	CATATG	1 cut(s)	332
FbaI	TGATCA	1 cut(s)	391
FspBI	CTAG	1 cut(s)	90
HaeIII	GGCC	3 cut(s)	57, 317, 456
HapII	CCGG	1 cut(s)	58
Hin1II	CATG	3 cut(s)	17, 29, 183
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	58
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	4 cut(s)	31, 84, 164, 362
Hpy188I	TCNGA	1 cut(s)	215
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	4 cut(s)	31, 84, 164, 362
HpyAV	CCTTC	3 cut(s)	116, 319, 328
HpyCH4III	ACNGT	3 cut(s)	21, 81, 146
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	3 cut(s)	362, 380, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 413
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	17, 29, 183
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	215, 261, 391
LpnPI	CCDG	8 cut(s)	71, 204, 228, 255, 273, 299, 430, 457
LweI	GCATC	1 cut(s)	274
MabI	ACCWGGT	1 cut(s)	241
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	3 cut(s)	21, 338, 418
MalI	GATC	3 cut(s)	217, 263, 393
MboI	GATC	3 cut(s)	215, 261, 391
MboII	GAAGA	2 cut(s)	199, 293
MflI	RGATCY	1 cut(s)	215
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	1 cut(s)	228
MnlI	CCTC	1 cut(s)	446
MseI	TTAA	1 cut(s)	293
MspI	CCGG	1 cut(s)	58
MspR9I	CCNGG	2 cut(s)	243, 445
MssI	GTTTAAAC	1 cut(s)	294
MvaI	CCWGG	2 cut(s)	243, 445
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	2 cut(s)	10, 413
NcoI	CCATGG	1 cut(s)	179
NdeI	CATATG	1 cut(s)	332
NdeII	GATC	3 cut(s)	215, 261, 391
NlaIII	CATG	3 cut(s)	17, 29, 183
NlaIV	GGNNCC	2 cut(s)	177, 439
NmuCI	GTSAC	1 cut(s)	418
NruI	TCGCGA	1 cut(s)	323
NspI	RCATGY	1 cut(s)	29
PciI	ACATGT	1 cut(s)	25
PmeI	GTTTAAAC	1 cut(s)	294
PpuMI	RGGWCCY	1 cut(s)	437
PscI	ACATGT	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	241, 443
PspGI	CCWGG	2 cut(s)	241, 443
PspN4I	GGNNCC	2 cut(s)	177, 439
PspPI	GGNCC	1 cut(s)	437
PspPPI	RGGWCCY	1 cut(s)	437
PstI	CTGCAG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	215
RruI	TCGCGA	1 cut(s)	323
RsaI	GTAC	2 cut(s)	208, 240
RsaNI	GTAC	2 cut(s)	207, 239
SaqAI	TTAA	1 cut(s)	293
Sau3AI	GATC	3 cut(s)	215, 261, 391
Sau96I	GGNCC	1 cut(s)	437
ScrFI	CCNGG	2 cut(s)	243, 445
SduI	GDGCHC	1 cut(s)	364
SetI	ASST	5 cut(s)	91, 109, 244, 300, 439
SexAI	ACCWGGT	1 cut(s)	241
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	414
SinI	GGWCC	1 cut(s)	437
Sse9I	AATT	1 cut(s)	228
SspI	AATATT	1 cut(s)	374
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	241, 443
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	3 cut(s)	21, 81, 146
TaiI	ACGT	1 cut(s)	300
TasI	AATT	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	2 cut(s)	84, 418
TseFI	GTSAC	1 cut(s)	418
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	84, 418
VneI	GTGCAC	1 cut(s)	360
VpaK11BI	GGWCC	1 cut(s)	437
XceI	RCATGY	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	284
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.